HEADER HYDROLASE 24-MAY-01 1J97 TITLE PHOSPHO-ASPARTYL INTERMEDIATE ANALOGUE OF PHOSPHOSERINE PHOSPHATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOSERINE PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.3.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: B834(DE3)/PSJS1244; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS PHOSPHOSERINE PHOSPHATASE, PSP, PHOSPHO-ASPARTYL, BERYLLIUM FLUORIDE, KEYWDS 2 STRUCTURAL GENOMICS, BSGC STRUCTURE FUNDED BY NIH, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI, BERKELEY STRUCTURAL GENOMICS CENTER, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.CHO,W.WANG,R.KIM,H.YOKOTA,S.DAMO,S.-H.KIM,D.WEMMER,S.KUSTU,D.YAN, AUTHOR 2 BERKELEY STRUCTURAL GENOMICS CENTER (BSGC) REVDAT 5 30-OCT-24 1J97 1 REMARK SEQADV LINK REVDAT 4 24-FEB-09 1J97 1 VERSN REVDAT 3 08-MAR-05 1J97 1 AUTHOR KEYWDS REMARK REVDAT 2 24-AUG-04 1J97 1 JRNL KEYWDS REMARK REVDAT 1 25-JUL-01 1J97 0 JRNL AUTH H.CHO,W.WANG,R.KIM,H.YOKOTA,S.DAMO,S.-H.KIM,D.WEMMER, JRNL AUTH 2 S.KUSTU,D.YAN JRNL TITL BEF(3)(-) ACTS AS A PHOSPHATE ANALOG IN PROTEINS JRNL TITL 2 PHOSPHORYLATED ON ASPARTATE: STRUCTURE OF A BEF(3)(-) JRNL TITL 3 COMPLEX WITH PHOSPHOSERINE PHOSPHATASE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 98 8525 2001 JRNL REFN ISSN 0027-8424 JRNL PMID 11438683 JRNL DOI 10.1073/PNAS.131213698 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.WANG,R.KIM,J.JANCARIK,H.YOKOTA,S.-H.KIM REMARK 1 TITL CRYSTAL STRUCTURE OF PHOSPHOSERINE PHOSPHATASE FROM REMARK 1 TITL 2 METHANOCOCCUS JANNASCHII, A HYPERTHERMOPHILE, AT 1.8 A REMARK 1 TITL 3 RESOLUTION REMARK 1 REF STRUCTURE V. 9 65 2001 REMARK 1 REFN ISSN 0969-2126 REMARK 1 DOI 10.1016/S0969-2126(00)00558-X REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 66996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : 10% RANDOM REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 6790 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3295 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 402 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM SIGMAA (A) : 0.02 REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1J97 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAY-01. REMARK 100 THE DEPOSITION ID IS D_1000013517. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAY-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67186 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.24800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 2K MME, SODIUM PHOSPHATE REMARK 280 DIHYDRATE, NAF, BECL2, MGCL2, SODIUM ACTATE, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 34.41800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.91450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.41800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.91450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 501 REMARK 465 GLU B 502 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 141 OE2 GLU A 141 2755 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 174 CG - SD - CE ANGL. DEV. = 10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 3 141.01 136.67 REMARK 500 PHE A 12 -73.86 -92.53 REMARK 500 SER A 14 -0.39 69.42 REMARK 500 THR A 15 -74.96 -114.44 REMARK 500 PHE B 512 -73.23 -91.59 REMARK 500 SER B 514 -0.91 71.10 REMARK 500 THR B 515 -77.65 -115.