data_1J9A # _entry.id 1J9A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1J9A RCSB RCSB013520 WWPDB D_1000013520 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id HI1715 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1J9A _pdbx_database_status.recvd_initial_deposition_date 2001-05-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bonander, N.' 1 'Tordova, M.' 2 'Ladner, J.E.' 3 'Eisenstein, E.' 4 'Gilliland, G.L.' 5 'Structure 2 Function Project (S2F)' 6 # _citation.id primary _citation.title 'The Crystal Structure of Haemophilus Influenzae HI1715, an Oligoribonuclease' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bonander, N.' 1 primary 'Tordova, M.' 2 primary 'Ladner, J.E.' 3 primary 'Eisenstein, E.' 4 primary 'Gilliland, G.L.' 5 # _cell.entry_id 1J9A _cell.length_a 55.110 _cell.length_b 55.110 _cell.length_c 144.430 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1J9A _symmetry.space_group_name_H-M 'P 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat OLIGORIBONUCLEASE 21691.137 1 3.1.-.- ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 water nat water 18.015 139 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name EXORIBONUCLEASE # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SH(MSE)SFDKQNLIWIDLE(MSE)TGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNK(MSE)NDWCQKTH SENGLIERIKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKY(MSE)PDLADYFHYRHLDVSTLKELAA RWKPEILEGFKKENTHLALDDIRESIKELAYYREHF(MSE)KLD ; _entity_poly.pdbx_seq_one_letter_code_can ;SHMSFDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWCQKTHSENGLIERIKAS KLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYMPDLADYFHYRHLDVSTLKELAARWKPEILEGFKKENTH LALDDIRESIKELAYYREHFMKLD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier HI1715 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 HIS n 1 3 MSE n 1 4 SER n 1 5 PHE n 1 6 ASP n 1 7 LYS n 1 8 GLN n 1 9 ASN n 1 10 LEU n 1 11 ILE n 1 12 TRP n 1 13 ILE n 1 14 ASP n 1 15 LEU n 1 16 GLU n 1 17 MSE n 1 18 THR n 1 19 GLY n 1 20 LEU n 1 21 ASP n 1 22 PRO n 1 23 GLU n 1 24 LYS n 1 25 GLU n 1 26 ARG n 1 27 ILE n 1 28 ILE n 1 29 GLU n 1 30 ILE n 1 31 ALA n 1 32 THR n 1 33 ILE n 1 34 VAL n 1 35 THR n 1 36 ASP n 1 37 LYS n 1 38 ASN n 1 39 LEU n 1 40 ASN n 1 41 ILE n 1 42 LEU n 1 43 ALA n 1 44 GLU n 1 45 GLY n 1 46 PRO n 1 47 VAL n 1 48 LEU n 1 49 ALA n 1 50 VAL n 1 51 HIS n 1 52 GLN n 1 53 SER n 1 54 ASP n 1 55 GLU n 1 56 LEU n 1 57 LEU n 1 58 ASN n 1 59 LYS n 1 60 MSE n 1 61 ASN n 1 62 ASP n 1 63 TRP n 1 64 CYS n 1 65 GLN n 1 66 LYS n 1 67 THR n 1 68 HIS n 1 69 SER n 1 70 GLU n 1 71 ASN n 1 72 GLY n 1 73 LEU n 1 74 ILE n 1 75 GLU n 1 76 ARG n 1 77 ILE n 1 78 LYS n 1 79 ALA n 1 80 SER n 1 81 LYS n 1 82 LEU n 1 83 THR n 1 84 GLU n 1 85 ARG n 1 86 ALA n 1 87 ALA n 1 88 GLU n 1 89 LEU n 1 90 GLN n 1 91 THR n 1 92 LEU n 1 93 ASP n 1 94 PHE n 1 95 LEU n 1 96 LYS n 1 97 LYS n 1 98 TRP n 1 99 VAL n 1 100 PRO n 1 101 LYS n 1 102 GLY n 1 103 ALA n 1 104 SER n 1 105 PRO n 1 106 ILE n 1 107 CYS n 1 108 GLY n 1 109 ASN n 1 110 SER n 1 111 ILE n 1 112 ALA n 1 113 GLN n 1 114 ASP n 1 115 LYS n 1 116 ARG n 1 117 PHE n 1 118 LEU