HEADER HYDROLASE/HYDROLASE INHIBITOR 24-MAY-01 1J9C TITLE CRYSTAL STRUCTURE OF TISSUE FACTOR-FACTOR VIIA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TISSUE FACTOR; COMPND 3 CHAIN: T; COMPND 4 SYNONYM: TF, COAGULATION FACTOR III; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: FACTOR VIIA LIGHT CHAIN; COMPND 8 CHAIN: L; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: FACTOR VIIA HEAVY CHAIN; COMPND 12 CHAIN: H; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 12 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: BHK; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 20 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 22 EXPRESSION_SYSTEM_CELL_LINE: BHK KEYWDS MOBILE LOOP, BLOOD CLOTTING, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.HUANG,W.RUF,T.S.EDGINGTON,I.A.WILSON REVDAT 5 16-AUG-23 1J9C 1 HETSYN REVDAT 4 29-JUL-20 1J9C 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 13-JUL-11 1J9C 1 VERSN REVDAT 2 24-FEB-09 1J9C 1 VERSN REVDAT 1 27-JUL-04 1J9C 0 JRNL AUTH M.HUANG,W.RUF,T.S.EDGINGTON,I.A.WILSON JRNL TITL LIGAND INDUCED CONFORMATIONAL TRANSITIONS OF TISSUE FACTOR. JRNL TITL 2 CRYSTAL STRUCTURE OF THE TISSUE FACTOR:FACTOR VIIA COMPLEX. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 275465.890 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 17231 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.300 REMARK 3 FREE R VALUE TEST SET COUNT : 570 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.013 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2520 REMARK 3 BIN R VALUE (WORKING SET) : 0.3370 REMARK 3 BIN FREE R VALUE : 0.3870 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 80 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.043 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4362 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 127 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : -0.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 41.89000 REMARK 3 B22 (A**2) : -22.38000 REMARK 3 B33 (A**2) : -19.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 6.41000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.56 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.50 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.61 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.990 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 47.46 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : GLA_DPN.PAR REMARK 3 PARAMETER FILE 3 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : ION.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1J9C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-01. REMARK 100 THE DEPOSITION ID IS D_1000013522. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-99 REMARK 200 TEMPERATURE (KELVIN) : 177 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : CYCLINDRICALLY BENT TRIANGULAR REMARK 200 SI(111) ASYMMETRIC CUT, REMARK 200 HORIZONTAL FOCUS MONOCHROMATOR REMARK 200 OPTICS : 58 CM LONG, PT-COATED, FUSED REMARK 200 SILICA, VERTICAL FOCUSMIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MACSCIENCE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18285 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.36900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1DAN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% PEG 400, 2% 2-PROPANOL, 2% PEG REMARK 280 4000, 12.5MM CALCIUM CHLORIDE, 2.0M AMMONIUM SULFATE, 0.1M HEPES, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.15100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER H 195 O2 0Z6 H 1 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS H 199 N - CA - C ANGL. DEV. = -17.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR T 4 -25.60 -154.87 REMARK 500 ASN T 5 -51.50 -158.30 REMARK 500 PHE T 19 -12.12 69.94 REMARK 500 CYS T 49 60.27 37.98 REMARK 500 TYR T 51 55.75 28.64 REMARK 500 ASP T 66 70.95 -170.18 REMARK 500 VAL T 67 2.11 -56.87 REMARK 500 GLU T 84 70.45 -153.49 REMARK 500 GLN T 114 -70.77 -51.00 REMARK 500 SER T 115 103.83 -162.69 REMARK 500 ASP T 129 95.82 -69.13 REMARK 500 VAL T 134 79.48 -63.79 REMARK 500 ASN T 138 -25.76 69.37 REMARK 500 VAL T 146 -70.78 -74.34 REMARK 500 ILE T 152 -164.80 -115.36 REMARK 500 SER T 160 107.47 -51.23 REMARK 500 SER T 161 -18.29 77.46 REMARK 500 SER T 162 -172.09 43.10 REMARK 500 SER T 163 -24.09 -173.14 REMARK 500 THR T 172 -101.44 -67.01 REMARK 500 ASN T 173 12.22 179.99 REMARK 500 LEU T 176 70.32 -161.73 REMARK 500 ASP T 180 -118.62 -65.83 REMARK 500 GLU T 183 112.50 -11.07 REMARK 500 GLN T 190 117.61 -161.31 REMARK 500 VAL T 198 -80.42 -150.11 REMARK 500 SER T 202 -141.90 -94.44 REMARK 500 ASP T 204 107.41 -59.89 REMARK 500 CYS T 209 -135.45 -92.53 REMARK 500 GLN L 49 -50.00 170.80 REMARK 500 CYS L 50 10.56 -63.60 REMARK 500 ALA L 51 -72.44 -50.67 REMARK 500 SER L 52 -1.14 -55.79 REMARK 500 CYS L 55 98.60 -64.71 REMARK 500 ASN L 57 48.73 32.74 REMARK 500 SER L 60 -155.51 -55.95 REMARK 500 CYS L 61 90.85 -175.11 REMARK 500 SER L 67 173.09 176.32 REMARK 500 CYS L 81 15.75 50.32 REMARK 500 LYS L 85 -14.88 -48.67 REMARK 500 ASP L 86 -85.17 -83.32 REMARK 500 ASP L 87 72.86 -32.68 REMARK 500 GLN L 88 12.40 -167.19 REMARK 500 ASN L 93 -85.69 -55.65 REMARK 500 GLN L 100 -97.45 -127.28 REMARK 500 GLU L 116 -17.53 -30.87 REMARK 500 LEU L 121 175.39 -49.32 REMARK 500 TYR L 133 76.87 -109.35 REMARK 500 LYS H 24 118.11 -34.45 REMARK 500 CYS H 27 44.38 -140.31 REMARK 500 REMARK 500 THIS ENTRY HAS 74 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE UNBOUND FORM OF THE INHIBITOR IS D-PHE-PHE-ARG- REMARK 600 