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 220 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 BFD A 11 F2 REMARK 620 2 BFD A 11 OD2 88.7 REMARK 620 3 ASP A 13 O 93.1 86.9 REMARK 620 4 ASP A 167 OD1 168.6 80.9 91.1 REMARK 620 5 HOH A 808 O 86.7 88.9 175.8 88.4 REMARK 620 6 HOH A 828 O 100.6 170.6 91.2 89.9 93.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BFD A 11 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MG A 220 MG REMARK 620 2 BFD A 11 OD1 82.4 REMARK 620 3 BFD A 11 F1 120.9 106.8 REMARK 620 4 BFD A 11 F2 32.2 114.6 107.6 REMARK 620 5 BFD A 11 F3 122.0 108.2 110.2 109.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 720 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 BFD B 511 F3 REMARK 620 2 BFD B 511 OD2 87.2 REMARK 620 3 ASP B 513 O 93.8 88.4 REMARK 620 4 ASP B 667 OD1 169.3 83.2 90.6 REMARK 620 5 HOH B 809 O 86.4 89.7 178.0 88.8 REMARK 620 6 HOH B 821 O 99.2 173.0 88.3 90.7 93.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 720 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 240 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1F5S RELATED DB: PDB REMARK 900 1F5S IS THE CRYSTAL STRUCTURE OF PHOSPHOSERINE PHOSPHATASE FROM REMARK 900 METHANOCOCCUS JANNASCHII REMARK 900 RELATED ID: BSGCAIR30380 RELATED DB: TARGETDB DBREF 1J97 A 1 211 UNP Q58989 SERB_METJA 1 211 DBREF 1J97 B 501 711 UNP Q58989 SERB_METJA 1 211 SEQADV 1J97 BFD A 11 UNP Q58989 ASP 11 MODIFIED RESIDUE SEQADV 1J97 BFD B 511 UNP Q58989 ASP 11 MODIFIED RESIDUE SEQRES 1 A 211 MET GLU LYS LYS LYS LYS LEU ILE LEU PHE BFD PHE ASP SEQRES 2 A 211 SER THR LEU VAL ASN ASN GLU THR ILE ASP GLU ILE ALA SEQRES 3 A 211 ARG GLU ALA GLY VAL GLU GLU GLU VAL LYS LYS ILE THR SEQRES 4 A 211 LYS GLU ALA MET GLU GLY LYS LEU ASN PHE GLU GLN SER SEQRES 5 A 211 LEU ARG LYS ARG VAL SER LEU LEU LYS ASP LEU PRO ILE SEQRES 6 A 211 GLU LYS VAL GLU LYS ALA ILE LYS ARG ILE THR PRO THR SEQRES 7 A 211 GLU GLY ALA GLU GLU THR ILE LYS GLU LEU LYS ASN ARG SEQRES 8 A 211 GLY TYR VAL VAL ALA VAL VAL SER GLY GLY PHE ASP ILE SEQRES 9 A 211 ALA VAL ASN LYS ILE LYS GLU LYS LEU GLY LEU ASP TYR SEQRES 10 A 211 ALA PHE ALA ASN ARG LEU ILE VAL LYS ASP GLY LYS LEU SEQRES 11 A 211 THR GLY ASP VAL GLU GLY GLU VAL LEU LYS GLU ASN ALA SEQRES 12 A 211 LYS GLY GLU ILE LEU GLU LYS ILE ALA LYS ILE GLU GLY SEQRES 13 A 211 ILE ASN LEU GLU ASP THR VAL ALA VAL GLY ASP GLY ALA SEQRES 14 A 211 ASN ASP ILE SER MET PHE LYS LYS ALA GLY LEU LYS ILE SEQRES 15 A 211 ALA PHE CYS ALA LYS PRO ILE LEU LYS GLU LYS ALA ASP SEQRES 16 A 211 ILE CYS ILE GLU LYS ARG ASP LEU ARG GLU ILE LEU LYS SEQRES 17 A 211 TYR ILE LYS SEQRES 1 B 211 MET GLU LYS LYS LYS LYS LEU ILE LEU PHE BFD PHE ASP SEQRES 2 B 211 SER THR LEU VAL ASN ASN GLU THR ILE ASP GLU ILE ALA SEQRES 3 B 211 ARG GLU ALA GLY VAL GLU GLU GLU VAL LYS LYS ILE THR SEQRES 4 B 211 LYS GLU ALA MET GLU GLY LYS LEU ASN PHE GLU GLN SER SEQRES 5 B 211 LEU ARG LYS ARG VAL SER LEU LEU LYS ASP LEU PRO ILE SEQRES 6 B 211 GLU LYS VAL GLU LYS ALA ILE LYS ARG ILE THR PRO THR SEQRES 7 B 211 GLU GLY ALA GLU GLU THR ILE LYS GLU LEU LYS ASN ARG SEQRES 8 B 211 GLY TYR VAL VAL ALA VAL VAL SER GLY GLY PHE ASP ILE SEQRES 9 B 211 ALA VAL ASN LYS ILE LYS GLU LYS LEU GLY LEU ASP TYR SEQRES 10 B 211 ALA PHE ALA ASN ARG LEU ILE VAL LYS ASP GLY LYS LEU SEQRES 11 B 211 THR GLY ASP VAL GLU GLY GLU VAL LEU LYS GLU ASN ALA SEQRES 12 B 211 LYS GLY GLU ILE LEU GLU LYS ILE ALA LYS ILE GLU GLY SEQRES 13 B 211 ILE ASN LEU GLU ASP THR VAL ALA VAL GLY ASP GLY ALA SEQRES 14 B 211 ASN ASP ILE SER MET PHE LYS LYS ALA GLY LEU LYS ILE SEQRES 15 B 211 ALA PHE CYS ALA