n 1 119 VAL n 1 120 LYS n 1 121 TYR n 1 122 MSE n 1 123 PRO n 1 124 ASP n 1 125 LEU n 1 126 ALA n 1 127 ASP n 1 128 TYR n 1 129 PHE n 1 130 HIS n 1 131 TYR n 1 132 ARG n 1 133 HIS n 1 134 LEU n 1 135 ASP n 1 136 VAL n 1 137 SER n 1 138 THR n 1 139 LEU n 1 140 LYS n 1 141 GLU n 1 142 LEU n 1 143 ALA n 1 144 ALA n 1 145 ARG n 1 146 TRP n 1 147 LYS n 1 148 PRO n 1 149 GLU n 1 150 ILE n 1 151 LEU n 1 152 GLU n 1 153 GLY n 1 154 PHE n 1 155 LYS n 1 156 LYS n 1 157 GLU n 1 158 ASN n 1 159 THR n 1 160 HIS n 1 161 LEU n 1 162 ALA n 1 163 LEU n 1 164 ASP n 1 165 ASP n 1 166 ILE n 1 167 ARG n 1 168 GLU n 1 169 SER n 1 170 ILE n 1 171 LYS n 1 172 GLU n 1 173 LEU n 1 174 ALA n 1 175 TYR n 1 176 TYR n 1 177 ARG n 1 178 GLU n 1 179 HIS n 1 180 PHE n 1 181 MSE n 1 182 LYS n 1 183 LEU n 1 184 ASP n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Haemophilus influenzae' _entity_src_nat.pdbx_ncbi_taxonomy_id 727 _entity_src_nat.genus Haemophilus _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details 'GENE HI1715' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ORN_HAEIN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSFDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWCQKTHSENGLIERIKASKL TERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYMPDLADYFHYRHLDVSTLKELAARWKPEILEGFKKENTHLA LDDIRESIKELAYYREHFMKLD ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_accession P45340 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1J9A _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 184 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P45340 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 182 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 4 _struct_ref_seq.pdbx_auth_seq_align_end 185 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1J9A SER A 1 ? UNP P45340 ? ? 'CLONING ARTIFACT' 2 1 1 1J9A HIS A 2 ? UNP P45340 ? ? 'CLONING ARTIFACT' 3 2 1 1J9A MSE A 3 ? UNP P45340 MET 1 'MODIFIED RESIDUE' 4 3 1 1J9A MSE A 17 ? UNP P45340 MET 15 'MODIFIED RESIDUE' 18 4 1 1J9A MSE A 60 ? UNP P45340 MET 58 'MODIFIED RESIDUE' 61 5 1 1J9A MSE A 122 ? UNP P45340 MET 120 'MODIFIED RESIDUE' 123 6 1 1J9A MSE A 181 ? UNP P45340 MET 179 'MODIFIED RESIDUE' 182 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1J9A _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.29 _exptl_crystal.density_percent_sol 46.2 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.3 _exptl_crystal_grow.pdbx_details ;Protein solution: 15 mg/mL protein in 0.01 M HEPES, 0.15 M sodium chloride, 0.005 M DTT, 0.005 M EDTA with pH 7.1-8.0. Reservoir: 2.3 M ammonium sulfate at pH 7.1-7.5. Hanging drop vapor diffusion method. Drops were formed by combining 4 microliters reservoir solution with 4 microliters protein solution. Room temperature., pH 7.3 ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 115 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type BRUKER _diffrn_detector.pdbx_collection_date 2000-02-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9794 1.0 2 0.9796 1.0 3 0.9641 1.0 4 0.9832 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 17-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 