CHLOROMETHYLKETONE. UPON REACTION WITH PROTEIN IT FORMS TWO REMARK 600 COVALENT BONDS: 1) A COVALENT BOND TO SER 195 FORMING A HEMIKETAL REMARK 600 AR7 AND 2) A COVALENT BOND TO NE2 OF HIS 57 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA H 376 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU H 70 OE1 REMARK 620 2 ASP H 72 O 82.2 REMARK 620 3 GLU H 75 O 133.5 54.1 REMARK 620 4 GLU H 80 OE2 114.2 158.1 112.3 REMARK 620 5 HOH H 418 O 89.5 71.8 90.9 93.0 REMARK 620 N 1 2 3 4 REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: D-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO)METHYL] REMARK 630 AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L-PHENYLALANINAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 0Z6 H 1 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: DPN PHE AR7 0QE REMARK 630 DETAILS: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DAN RELATED DB: PDB DBREF 1J9C T 1 210 UNP P13726 TF_HUMAN 33 242 DBREF 1J9C L 48 142 UNP P08709 FA7_HUMAN 108 202 DBREF 1J9C H 16 257 UNP P08709 FA7_HUMAN 213 466 SEQRES 1 T 210 SER GLY THR THR ASN THR VAL ALA ALA TYR ASN LEU THR SEQRES 2 T 210 TRP LYS SER THR ASN PHE LYS THR ILE LEU GLU TRP GLU SEQRES 3 T 210 PRO LYS PRO VAL ASN GLN VAL TYR THR VAL GLN ILE SER SEQRES 4 T 210 THR LYS SER GLY ASP TRP LYS SER LYS CYS PHE TYR THR SEQRES 5 T 210 THR ASP THR GLU CYS ASP LEU THR ASP GLU ILE VAL LYS SEQRES 6 T 210 ASP VAL LYS GLN THR TYR LEU ALA ARG VAL PHE SER TYR SEQRES 7 T 210 PRO ALA GLY ASN VAL GLU SER THR GLY SER ALA GLY GLU SEQRES 8 T 210 PRO LEU TYR GLU ASN SER PRO GLU PHE THR PRO TYR LEU SEQRES 9 T 210 GLU THR ASN LEU GLY GLN PRO THR ILE GLN SER PHE GLU SEQRES 10 T 210 GLN VAL GLY THR LYS VAL ASN VAL THR VAL GLU ASP GLU SEQRES 11 T 210 ARG THR LEU VAL ARG ARG ASN ASN THR PHE LEU SER LEU SEQRES 12 T 210 ARG ASP VAL PHE GLY LYS ASP LEU ILE TYR THR LEU TYR SEQRES 13 T 210 TYR TRP LYS SER SER SER SER GLY LYS LYS THR ALA LYS SEQRES 14 T 210 THR ASN THR ASN GLU PHE LEU ILE ASP VAL ASP LYS GLY SEQRES 15 T 210 GLU ASN TYR CYS PHE SER VAL GLN ALA VAL ILE PRO SER SEQRES 16 T 210 ARG THR VAL ASN ARG LYS SER THR ASP SER PRO VAL GLU SEQRES 17 T 210 CYS MET SEQRES 1 L 95 ASP GLN CYS ALA SER SER PRO CYS GLN ASN GLY GLY SER SEQRES 2 L 95 CYS LYS ASP GLN LEU GLN SER TYR ILE CYS PHE CYS LEU SEQRES 3 L 95 PRO ALA PHE GLU GLY ARG ASN CYS GLU THR HIS LYS ASP SEQRES 4 L 95 ASP GLN LEU ILE CYS VAL ASN GLU ASN GLY GLY CYS GLU SEQRES 5 L 95 GLN TYR CYS SER ASP HIS THR GLY THR LYS ARG SER CYS SEQRES 6 L 95 ARG CYS HIS GLU GLY TYR SER LEU LEU ALA ASP GLY VAL SEQRES 7 L 95 SER CYS THR PRO THR VAL GLU TYR PRO CYS GLY LYS ILE SEQRES 8 L 95 PRO ILE LEU GLU SEQRES 1 H 254 ILE VAL GLY GLY LYS VAL CYS PRO LYS GLY GLU CYS PRO SEQRES 2 H 254 TRP GLN VAL LEU LEU LEU VAL ASN GLY ALA GLN LEU CYS