LYS PRO ILE LEU LYS GLU LYS ALA ASP SEQRES 16 B 211 ILE CYS ILE GLU LYS ARG ASP LEU ARG GLU ILE LEU LYS SEQRES 17 B 211 TYR ILE LYS MODRES 1J97 BFD A 11 ASP ASPARTATE BERYLLIUM TRIFLUORIDE MODRES 1J97 BFD B 511 ASP ASPARTATE BERYLLIUM TRIFLUORIDE HET BFD A 11 12 HET BFD B 511 12 HET MG A 220 1 HET MG B 720 1 HET PO4 B 230 5 HET PO4 B 240 5 HETNAM BFD ASPARTATE BERYLLIUM TRIFLUORIDE HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 1 BFD 2(C4 H6 BE F3 N O4 2-) FORMUL 3 MG 2(MG 2+) FORMUL 5 PO4 2(O4 P 3-) FORMUL 7 HOH *402(H2 O) HELIX 1 1 GLU A 20 ALA A 29 1 10 HELIX 2 2 VAL A 31 GLU A 44 1 14 HELIX 3 3 ASN A 48 LEU A 59 1 12 HELIX 4 4 PRO A 64 ARG A 74 1 11 HELIX 5 5 GLY A 80 ARG A 91 1 12 HELIX 6 6 ASP A 103 GLY A 114 1 12 HELIX 7 7 ASN A 142 GLY A 156 1 15 HELIX 8 8 ASN A 158 GLU A 160 5 3 HELIX 9 9 GLY A 168 ASN A 170 5 3 HELIX 10 10 ASP A 171 ALA A 178 1 8 HELIX 11 11 LYS A 187 GLU A 192 1 6 HELIX 12 12 ASP A 202 ILE A 210 5 9 HELIX 13 13 GLU B 520 ALA B 529 1 10 HELIX 14 14 VAL B 531 GLU B 544 1 14 HELIX 15 15 ASN B 548 LEU B 559 1 12 HELIX 16 16 PRO B 564 ARG B 574 1 11 HELIX 17 17 GLY B 580 ARG B 591 1 12 HELIX 18 18 ASP B 603 GLY B 614 1 12 HELIX 19 19 ASN B 642 GLY B 656 1 15 HELIX 20 20 ASN B 658 GLU B 660 5 3 HELIX 21 21 GLY B 668 ASN B 670 5 3 HELIX 22 22 ASP B 671 ALA B 678 1 8 HELIX 23 23 LYS B 687 GLU B 692 1 6 HELIX 24 24 ASP B 702 ILE B 710 5 9 SHEET 1 A 7 LYS A 129 GLU A 135 0 SHEET 2 A 7 TYR A 117 LYS A 126 -1 N ARG A 122 O GLU A 135 SHEET 3 A 7 VAL A 94 PHE A 102 1 O VAL A 95 N TYR A 117 SHEET 4 A 7 LEU A 7 PHE A 10 1 N ILE A 8 O VAL A 94 SHEET 5 A 7 THR A 162 GLY A 166 1 O VAL A 163 N LEU A 9 SHEET 6 A 7 LEU A 180 PHE A 184 1 O LEU A 180 N ALA A 164 SHEET 7 A 7 ILE A 196 ILE A 198 1 O ILE A 196 N ALA A 183 SHEET 1 B 7 LYS B 629 GLU B 635 0 SHEET 2 B 7 TYR B 617 LYS B 626 -1 N ARG B 622 O GLU B 635 SHEET 3 B 7 TYR B 593 PHE B 602 1 O VAL B 595 N TYR B 617 SHEET 4 B 7 LYS B 506 PHE B 510 1 O LYS B 506 N VAL B 594 SHEET 5 B 7 THR B 662 GLY B 666 1 O VAL B 663 N LEU B 509 SHEET 6 B 7 LEU B 680 PHE B 684 1 O LEU B 680 N ALA B 664 SHEET 7 B 7 ILE B 696 ILE B 698 1 O ILE B 696 N ALA B 683 LINK C PHE A 10 N BFD A 11 1555 1555 1.33 LINK C BFD A 11 N PHE A 12 1555 1555 1.33 LINK C PHE B 510 N BFD B 511 1555 1555 1.31 LINK C BFD B 511 N PHE B 512 1555 1555 1.33 LINK F2 BFD A 11 MG MG A 220 1555 1555 2.03 LINK OD2 BFD A 11 MG MG A 220 1555 1555 2.07 LINK BE BFD A 11 MG MG A 220 1555 1555 3.15 LINK O ASP A 13 MG MG A 220 1555 1555 2.08 LINK OD1 ASP A 167 MG MG A 220 1555 1555 2.09 LINK MG MG A 220 O HOH A 808 1555 1555 2.13 LINK MG MG A 220 O HOH A 828 1555 1555 2.07 LINK F3 BFD B 511 MG MG B 720 1555 1555 2.05 LINK OD2 BFD B 511 MG MG B 720 1555 1555 2.05 LINK O ASP B 513 MG MG B 720 1555 1555 2.11 LINK OD1 ASP B 667 MG MG B 720 1555 1555 2.10 LINK MG MG B 720 O HOH B 809 1555 1555 2.13 LINK MG MG B 720 O HOH B 821 1555 1555 2.09 SITE 1 AC1 5 BFD A 11 ASP A 13 ASP A 167 HOH A 808 SITE 2 AC1 5 HOH A 828 SITE 1 AC2 5 BFD B 511 ASP B 513 ASP B 667 HOH B 809 SITE 2 AC2 5 HOH B 821 SITE 1 AC3 8 ASN B 607 LYS B 610 GLU B 611 LYS B 691 SITE 2 AC3 8 CYS B 697 GLU B 699 HOH B 901 HOH B1057 SITE 1 AC4 6 LYS A 4 ASN B 548 GLU B 550 HOH B 804 SITE 2 AC4 6 HOH B 832 HOH B 928 CRYST1 68.836 69.829 91.625 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014527 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014321 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010914 0.00000