17-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9794, 0.9796, 0.9641, 0.9832' # _reflns.entry_id 1J9A _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.5 _reflns.number_obs 14507 _reflns.number_all ? _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.04 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.5 _reflns_shell.d_res_low 2.6 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.15 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2 _reflns_shell.pdbx_redundancy 4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1J9A _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 13792 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.1851 _refine.ls_R_factor_all 0.1915 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.2986 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 715 _refine.ls_number_parameters 6637 _refine.ls_number_restraints 6233 _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details 'ANISOTROPIC SCALING APPLIED BY THE METHOD OF PARKIN, MOEZZI & HOPE, J.APPL.CRYST.28(1995)53-56' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1J9A _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 0 _refine_analyze.occupancy_sum_hydrogen 0.00 _refine_analyze.occupancy_sum_non_hydrogen 1655.50 _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1507 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 139 _refine_hist.number_atoms_total 1656 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.026 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0297 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.030 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.038 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.009 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.123 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.000 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 1J9A _pdbx_refine.R_factor_all_no_cutoff 0.1915 _pdbx_refine.R_factor_obs_no_cutoff 0.1851 _pdbx_refine.free_R_factor_no_cutoff 0.2986 _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5.0 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 715 _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff 0.168 _pdbx_refine.free_R_factor_4sig_cutoff 0.2835 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 594 _pdbx_refine.number_reflns_obs_4sig_cutoff 11271 _pdbx_refine.number_reflns_obs_no_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 1J9A _struct.title OLIGORIBONUCLEASE _struct.pdbx_descriptor 'OLIGORIBONUCLEASE (E.C.3.1.-.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1J9A _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;RIBONUCLEASE, EXORIBONUCLEASE, OLIGORIBONUCLEASE, HAEMOPHILUS INFLUENZAE, Structure 2 Function Project, S2F, Structural Genomics, HYDROLASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 53 ? LYS A 59 ? SER A 54 LYS A 60 1 ? 7 HELX_P HELX_P2 2 ASN A 61 ? GLY A 72 ? ASN A 62 GLY A 73 1 ? 12 HELX_P HELX_P3 3 GLY A 72 ? LYS A 78 ? GLY A 73 LYS A 79 1 ? 7 HELX_P HELX_P4 4 THR A 83 ? LYS A 96 ? THR A 84 LYS A 97 1 ? 14 HELX_P HELX_P5 5 SER A 110 ? MSE A 122 ? SER A 111 MSE A 123 1 ? 