SEQRES 3 H 254 GLY GLY THR LEU ILE ASN THR ILE TRP VAL VAL SER ALA SEQRES 4 H 254 ALA HIS CYS PHE ASP LYS ILE LYS ASN TRP ARG ASN LEU SEQRES 5 H 254 ILE ALA VAL LEU GLY GLU HIS ASP LEU SER GLU HIS ASP SEQRES 6 H 254 GLY ASP GLU GLN SER ARG ARG VAL ALA GLN VAL ILE ILE SEQRES 7 H 254 PRO SER THR TYR VAL PRO GLY THR THR ASN HIS ASP ILE SEQRES 8 H 254 ALA LEU LEU ARG LEU HIS GLN PRO VAL VAL LEU THR ASP SEQRES 9 H 254 HIS VAL VAL PRO LEU CYS LEU PRO GLU ARG THR PHE SER SEQRES 10 H 254 GLU ARG THR LEU ALA PHE VAL ARG PHE SER LEU VAL SER SEQRES 11 H 254 GLY TRP GLY GLN LEU LEU ASP ARG GLY ALA THR ALA LEU SEQRES 12 H 254 GLU LEU MET VAL LEU ASN VAL PRO ARG LEU MET THR GLN SEQRES 13 H 254 ASP CYS LEU GLN GLN SER ARG LYS VAL GLY ASP SER PRO SEQRES 14 H 254 ASN ILE THR GLU TYR MET PHE CYS ALA GLY TYR SER ASP SEQRES 15 H 254 GLY SER LYS ASP SER CYS LYS GLY ASP SER GLY GLY PRO SEQRES 16 H 254 HIS ALA THR HIS TYR ARG GLY THR TRP TYR LEU THR GLY SEQRES 17 H 254 ILE VAL SER TRP GLY GLN GLY CYS ALA THR VAL GLY HIS SEQRES 18 H 254 PHE GLY VAL TYR THR ARG VAL SER GLN TYR ILE GLU TRP SEQRES 19 H 254 LEU GLN LYS LEU MET ARG SER GLU PRO ARG PRO GLY VAL SEQRES 20 H 254 LEU LEU ARG ALA PRO PHE PRO MODRES 1J9C SER L 52 SER GLYCOSYLATION SITE MODRES 1J9C SER L 60 SER GLYCOSYLATION SITE MODRES 1J9C ASN H 175 ASN GLYCOSYLATION SITE HET GLC L 352 11 HET FUL L 360 10 HET 0Z6 H 1 34 HET NAG H 375 14 HET CA H 376 1 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FUL BETA-L-FUCOPYRANOSE HETNAM 0Z6 D-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO) HETNAM 2 0Z6 METHYL]AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L- HETNAM 3 0Z6 PHENYLALANINAMIDE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN FUL BETA-L-FUCOSE; 6-DEOXY-BETA-L-GALACTOPYRANOSE; L- HETSYN 2 FUL FUCOSE; FUCOSE; 6-DEOXY-BETA-L-GALACTOSE HETSYN 0Z6 FFRCK HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 GLC C6 H12 O6 FORMUL 5 FUL C6 H12 O5 FORMUL 6 0Z6 C25 H36 CL N6 O3 1+ FORMUL 7 NAG C8 H15 N O6 FORMUL 8 CA CA 2+ FORMUL 9 HOH *127(H2 O) HELIX 1 1 LEU T 59 VAL T 64 1 6 HELIX 2 2 LYS T 65 VAL T 67 5 3 HELIX 3 3 THR T 101 THR T 106 1 6 HELIX 4 4 LEU T 143 PHE T 147 1 5 HELIX 5 5 GLN L 49 SER L 53 5 5 HELIX 6 6 GLU L 94 CYS L 98 5 5 HELIX 7 7 ALA H 55 ASP H 60 5 6 HELIX 8 8 GLU H 125 THR H 129C 1 8 HELIX 9 9 LEU H 129D VAL H 129G 5 4 HELIX 10 10 MET H 164 SER H 170B 1 9 HELIX 11 11 TYR H 234 SER H 244 1 11 SHEET 1 A 3 TYR T 10 THR T 17 0 SHEET 2 A 3 LYS T 20 GLU T 26 -1 N LYS T 20 O THR T 17 SHEET 3 A 3 GLU T 56 ASP T 58 -1 O CYS T 57 N LEU T 23 SHEET 1 B 4 LYS T 46 THR T 52 0 SHEET 2 B 4 GLN T 32 THR T 40 -1 N TYR T 34 O THR T 52 SHEET 3 B 4 TYR T 71 PRO T 79 -1 O LEU T 72 N SER T 39 SHEET 4 B 4 LEU T 93 ASN T 96 -1 O LEU T 93 N SER T 77 SHEET 1 C 3 GLU T 117 GLN T 118 0 SHEET 2 C 3 