13 HELX_P HELX_P6 6 MSE A 122 ? TYR A 128 ? MSE A 123 TYR A 129 1 ? 7 HELX_P HELX_P7 7 VAL A 136 ? LYS A 147 ? VAL A 137 LYS A 148 1 ? 12 HELX_P HELX_P8 8 PRO A 148 ? PHE A 154 ? PRO A 149 PHE A 155 5 ? 7 HELX_P HELX_P9 9 LEU A 161 ? PHE A 180 ? LEU A 162 PHE A 181 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A HIS 2 C ? ? ? 1_555 A MSE 3 N ? ? A HIS 3 A MSE 4 1_555 ? ? ? ? ? ? ? 1.317 ? covale2 covale ? ? A MSE 3 C ? ? ? 1_555 A SER 4 N ? ? A MSE 4 A SER 5 1_555 ? ? ? ? ? ? ? 1.322 ? covale3 covale ? ? A GLU 16 C ? ? ? 1_555 A MSE 17 N ? ? A GLU 17 A MSE 18 1_555 ? ? ? ? ? ? ? 1.318 ? covale4 covale ? ? A MSE 17 C ? ? ? 1_555 A THR 18 N ? ? A MSE 18 A THR 19 1_555 ? ? ? ? ? ? ? 1.333 ? covale5 covale ? ? A LYS 59 C ? ? ? 1_555 A MSE 60 N ? ? A LYS 60 A MSE 61 1_555 ? ? ? ? ? ? ? 1.328 ? covale6 covale ? ? A MSE 60 C ? ? ? 1_555 A ASN 61 N ? ? A MSE 61 A ASN 62 1_555 ? ? ? ? ? ? ? 1.336 ? covale7 covale ? ? A TYR 121 C ? ? ? 1_555 A MSE 122 N ? ? A TYR 122 A MSE 123 1_555 ? ? ? ? ? ? ? 1.332 ? covale8 covale ? ? A MSE 122 C ? ? ? 1_555 A PRO 123 N ? ? A MSE 123 A PRO 124 1_555 ? ? ? ? ? ? ? 1.324 ? covale9 covale ? ? A PHE 180 C ? ? ? 1_555 A MSE 181 N ? ? A PHE 181 A MSE 182 1_555 ? ? ? ? ? ? ? 1.322 ? covale10 covale ? ? A MSE 181 C ? ? ? 1_555 A LYS 182 N ? ? A MSE 182 A LYS 183 1_555 ? ? ? ? ? ? ? 1.333 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 41 ? GLU A 44 ? ILE A 42 GLU A 45 A 2 ILE A 27 ? THR A 35 ? ILE A 28 THR A 36 A 3 LEU A 10 ? MSE A 17 ? LEU A 11 MSE A 18 A 4 ILE A 106 ? GLY A 108 ? ILE A 107 GLY A 109 A 5 HIS A 133 ? ASP A 135 ? HIS A 134 ASP A 136 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ALA A 43 ? O ALA A 44 N VAL A 34 ? N VAL A 35 A 2 3 O THR A 35 ? O THR A 36 N LEU A 10 ? N LEU A 11 A 3 4 N ILE A 13 ? N ILE A 14 O CYS A 107 ? O CYS A 108 A 4 5 O ILE A 106 ? O ILE A 107 N LEU A 134 ? N LEU A 135 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE SO4 A 190' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 200' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 ASN A 109 ? ASN A 110 . ? 1_555 ? 2 AC1 7 SER A 110 ? SER A 111 . ? 1_555 ? 3 AC1 7 TYR A 131 ? TYR A 132 . ? 8_665 ? 4 AC1 7 ARG A 132 ? ARG A 133 . ? 8_665 ? 5 AC1 7 SER A 137 ? SER A 138 . ? 1_555 ? 6 AC1 7 HOH D . ? HOH A 1110 . ? 1_555 ? 7 AC1 7 HOH D . ? HOH A 1134 . ? 1_555 ? 8 AC2 3 VAL A 47 ? VAL A 48 . ? 1_555 ? 9 AC2 3 ALA A 49 ? ALA A 50 . ? 1_555 ? 10 AC2 3 ARG A 76 ? ARG A 77 . ? 1_555 ? # _database_PDB_matrix.entry_id 1J9A _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1J9A _atom_sites.fract_transf_matrix[1][1] 0.018146 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018146 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006924 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 2 2 SER SER A . n A 1 2 HIS 2 3 3 HIS HIS A . n A 1 3 MSE 3 4 4 MSE MSE A . n A 1 4 SER 4 5 5 SER SER A . n A 1 5 PHE 5 6 6 PHE PHE A . n A 1 6 ASP 6 7 7 ASP ASP A . n A 1 7 LYS 7 8 8 LYS LYS A . n A 1 8 GLN 8 9 9 GLN GLN A . n A 1 9 ASN 9 10 10 ASN ASN A . n A 1 10 LEU 10 11 11 LEU LEU A . n A 1 11 ILE 11 12 12 ILE ILE A . n A 1 12 TRP 12 13 13 TRP TRP A . n A 1 13 ILE 13 14 14 ILE ILE A . n A 1 14 ASP 14 15 15 ASP ASP A . n A 1 15 LEU 15 16 16 LEU LEU A . n A 1 16 GLU 16 17 17 GLU GLU A . n A 1 17 MSE 17 18 18 MSE MSE A . n A 1 18 THR 18 19 19 THR THR A . n A 1 19 GLY 19 20 20 GLY GLY A . n A 1 20 LEU 20 21 21 LEU LEU A . n A 1 21 ASP 21 22 22 ASP ASP A . n A 1 22 PRO 22 23 23 PRO PRO A . n A 1 23 GLU 23 24 24 GLU GLU A . n A 1 24 LYS 24 25 25 LYS LYS A . n A 1 25 GLU 25 26 26 GLU GLU A . n A 1 26 ARG 26 27 27 ARG ARG A . n A 1 27 ILE 27 28 28 ILE ILE A . n A 1 28 ILE 28 29 29 ILE ILE A . n A 1 29 GLU 29 30 30 GLU GLU A . n A 1 30 ILE 30 31 31 ILE ILE A . n A 1 31 ALA 31 32 32 ALA ALA A . n A 1 32 THR 32 33 33 THR THR A . n A 1 33 ILE 33 34 34 ILE ILE A . n A 1 34 VAL 34 35 35 VAL VAL A . n A 1 35 THR 35 36 36 THR THR A . n A 1 36 ASP 36 37 37 ASP ASP A . n A 1 37 LYS 37 38 38 LYS LYS A . n A 1 38 ASN 38 39 39 ASN ASN A . n A 1 39 LEU 39 40 40 LEU LEU A . n A 1 40 ASN 40 41 41 ASN ASN A . n A 1 41 ILE 41 42 42 ILE ILE A . n A 1 42 LEU 42 43 43 LEU LEU A . n A 1 43 ALA 43 44 44 ALA ALA A . n A 1 44 GLU 44 45 45 GLU GLU A . n A 1 45 GLY 45 46 46 GLY GLY A . n A 1 46 PRO 46 47 47 PRO PRO A . n A 1 47 VAL 47 48 48 VAL VAL A . n A 1 48 LEU 48 49 49 LEU LEU A . n A 1 49 ALA 49 50 50 ALA ALA A . n A 1 50 VAL 50 51 51 VAL VAL A . n A 1 51 HIS 51 52 52 HIS HIS A . n A 1 52 GLN 52 53 53 GLN GLN A . n A 1 53 SER 53 54 54 SER SER A . n A 1 54 ASP 54 55 55 ASP ASP A . n A 1 55 GLU 55 56 56 GLU GLU A . n A 1 56 LEU 56 57 57 LEU LEU A . n A 1 57 LEU 57 58 58 LEU LEU A . n A 1 58 ASN 58 59 59 ASN ASN A . n A 1 59 LYS 59 60 60 LYS LYS A . n A 1 60 MSE 60 61 61 MSE MSE A . n A 1 61 ASN 61 62 62 ASN ASN A . n A 1 62 ASP 62 63 63 ASP ASP A . n A 1 63 TRP 63 64 64 TRP TRP A . n A 1 64 CYS 64 65 65 CYS CYS A . n A 1 65 GLN 65 66 66 GLN GLN A . n A 1 66 LYS 66 67 67 LYS LYS A . n A 1 67 THR 67 68 68 THR THR A . n A 1 68 HIS 68 69 69 HIS HIS A . n A 1 69 SER 69 70 70 SER SER A . n A 1 70 GLU 70 71 71 GLU GLU A . n A 1 71 ASN 71 72 72 ASN ASN A . n A 1 72 GLY 72 73 73 GLY GLY A . n A 1 73 LEU 73 74 74 LEU LEU A . n A 1 74 ILE 74 75 75 ILE ILE A . n A 1 75 GLU 75 76 76 GLU GLU A . n A 1 76 ARG 76 77 77 ARG ARG A . n A 1 77 ILE 77 78 78 ILE ILE A . n A 1 78 LYS 78 79 79 LYS LYS A . n A 1 79 ALA 79 80 80 ALA ALA A . n A 1 80 SER 80 81 81 SER SER A . n A 1 81 LYS 81 82 82 LYS LYS A . n A 1 82 LEU 82 83 83 LEU LEU A . n A 1 83 THR 83 84 84 THR THR A . n A 1 84 GLU 84 85 85 GLU GLU A . n A 1 85 ARG 85 86 86 ARG ARG A . n A 1 86 ALA 86 87 87 ALA ALA A . n A 1 87 ALA 87 88 88 ALA ALA A . n A 1 88 GLU 88 89 89 GLU GLU A . n A 1 89 LEU 89 90 90 LEU LEU A . n A 1 90 GLN 90 91 91 GLN GLN A . n A 1 91 THR 91 92 92 THR THR A . n A 1 92 LEU 92 93 93 LEU LEU A . n A 1 93 ASP 93 94 94 ASP ASP A . n A 1 94 PHE 94 95 95 PHE PHE A . n A 1 95 LEU 95 96 96 LEU LEU A . n A 1 96 LYS 96 97 97 LYS LYS A . n A 1 97 LYS 97 98 98 LYS LYS A . n A 1 98 TRP 98 99 99 TRP TRP A . n A 1 99 VAL 99 100 100 VAL VAL A . n A 1 100 PRO 100 101 101 PRO PRO A . n A 1 101 LYS 101 102 102 LYS LYS A . n A 1 102 GLY 102 103 103 GLY GLY A . n A 1 103 ALA 103 104 104 ALA ALA A . n A 1 104 SER 104 105 105 SER SER A . n A 