LYS T 122 ASN T 124 -1 N ASN T 124 O GLU T 117 SHEET 3 C 3 ILE T 177 ASP T 178 -1 O ILE T 177 N VAL T 123 SHEET 1 D 2 ARG T 131 ARG T 136 0 SHEET 2 D 2 THR T 139 SER T 142 -1 O THR T 139 N ARG T 136 SHEET 1 E 3 LYS T 166 ALA T 168 0 SHEET 2 E 3 ILE T 152 TYR T 157 -1 N LEU T 155 O ALA T 168 SHEET 3 E 3 SER T 188 VAL T 192 -1 N SER T 188 O TYR T 156 SHEET 1 F 2 PHE L 76 GLU L 77 0 SHEET 2 F 2 THR L 83 HIS L 84 -1 N THR L 83 O GLU L 77 SHEET 1 G 2 TYR L 101 HIS L 105 0 SHEET 2 G 2 THR L 108 ARG L 113 -1 N THR L 108 O HIS L 105 SHEET 1 H 2 TYR L 118 LEU L 120 0 SHEET 2 H 2 CYS L 127 PRO L 129 -1 N THR L 128 O SER L 119 SHEET 1 I 8 LYS H 20 VAL H 21 0 SHEET 2 I 8 MET H 156 LEU H 163 -1 N VAL H 157 O LYS H 20 SHEET 3 I 8 MET H 180 ALA H 183 -1 O CYS H 182 N LEU H 163 SHEET 4 I 8 GLY H 226 ARG H 230 -1 O GLY H 226 N ALA H 183 SHEET 5 I 8 THR H 206 GLY H 216 -1 O ILE H 212 N THR H 229 SHEET 6 I 8 PRO H 198 TYR H 203 -1 N HIS H 199 O GLY H 211 SHEET 7 I 8 PHE H 135 GLY H 140 -1 N LEU H 137 O ALA H 200 SHEET 8 I 8 MET H 156 LEU H 163 -1 O MET H 156 N GLY H 140 SHEET 1 J 8 LEU H 251 LEU H 252 0 SHEET 2 J 8 GLN H 81 ILE H 89 1 O VAL H 88 N LEU H 252 SHEET 3 J 8 ALA H 104 LEU H 108 -1 N LEU H 105 O ILE H 89 SHEET 4 J 8 TRP H 51 SER H 54 -1 O VAL H 52 N LEU H 106 SHEET 5 J 8 ALA H 39 ASN H 48 -1 N THR H 45 O VAL H 53 SHEET 6 J 8 GLN H 30 VAL H 35 -1 N VAL H 31 O GLY H 44 SHEET 7 J 8 LEU H 64 LEU H 68 -1 O ILE H 65 N LEU H 34 SHEET 8 J 8 GLN H 81 ILE H 89 -1 O GLN H 81 N LEU H 68 SSBOND 1 CYS T 49 CYS T 57 1555 1555 2.04 SSBOND 2 CYS T 186 CYS T 209 1555 1555 2.03 SSBOND 3 CYS L 50 CYS L 61 1555 1555 2.04 SSBOND 4 CYS L 55 CYS L 70 1555 1555 2.03 SSBOND 5 CYS L 72 CYS L 81 1555 1555 2.03 SSBOND 6 CYS L 91 CYS L 102 1555 1555 2.04 SSBOND 7 CYS L 98 CYS L 112 1555 1555 2.03 SSBOND 8 CYS L 114 CYS L 127 1555 1555 2.02 SSBOND 9 CYS L 135 CYS H 122 1555 1555 2.03 SSBOND 10 CYS H 22 CYS H 27 1555 1555 2.03 SSBOND 11 CYS H 42 CYS H 58 1555 1555 2.02 SSBOND 12 CYS H 168 CYS H 182 1555 1555 2.02 SSBOND 13 CYS H 191 CYS H 220 1555 1555 2.02 LINK OG SER L 52 C1 GLC L 352 1555 1555 1.39 LINK OG SER L 60 C1 FUL L 360 1555 1555 1.40 LINK C3 0Z6 H 1 NE2 HIS H 57 1555 1555 1.49 LINK C2 0Z6 H 1 OG SER H 195 1555 1555 1.36 LINK ND2 ASN H 175 C1 NAG H 375 1555 1555 1.46 LINK OE1 GLU H 70 CA CA H 376 1555 1555 2.58 LINK O ASP H 72 CA CA H 376 1555 1555 2.80 LINK O GLU H 75 CA CA H 376 1555 1555 3.06 LINK OE2 GLU H 80 CA CA H 376 1555 1555 2.53 LINK CA CA H 376 O HOH H 418 1555 1555 2.83 CISPEP 1 GLU T 26 PRO T 27 0 0.18 CISPEP 2 PHE H 256 PRO H 257 0 -0.16 CRYST1 77.038 68.302 78.438 90.00 92.12 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012981 0.000000 0.000481 0.00000 SCALE2 0.000000 0.014641 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012758 0.00000