1 105 PRO 105 106 106 PRO PRO A . n A 1 106 ILE 106 107 107 ILE ILE A . n A 1 107 CYS 107 108 108 CYS CYS A . n A 1 108 GLY 108 109 109 GLY GLY A . n A 1 109 ASN 109 110 110 ASN ASN A . n A 1 110 SER 110 111 111 SER SER A . n A 1 111 ILE 111 112 112 ILE ILE A . n A 1 112 ALA 112 113 113 ALA ALA A . n A 1 113 GLN 113 114 114 GLN GLN A . n A 1 114 ASP 114 115 115 ASP ASP A . n A 1 115 LYS 115 116 116 LYS LYS A . n A 1 116 ARG 116 117 117 ARG ARG A . n A 1 117 PHE 117 118 118 PHE PHE A . n A 1 118 LEU 118 119 119 LEU LEU A . n A 1 119 VAL 119 120 120 VAL VAL A . n A 1 120 LYS 120 121 121 LYS LYS A . n A 1 121 TYR 121 122 122 TYR TYR A . n A 1 122 MSE 122 123 123 MSE MSE A . n A 1 123 PRO 123 124 124 PRO PRO A . n A 1 124 ASP 124 125 125 ASP ASP A . n A 1 125 LEU 125 126 126 LEU LEU A . n A 1 126 ALA 126 127 127 ALA ALA A . n A 1 127 ASP 127 128 128 ASP ASP A . n A 1 128 TYR 128 129 129 TYR TYR A . n A 1 129 PHE 129 130 130 PHE PHE A . n A 1 130 HIS 130 131 131 HIS HIS A . n A 1 131 TYR 131 132 132 TYR TYR A . n A 1 132 ARG 132 133 133 ARG ARG A . n A 1 133 HIS 133 134 134 HIS HIS A . n A 1 134 LEU 134 135 135 LEU LEU A . n A 1 135 ASP 135 136 136 ASP ASP A . n A 1 136 VAL 136 137 137 VAL VAL A . n A 1 137 SER 137 138 138 SER SER A . n A 1 138 THR 138 139 139 THR THR A . n A 1 139 LEU 139 140 140 LEU LEU A . n A 1 140 LYS 140 141 141 LYS LYS A . n A 1 141 GLU 141 142 142 GLU GLU A . n A 1 142 LEU 142 143 143 LEU LEU A . n A 1 143 ALA 143 144 144 ALA ALA A . n A 1 144 ALA 144 145 145 ALA ALA A . n A 1 145 ARG 145 146 146 ARG ARG A . n A 1 146 TRP 146 147 147 TRP TRP A . n A 1 147 LYS 147 148 148 LYS LYS A . n A 1 148 PRO 148 149 149 PRO PRO A . n A 1 149 GLU 149 150 150 GLU GLU A . n A 1 150 ILE 150 151 151 ILE ILE A . n A 1 151 LEU 151 152 152 LEU LEU A . n A 1 152 GLU 152 153 153 GLU GLU A . n A 1 153 GLY 153 154 154 GLY GLY A . n A 1 154 PHE 154 155 155 PHE PHE A . n A 1 155 LYS 155 156 156 LYS LYS A . n A 1 156 LYS 156 157 157 LYS LYS A . n A 1 157 GLU 157 158 158 GLU GLU A . n A 1 158 ASN 158 159 159 ASN ASN A . n A 1 159 THR 159 160 160 THR THR A . n A 1 160 HIS 160 161 161 HIS HIS A . n A 1 161 LEU 161 162 162 LEU LEU A . n A 1 162 ALA 162 163 163 ALA ALA A . n A 1 163 LEU 163 164 164 LEU LEU A . n A 1 164 ASP 164 165 165 ASP ASP A . n A 1 165 ASP 165 166 166 ASP ASP A . n A 1 166 ILE 166 167 167 ILE ILE A . n A 1 167 ARG 167 168 168 ARG ARG A . n A 1 168 GLU 168 169 169 GLU GLU A . n A 1 169 SER 169 170 170 SER SER A . n A 1 170 ILE 170 171 171 ILE ILE A . n A 1 171 LYS 171 172 172 LYS LYS A . n A 1 172 GLU 172 173 173 GLU GLU A . n A 1 173 LEU 173 174 174 LEU LEU A . n A 1 174 ALA 174 175 175 ALA ALA A . n A 1 175 TYR 175 176 176 TYR TYR A . n A 1 176 TYR 176 177 177 TYR TYR A . n A 1 177 ARG 177 178 178 ARG ARG A . n A 1 178 GLU 178 179 179 GLU GLU A . n A 1 179 HIS 179 180 180 HIS HIS A . n A 1 180 PHE 180 181 181 PHE PHE A . n A 1 181 MSE 181 182 182 MSE MSE A . n A 1 182 LYS 182 183 183 LYS LYS A . n A 1 183 LEU 183 184 184 LEU LEU A . n A 1 184 ASP 184 185 185 ASP ASP A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structure 2 Function Project' _pdbx_SG_project.initial_of_center S2F # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 190 190 SO4 SO4 A . C 2 SO4 1 200 200 SO4 SO4 A . D 3 HOH 1 1001 1001 HOH HOH A . D 3 HOH 2 1002 1002 HOH HOH A . D 3 HOH 3 1003 1003 HOH HOH A . D 3 HOH 4 1004 1004 HOH HOH A . D 3 HOH 5 1005 1005 HOH HOH A . D 3 HOH 6 1006 1006 HOH HOH A . D 3 HOH 7 1007 1007 HOH HOH A . D 3 HOH 8 1008 1008 HOH HOH A . D 3 HOH 9 1009 1009 HOH HOH A . D 3 HOH 10 1010 1010 HOH HOH A . D 3 HOH 11 1011 1011 HOH HOH A . D 3 HOH 12 1012 1012 HOH HOH A . D 3 HOH 13 1013 1013 HOH HOH A . D 3 HOH 14 1014 1014 HOH HOH A . D 3 HOH 15 1015 1015 HOH HOH A . D 3 HOH 16 1016 1016 HOH HOH A . D 3 HOH 17 1017 1017 HOH HOH A . D 3 HOH 18 1018 1018 HOH HOH A . D 3 HOH 19 1019 1019 HOH HOH A . D 3 HOH 20 1020 1020 HOH HOH A . D 3 HOH 21 1021 1021 HOH HOH A . D 3 HOH 22 1022 1022 HOH HOH A . D 3 HOH 23 1023 1023 HOH HOH A . D 3 HOH 24 1024 1024 HOH HOH A . D 3 HOH 25 1025 1025 HOH HOH A . D 3 HOH 26 1026 1026 HOH HOH A . D 3 HOH 27 1027 1027 HOH HOH A . D 3 HOH 28 1028 1028 HOH HOH A . D 3 HOH 29 1029 1029 HOH HOH A . D 3 HOH 30 1030 1030 HOH HOH A . D 3 HOH 31 1031 1031 HOH HOH A . D 3 HOH 32 1032 1032 HOH HOH A . D 3 HOH 33 1033 1033 HOH HOH A . D 3 HOH 34 1034 1034 HOH HOH A . D 3 HOH 35 1035 1035 HOH HOH A . D 3 HOH 36 1036 1036 HOH HOH A . D 3 HOH 37 1037 1037 HOH HOH A . D 3 HOH 38 1038 1038 HOH HOH A . D 3 HOH 39 1039 1039 HOH HOH A . D 3 HOH 40 1040 1040 HOH HOH A . D 3 HOH 41 1041 1041 HOH HOH A . D 3 HOH 42 1042 1042 HOH HOH A . D 3 HOH 43 1043 1043 HOH HOH A . D 3 HOH 44 1044 1044 HOH HOH A . D 3 HOH 45 1045 1045 HOH HOH A . D 3 HOH 46 1046 1046 HOH HOH A . D 3 HOH 47 1047 1047 HOH HOH A . D 3 HOH 48 1048 1048 HOH HOH A . D 3 HOH 49 1049 1049 HOH HOH A . D 3 HOH 50 1050 1050 HOH HOH A . D 3 HOH 51 1051 1051 HOH HOH A . D 3 HOH 52 1052 1052 HOH HOH A . D 3 HOH 53 1053 1053 HOH HOH A . D 3 HOH 54 1054 1054 HOH HOH A . D 3 HOH 55 1055 1055 HOH HOH A . D 3 HOH 56 1056 1056 HOH HOH A . D 3 HOH 57 1057 1057 HOH HOH A . D 3 HOH 58 1058 1058 HOH HOH A . D 3 HOH 59 1059 1059 HOH HOH A . D 3 HOH 60 1060 1060 HOH HOH A . D 3 HOH 61 1061 1061 HOH HOH A . D 3 HOH 62 1062 1062 HOH HOH A . D 3 HOH 63 1063 1063 HOH HOH A . D 3 HOH 64 1064 1064 HOH HOH A . D 3 HOH 65 1065 1065 HOH HOH A . D 3 HOH 66 1066 1066 HOH HOH A . D 3 HOH 67 1067 1067 HOH HOH A . D 3 HOH 68 1068 1068 HOH HOH A . D 3 HOH 69 1069 1069 HOH HOH A . D 3 HOH 70 1070 1070 HOH HOH A . D 3 HOH 71 1071 1071 HOH HOH A . D 3 HOH 72 1072 1072 HOH HOH A . D 3 HOH 73 1073 1073 HOH HOH A . D 3 HOH 74 1074 1074 HOH HOH A . D 3 HOH 75 1075 1075 HOH HOH A . D 3 HOH 76 1076 1076 HOH HOH A . D 3 HOH 77 1077 1077 HOH HOH A . D 3 HOH 78 1078 1078 HOH HOH A . D 3 HOH 79 1079 1079 HOH HOH A . D 3 HOH 80 1080 1080 HOH HOH A . D 3 HOH 81 1081 1081 HOH HOH A . D 3 HOH 82 1082 1082 HOH HOH A . D 3 HOH 83 1083 1083 HOH HOH A . D 3 HOH 84 1084 1084 HOH HOH A . D 3 HOH 85 1085 1085 HOH HOH A . D 3 HOH 86 1086 1086 HOH HOH A . D 3 HOH 87 1087 1087 HOH HOH A . D 3 HOH 88 1088 1088 HOH HOH A . D 3 HOH 89 1089 1089 HOH HOH A . D 3 HOH 90 1090 1090 HOH HOH A . D 3 HOH 91 1091 1091 HOH HOH A . D 3 HOH 92 1092 1092 HOH HOH A . D 3 HOH 93 1093 1093 HOH HOH A . D 3 HOH 94 1094 1094 HOH HOH A . D 3 HOH 95 1095 1095 HOH HOH A . D 3 HOH 96 1096 1096 HOH HOH A . D 3 HOH 97 1097 1097 HOH HOH A . D 3 HOH 98 1098 1098 HOH HOH A . D 3 HOH 99 1099 1099 HOH HOH A . D 3 HOH 100 1100 1100 HOH HOH A . D 3 HOH 101 1101 1101 HOH HOH A . D 3 HOH 102 1102 1102 HOH HOH A . D 3 HOH 103 1103 1103 HOH HOH A . D 3 HOH 104 1104 1104 HOH HOH A . D 3 HOH 105 1105 1105 HOH HOH A . D 3 HOH 106 1106 1106 HOH HOH A . D 3 HOH 107 1107 1107 HOH HOH A . D 3 HOH 108 1108 1108 HOH HOH A . D 3 HOH 109 1109 1109 HOH HOH A . D 3 HOH 110 1110 1110 HOH HOH A . D 3 HOH 111 1111 1111 HOH HOH A . D 3 HOH 112 1112 1112 HOH HOH A . D 3 HOH 113 1113 1113 HOH HOH A . D 3 HOH 114 1114 1114 HOH HOH A . D 3 HOH 115 1115 1115 HOH HOH A . D 3 HOH 116 1116 1116 HOH HOH A . D 3 HOH 117 1117 1117 HOH HOH A . D 3 HOH 118 1118 1118 HOH HOH A . D 3 HOH 119 1119 1119 HOH HOH A . D 3 HOH 120 1120 1120 HOH HOH A . D 3 HOH 121 1121 1121 HOH HOH A . D 3 HOH 122 1122 1122 HOH HOH A . D 3 HOH 123 1123 1123 HOH HOH A . D 3 HOH 124 1124 1124 HOH HOH A . D 3 HOH 125 1125 1125 HOH HOH A . D 3 HOH 126 1126 1126 HOH HOH A . D 3 HOH 127 1127 1127 HOH HOH A . D 3 HOH 128 1128 1128 HOH HOH A . D 3 HOH 129 1129 1129 HOH HOH A . D 3 HOH 130 1130 1130 HOH HOH A . D 3 HOH 131 1131 1131 HOH HOH A . D 3 HOH 132 1132 1132 HOH HOH A . D 3 HOH 133 1133 1133 HOH HOH A . D 3 HOH 134 1134 1134 HOH HOH A . D 3 HOH 135 1135 1135 HOH HOH A . D 3 HOH 136 1136 1136 HOH HOH A . D 3 HOH 137 1137 1137 HOH HOH A . D 3 HOH 138 1138 1138 HOH HOH A . D 3 HOH 139 1139 1139 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 3 A MSE 4 ? MET SELENOMETHIONINE 2 A MSE 17 A MSE 18 ? MET SELENOMETHIONINE 3 A MSE 60 A MSE 61 ? MET SELENOMETHIONINE 4 A MSE 122 A MSE 123 ? MET SELENOMETHIONINE 5 A MSE 181 A MSE 182 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4080 ? 1 MORE -67 ? 1 'SSA (A^2)' 16640 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/4 0.0000000000 -1.0000000000 0.0000000000 55.1100000000 -1.0000000000 0.0000000000 0.0000000000 55.1100000000 0.0000000000 0.0000000000 -1.0000000000 36.1075000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 1135 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-06-24 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 SHELX 'model building' . ? 2 SHELXL-97 refinement . ? 3 HKL-2000 'data reduction' . ? 4 SHELX phasing . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A PHE 6 ? ? CG A PHE 6 ? ? CD2 A PHE 6 ? ? 125.20 120.80 4.40 0.70 N 2 1 CA A LEU 135 ? ? CB A LEU 135 ? ? CG A LEU 135 ? ? 129.24 115.30 13.94 2.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 43 ? ? -91.37 -61.53 2 1 SER A 54 ? ? -46.28 162.69 3 1 MSE A 123 ? ? -149.97 58.82 4 1 HIS A 131 ? ? -49.84 158.71 5 1 LYS A 148 ? ? -169.85 60.73 6 1 ASN A 159 ? ? -81.45 -152.84 7 1 THR A 160 ? ? 140.78 141.03 8 1 PHE A 181 ? ? -147.50 -14.63 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id MSE _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 182 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle -12.73 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #