data_1J9H # _entry.id 1J9H # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1J9H pdb_00001j9h 10.2210/pdb1j9h/pdb NDB AR0034 ? ? RCSB RCSB013527 ? ? WWPDB D_1000013527 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-10-26 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_conn_type 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 19 4 'Structure model' '_pdbx_struct_conn_angle.value' 20 4 'Structure model' '_struct_conn.conn_type_id' 21 4 'Structure model' '_struct_conn.id' 22 4 'Structure model' '_struct_conn.pdbx_dist_value' 23 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 24 4 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 25 4 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 26 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 27 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 30 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 31 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 32 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 33 4 'Structure model' '_struct_conn.ptnr1_symmetry' 34 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 35 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 36 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 37 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 38 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 39 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 40 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 41 4 'Structure model' '_struct_conn.ptnr2_symmetry' 42 4 'Structure model' '_struct_conn_type.id' 43 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 44 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 45 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1J9H _pdbx_database_status.recvd_initial_deposition_date 2001-05-25 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Xiong, Y.' 1 'Deng, J.' 2 'Sudarsanakumar, C.' 3 'Sundaralingam, M.' 4 # _citation.id primary _citation.title 'Crystal structure of an RNA duplex r(gugucgcac)(2) with uridine bulges.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 313 _citation.page_first 573 _citation.page_last 582 _citation.year 2001 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11676540 _citation.pdbx_database_id_DOI 10.1006/jmbi.2001.5045 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Xiong, Y.' 1 ? primary 'Deng, J.' 2 ? primary 'Sudarsanakumar, C.' 3 ? primary 'Sundaralingam, M.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*GP*UP*GP*UP*CP*GP*(CBR)P*AP*C)-3'" 2910.639 4 ? ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 4 ? ? ? ? 3 water nat water 18.015 146 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GUGUCG(CBR)AC' _entity_poly.pdbx_seq_one_letter_code_can GUGUCGCAC _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 U n 1 3 G n 1 4 U n 1 5 C n 1 6 G n 1 7 CBR n 1 8 A n 1 9 C n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CBR 'DNA linking' n "5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 Br N3 O7 P' 386.093 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 U 2 2 2 U U A . n A 1 3 G 3 3 3 G G A . n A 1 4 U 4 4 4 U U A . n A 1 5 C 5 5 5 C C A . n A 1 6 G 6 6 6 G G A . n A 1 7 CBR 7 7 7 CBR BRO A . n A 1 8 A 8 8 8 A A A . n A 1 9 C 9 9 9 C C A . n B 1 1 G 1 10 10 G G B . n B 1 2 U 2 11 11 U U B . n B 1 3 G 3 12 12 G G B . n B 1 4 U 4 13 13 U U B . n B 1 5 C 5 14 14 C C B . n B 1 6 G 6 15 15 G G B . n B 1 7 CBR 7 16 16 CBR BRO B . n B 1 8 A 8 17 17 A A B . n B 1 9 C 9 18 18 C C B . n C 1 1 G 1 19 19 G G C . n C 1 2 U 2 20 20 U U C . n C 1 3 G 3 21 21 G G C . n C 1 4 U 4 22 22 U U C . n C 1 5 C 5 23 23 C C C . n C 1 6 G 6 24 24 G G C . n C 1 7 CBR 7 25 25 CBR BRO C . n C 1 8 A 8 26 26 A A C . n C 1 9 C 9 27 27 C C C . n D 1 1 G 1 28 28 G G D . n D 1 2 U 2 29 29 U U D . n D 1 3 G 3 30 30 G G D . n D 1 4 U 4 31 31 U U D . n D 1 5 C 5 32 32 C C D . n D 1 6 G 6 33 33 G G D . n D 1 7 CBR 7 34 34 CBR BRO D . n D 1 8 A 8 35 35 A A D . n D 1 9 C 9 36 36 C C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CA 1 103 103 CA CA A . F 2 CA 1 104 104 CA CA B . G 2 CA 1 101 101 CA CA C . H 2 CA 1 102 102 CA CA D . I 3 HOH 1 123 123 HOH HOH A . I 3 HOH 2 127 127 HOH HOH A . I 3 HOH 3 134 134 HOH HOH A . I 3 HOH 4 146 146 HOH HOH A . I 3 HOH 5 150 150 HOH HOH A . I 3 HOH 6 151 151 HOH HOH A . I 3 HOH 7 154 154 HOH HOH A . I 3 HOH 8 157 157 HOH HOH A . I 3 HOH 9 159 159 HOH HOH A . I 3 HOH 10 164 164 HOH HOH A . I 3 HOH 11 165 165 HOH HOH A . I 3 HOH 12 175 175 HOH HOH A . I 3 HOH 13 179 179 HOH HOH A . I 3 HOH 14 195 195 HOH HOH A . I 3 HOH 15 196 196 HOH HOH A . I 3 HOH 16 202 202 HOH HOH A . I 3 HOH 17 209 209 HOH HOH A . I 3 HOH 18 210 210 HOH HOH A . I 3 HOH 19 211 211 HOH HOH A . I 3 HOH 20 213 213 HOH HOH A . I 3 HOH 21 214 214 HOH HOH A . I 3 HOH 22 217 217 HOH HOH A . I 3 HOH 23 226 226 HOH HOH A . I 3 HOH 24 228 228 HOH HOH A . I 3 HOH 25 229 229 HOH HOH A . I 3 HOH 26 230 230 HOH HOH A . I 3 HOH 27 231 231 HOH HOH A . I 3 HOH 28 234 234 HOH HOH A . I 3 HOH 29 246 246 HOH HOH A . I 3 HOH 30 247 247 HOH HOH A . I 3 HOH 31 248 248 HOH HOH A . I 3 HOH 32 251 251 HOH HOH A . J 3 HOH 1 109 109 HOH HOH B . J 3 HOH 2 111 111 HOH HOH B . J 3 HOH 3 114 114 HOH HOH B . J 3 HOH 4 118 118 HOH HOH B . J 3 HOH 5 122 122 HOH HOH B . J 3 HOH 6 144 144 HOH HOH B . J 3 HOH 7 148 148 HOH HOH B . J 3 HOH 8 153 153 HOH HOH B . J 3 HOH 9 158 158 HOH HOH B . J 3 HOH 10 162 162 HOH HOH B . J 3 HOH 11 163 163 HOH HOH B . J 3 HOH 12 169 169 HOH HOH B . J 3 HOH 13 174 174 HOH HOH B . J 3 HOH 14 180 180 HOH HOH B . J 3 HOH 15 184 184 HOH HOH B . J 3 HOH 16 186 186 HOH HOH B . J 3 HOH 17 187 187 HOH HOH B . J 3 HOH 18 200 200 HOH HOH B . J 3 HOH 19 205 205 HOH HOH B . J 3 HOH 20 216 216 HOH HOH B . J 3 HOH 21 220 220 HOH HOH B . J 3 HOH 22 224 224 HOH HOH B . J 3 HOH 23 233 233 HOH HOH B . J 3 HOH 24 237 237 HOH HOH B . J 3 HOH 25 239 239 HOH HOH B . J 3 HOH 26 240 240 HOH HOH B . J 3 HOH 27 242 242 HOH HOH B . J 3 HOH 28 244 244 HOH HOH B . J 3 HOH 29 245 245 HOH HOH B . J 3 HOH 30 252 252 HOH HOH B . K 3 HOH 1 107 107 HOH HOH C . K 3 HOH 2 108 108 HOH HOH C . K 3 HOH 3 110 110 HOH HOH C . K 3 HOH 4 113 113 HOH HOH C . K 3 HOH 5 116 116 HOH HOH C . K 3 HOH 6 119 119 HOH HOH C . K 3 HOH 7 120 120 HOH HOH C . K 3 HOH 8 121 121 HOH HOH C . K 3 HOH 9 124 124 HOH HOH C . K 3 HOH 10 126 126 HOH HOH C . K 3 HOH 11 128 128 HOH HOH C . K 3 HOH 12 130 130 HOH HOH C . K 3 HOH 13 136 136 HOH HOH C . K 3 HOH 14 138 138 HOH HOH C . K 3 HOH 15 140 140 HOH HOH C . K 3 HOH 16 141 141 HOH HOH C . K 3 HOH 17 143 143 HOH HOH C . K 3 HOH 18 145 145 HOH HOH C . K 3 HOH 19 147 147 HOH HOH C . K 3 HOH 20 149 149 HOH HOH C . K 3 HOH 21 152 152 HOH HOH C . K 3 HOH 22 155 155 HOH HOH C . K 3 HOH 23 156 156 HOH HOH C . K 3 HOH 24 160 160 HOH HOH C . K 3 HOH 25 167 167 HOH HOH C . K 3 HOH 26 168 168 HOH HOH C . K 3 HOH 27 170 170 HOH HOH C . K 3 HOH 28 171 171 HOH HOH C . K 3 HOH 29 172 172 HOH HOH C . K 3 HOH 30 177 177 HOH HOH C . K 3 HOH 31 181 181 HOH HOH C . K 3 HOH 32 188 188 HOH HOH C . K 3 HOH 33 191 191 HOH HOH C . K 3 HOH 34 192 192 HOH HOH C . K 3 HOH 35 197 197 HOH HOH C . K 3 HOH 36 199 199 HOH HOH C . K 3 HOH 37 204 204 HOH HOH C . K 3 HOH 38 206 206 HOH HOH C . K 3 HOH 39 208 208 HOH HOH C . K 3 HOH 40 212 212 HOH HOH C . K 3 HOH 41 218 218 HOH HOH C . K 3 HOH 42 219 219 HOH HOH C . K 3 HOH 43 222 222 HOH HOH C . K 3 HOH 44 223 223 HOH HOH C . K 3 HOH 45 225 225 HOH HOH C . K 3 HOH 46 249 249 HOH HOH C . K 3 HOH 47 250 250 HOH HOH C . L 3 HOH 1 112 112 HOH HOH D . L 3 HOH 2 115 115 HOH HOH D . L 3 HOH 3 117 117 HOH HOH D . L 3 HOH 4 125 125 HOH HOH D . L 3 HOH 5 129 129 HOH HOH D . L 3 HOH 6 131 131 HOH HOH D . L 3 HOH 7 132 132 HOH HOH D . L 3 HOH 8 133 133 HOH HOH D . L 3 HOH 9 135 135 HOH HOH D . L 3 HOH 10 137 137 HOH HOH D . L 3 HOH 11 139 139 HOH HOH D . L 3 HOH 12 142 142 HOH HOH D . L 3 HOH 13 161 161 HOH HOH D . L 3 HOH 14 166 166 HOH HOH D . L 3 HOH 15 173 173 HOH HOH D . L 3 HOH 16 176 176 HOH HOH D . L 3 HOH 17 178 178 HOH HOH D . L 3 HOH 18 182 182 HOH HOH D . L 3 HOH 19 183 183 HOH HOH D . L 3 HOH 20 185 185 HOH HOH D . L 3 HOH 21 189 189 HOH HOH D . L 3 HOH 22 190 190 HOH HOH D . L 3 HOH 23 193 193 HOH HOH D . L 3 HOH 24 194 194 HOH HOH D . L 3 HOH 25 198 198 HOH HOH D . L 3 HOH 26 201 201 HOH HOH D . L 3 HOH 27 203 203 HOH HOH D . L 3 HOH 28 207 207 HOH HOH D . L 3 HOH 29 215 215 HOH HOH D . L 3 HOH 30 221 221 HOH HOH D . L 3 HOH 31 227 227 HOH HOH D . L 3 HOH 32 232 232 HOH HOH D . L 3 HOH 33 235 235 HOH HOH D . L 3 HOH 34 236 236 HOH HOH D . L 3 HOH 35 238 238 HOH HOH D . L 3 HOH 36 241 241 HOH HOH D . L 3 HOH 37 243 243 HOH HOH D . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SCALEPACK 'data scaling' . ? 1 MLPHARE phasing . ? 2 CNS refinement 1.0 ? 3 # _cell.entry_id 1J9H _cell.length_a 47.180 _cell.length_b 47.180 _cell.length_c 80.040 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1J9H _symmetry.space_group_name_H-M 'P 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 # _exptl.entry_id 1J9H _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.96 _exptl_crystal.density_percent_sol 37.09 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details ;20mM sodium cacodylate (pH 6.0), 10mM calcium chloride, 100mM sodium chloride, and 10%(v/v) MPD against 50% MPD in the reservoir, VAPOR DIFFUSION, HANGING DROP ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'sodium cacodylate' ? ? ? 1 2 1 CaCl2 ? ? ? 1 3 1 NaCl ? ? ? 1 4 1 MPD ? ? ? 1 5 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.92 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 14-BM-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 14-BM-D _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.92 # _reflns.entry_id 1J9H _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20 _reflns.d_resolution_high 1.4 _reflns.number_obs 33934 _reflns.number_all ? _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs 0.083 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 22 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1J9H _refine.ls_number_reflns_obs 33271 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 20 _refine.ls_d_res_high 1.4 _refine.ls_percent_reflns_obs 97.8 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.212 _refine.ls_R_factor_R_free 0.234 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 3228 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 748 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 146 _refine_hist.number_atoms_total 904 _refine_hist.d_res_high 1.4 _refine_hist.d_res_low 20 # _database_PDB_matrix.entry_id 1J9H _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1J9H _struct.title 'Crystal Structure of an RNA Duplex with Uridine Bulges' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1J9H _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'Uridine Bulge, RNA duplex, A-form, Kink, Metal binding, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1J9H _struct_ref.pdbx_db_accession 1J9H _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1J9H A 1 ? 9 ? 1J9H 1 ? 9 ? 1 9 2 1 1J9H B 1 ? 9 ? 1J9H 10 ? 18 ? 10 18 3 1 1J9H C 1 ? 9 ? 1J9H 19 ? 27 ? 19 27 4 1 1J9H D 1 ? 9 ? 1J9H 28 ? 36 ? 28 36 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,I,J 2 1 C,D,G,H,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A G 6 "O3'" ? ? ? 1_555 A CBR 7 P ? ? A G 6 A CBR 7 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale2 covale both ? A CBR 7 "O3'" ? ? ? 1_555 A A 8 P ? ? A CBR 7 A A 8 1_555 ? ? ? ? ? ? ? 1.625 ? ? covale3 covale both ? B G 6 "O3'" ? ? ? 1_555 B CBR 7 P ? ? B G 15 B CBR 16 1_555 ? ? ? ? ? ? ? 1.617 ? ? covale4 covale both ? B CBR 7 "O3'" ? ? ? 1_555 B A 8 P ? ? B CBR 16 B A 17 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale5 covale both ? C G 6 "O3'" ? ? ? 1_555 C CBR 7 P ? ? C G 24 C CBR 25 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale6 covale both ? C CBR 7 "O3'" ? ? ? 1_555 C A 8 P ? ? C CBR 25 C A 26 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale7 covale both ? D G 6 "O3'" ? ? ? 1_555 D CBR 7 P ? ? D G 33 D CBR 34 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale8 covale both ? D CBR 7 "O3'" ? ? ? 1_555 D A 8 P ? ? D CBR 34 D A 35 1_555 ? ? ? ? ? ? ? 1.615 ? ? metalc1 metalc ? ? A U 4 OP2 ? ? ? 1_555 E CA . CA A ? A U 4 A CA 103 1_555 ? ? ? ? ? ? ? 2.520 ? ? metalc2 metalc ? ? A C 5 OP1 ? ? ? 1_555 E CA . CA A ? A C 5 A CA 103 1_555 ? ? ? ? ? ? ? 2.010 ? ? metalc3 metalc ? ? A C 5 OP1 ? ? ? 1_555 E CA . CA B ? A C 5 A CA 103 1_555 ? ? ? ? ? ? ? 2.551 ? ? metalc4 metalc ? ? A C 9 "O2'" ? ? ? 6_575 F CA . CA B ? A C 9 B CA 104 1_555 ? ? ? ? ? ? ? 2.268 ? ? metalc5 metalc ? ? A C 9 "O3'" ? ? ? 6_575 F CA . CA B ? A C 9 B CA 104 1_555 ? ? ? ? ? ? ? 3.003 ? ? metalc6 metalc ? ? A C 9 "O3'" ? ? ? 6_575 F CA . CA A ? A C 9 B CA 104 1_555 ? ? ? ? ? ? ? 2.253 ? ? metalc7 metalc ? ? A C 9 "O2'" ? ? ? 6_575 F CA . CA A ? A C 9 B CA 104 1_555 ? ? ? ? ? ? ? 2.927 ? ? metalc8 metalc ? ? E CA . CA A ? ? 1_555 I HOH . O ? ? A CA 103 A HOH 179 1_555 ? ? ? ? ? ? ? 2.454 ? ? metalc9 metalc ? ? E CA . CA B ? ? 1_555 I HOH . O ? ? A CA 103 A HOH 179 1_555 ? ? ? ? ? ? ? 3.297 ? ? metalc10 metalc ? ? E CA . CA A ? ? 1_555 I HOH . O ? ? A CA 103 A HOH 234 1_555 ? ? ? ? ? ? ? 2.019 ? ? metalc11 metalc ? ? E CA . CA B ? ? 1_555 I HOH . O ? ? A CA 103 A HOH 234 1_555 ? ? ? ? ? ? ? 2.435 ? ? metalc12 metalc ? ? E CA . CA A ? ? 1_555 B C 9 "O2'" ? ? A CA 103 B C 18 6_565 ? ? ? ? ? ? ? 2.420 ? ? metalc13 metalc ? ? E CA . CA A ? ? 1_555 B C 9 "O3'" ? ? A CA 103 B C 18 6_565 ? ? ? ? ? ? ? 2.867 ? ? metalc14 metalc ? ? E CA . CA B ? ? 1_555 B C 9 "O2'" ? ? A CA 103 B C 18 6_565 ? ? ? ? ? ? ? 2.757 ? ? metalc15 metalc ? ? E CA . CA B ? ? 1_555 B C 9 "O3'" ? ? A CA 103 B C 18 6_565 ? ? ? ? ? ? ? 2.120 ? ? metalc16 metalc ? ? E CA . CA B ? ? 1_555 L HOH . O ? ? A CA 103 D HOH 182 1_555 ? ? ? ? ? ? ? 2.635 ? ? metalc17 metalc ? ? E CA . CA B ? ? 1_555 L HOH . O ? ? A CA 103 D HOH 238 1_555 ? ? ? ? ? ? ? 2.086 ? ? metalc18 metalc ? ? E CA . CA A ? ? 1_555 L HOH . O ? ? A CA 103 D HOH 238 1_555 ? ? ? ? ? ? ? 3.153 ? ? metalc19 metalc ? ? I HOH . O ? ? ? 6_575 F CA . CA A ? A HOH 196 B CA 104 1_555 ? ? ? ? ? ? ? 2.317 ? ? metalc20 metalc ? ? B U 4 OP2 ? ? ? 1_555 F CA . CA B ? B U 13 B CA 104 1_555 ? ? ? ? ? ? ? 2.500 ? ? metalc21 metalc ? ? B C 5 OP1 ? ? ? 1_555 F CA . CA A ? B C 14 B CA 104 1_555 ? ? ? ? ? ? ? 2.444 ? ? metalc22 metalc ? ? B C 5 OP1 ? ? ? 1_555 F CA . CA B ? B C 14 B CA 104 1_555 ? ? ? ? ? ? ? 1.934 ? ? metalc23 metalc ? ? F CA . CA A ? ? 1_555 J HOH . O ? ? B CA 104 B HOH 163 1_555 ? ? ? ? ? ? ? 2.562 ? ? metalc24 metalc ? ? F CA . CA B ? ? 1_555 J HOH . O ? ? B CA 104 B HOH 163 1_555 ? ? ? ? ? ? ? 1.915 ? ? metalc25 metalc ? ? F CA . CA B ? ? 1_555 J HOH . O ? ? B CA 104 B HOH 237 1_555 ? ? ? ? ? ? ? 3.356 ? ? metalc26 metalc ? ? F CA . CA A ? ? 1_555 J HOH . O ? ? B CA 104 B HOH 252 1_555 ? ? ? ? ? ? ? 2.256 ? ? metalc27 metalc ? ? J HOH . O ? ? ? 2_765 G CA . CA ? ? B HOH 118 C CA 101 1_555 ? ? ? ? ? ? ? 2.479 ? ? metalc28 metalc ? ? C U 4 OP2 ? ? ? 1_555 G CA . CA ? ? C U 22 C CA 101 1_555 ? ? ? ? ? ? ? 2.298 ? ? metalc29 metalc ? ? C C 5 OP1 ? ? ? 1_555 G CA . CA ? ? C C 23 C CA 101 1_555 ? ? ? ? ? ? ? 2.332 ? ? metalc30 metalc ? ? C C 9 "O3'" ? ? ? 5_656 H CA . CA ? ? C C 27 D CA 102 1_555 ? ? ? ? ? ? ? 2.524 ? ? metalc31 metalc ? ? C C 9 "O2'" ? ? ? 5_656 H CA . CA ? ? C C 27 D CA 102 1_555 ? ? ? ? ? ? ? 2.423 ? ? metalc32 metalc ? ? G CA . CA ? ? ? 1_555 K HOH . O ? ? C CA 101 C HOH 110 1_555 ? ? ? ? ? ? ? 2.285 ? ? metalc33 metalc ? ? G CA . CA ? ? ? 1_555 K HOH . O ? ? C CA 101 C HOH 141 1_555 ? ? ? ? ? ? ? 2.427 ? ? metalc34 metalc ? ? G CA . CA ? ? ? 1_555 D C 9 "O3'" ? ? C CA 101 D C 36 5_756 ? ? ? ? ? ? ? 2.527 ? ? metalc35 metalc ? ? G CA . CA ? ? ? 1_555 D C 9 "O2'" ? ? C CA 101 D C 36 5_756 ? ? ? ? ? ? ? 2.393 ? ? metalc36 metalc ? ? K HOH . O ? ? ? 5_656 H CA . CA ? ? C HOH 119 D CA 102 1_555 ? ? ? ? ? ? ? 2.267 ? ? metalc37 metalc ? ? D U 4 OP2 ? ? ? 1_555 H CA . CA ? ? D U 31 D CA 102 1_555 ? ? ? ? ? ? ? 2.326 ? ? metalc38 metalc ? ? D C 5 OP1 ? ? ? 1_555 H CA . CA ? ? D C 32 D CA 102 1_555 ? ? ? ? ? ? ? 2.342 ? ? metalc39 metalc ? ? H CA . CA ? ? ? 1_555 L HOH . O ? ? D CA 102 D HOH 132 1_555 ? ? ? ? ? ? ? 2.468 ? ? metalc40 metalc ? ? H CA . CA ? ? ? 1_555 L HOH . O ? ? D CA 102 D HOH 139 1_555 ? ? ? ? ? ? ? 2.472 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 9 N3 ? ? A G 1 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 9 O2 ? ? A G 1 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 9 N4 ? ? A G 1 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 N3 ? ? ? 1_555 B A 8 N1 ? ? A U 2 B A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 2 O4 ? ? ? 1_555 B A 8 N6 ? ? A U 2 B A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 N1 ? ? ? 1_555 B CBR 7 N3 ? ? A G 3 B CBR 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N2 ? ? ? 1_555 B CBR 7 O2 ? ? A G 3 B CBR 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 O6 ? ? ? 1_555 B CBR 7 N4 ? ? A G 3 B CBR 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 4 N3 ? ? ? 1_555 B A 8 N3 ? ? A U 4 B A 17 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog10 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 6 N1 ? ? A C 5 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 6 O6 ? ? A C 5 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 6 N2 ? ? A C 5 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 6 N1 ? ? ? 1_555 B C 5 N3 ? ? A G 6 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 N2 ? ? ? 1_555 B C 5 O2 ? ? A G 6 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 O6 ? ? ? 1_555 B C 5 N4 ? ? A G 6 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A CBR 7 N3 ? ? ? 1_555 B G 3 N1 ? ? A CBR 7 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A CBR 7 N4 ? ? ? 1_555 B G 3 O6 ? ? A CBR 7 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A CBR 7 O2 ? ? ? 1_555 B G 3 N2 ? ? A CBR 7 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 8 N1 ? ? ? 1_555 B U 2 N3 ? ? A A 8 B U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 8 N6 ? ? ? 1_555 B U 2 O4 ? ? A A 8 B U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A A 8 N3 ? ? ? 1_555 B U 4 N3 ? ? A A 8 B U 13 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog22 hydrog ? ? A C 9 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 9 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 9 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 9 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 9 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 9 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C G 1 N1 ? ? ? 1_555 D C 9 N3 ? ? C G 19 D C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C G 1 N2 ? ? ? 1_555 D C 9 O2 ? ? C G 19 D C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C G 1 O6 ? ? ? 1_555 D C 9 N4 ? ? C G 19 D C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C U 2 N3 ? ? ? 1_555 D A 8 N1 ? ? C U 20 D A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C U 2 O4 ? ? ? 1_555 D A 8 N6 ? ? C U 20 D A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C G 3 N1 ? ? ? 1_555 D CBR 7 N3 ? ? C G 21 D CBR 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C G 3 N2 ? ? ? 1_555 D CBR 7 O2 ? ? C G 21 D CBR 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C G 3 O6 ? ? ? 1_555 D CBR 7 N4 ? ? C G 21 D CBR 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C U 4 N3 ? ? ? 1_555 D A 8 N3 ? ? C U 22 D A 35 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog34 hydrog ? ? C C 5 N3 ? ? ? 1_555 D G 6 N1 ? ? C C 23 D G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C C 5 N4 ? ? ? 1_555 D G 6 O6 ? ? C C 23 D G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C C 5 O2 ? ? ? 1_555 D G 6 N2 ? ? C C 23 D G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C G 6 N1 ? ? ? 1_555 D C 5 N3 ? ? C G 24 D C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C G 6 N2 ? ? ? 1_555 D C 5 O2 ? ? C G 24 D C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C G 6 O6 ? ? ? 1_555 D C 5 N4 ? ? C G 24 D C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C CBR 7 N3 ? ? ? 1_555 D G 3 N1 ? ? C CBR 25 D G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C CBR 7 N4 ? ? ? 1_555 D G 3 O6 ? ? C CBR 25 D G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C CBR 7 O2 ? ? ? 1_555 D G 3 N2 ? ? C CBR 25 D G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C A 8 N1 ? ? ? 1_555 D U 2 N3 ? ? C A 26 D U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C A 8 N6 ? ? ? 1_555 D U 2 O4 ? ? C A 26 D U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C A 8 N3 ? ? ? 1_555 D U 4 N3 ? ? C A 26 D U 31 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog46 hydrog ? ? C C 9 N3 ? ? ? 1_555 D G 1 N1 ? ? C C 27 D G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C C 9 N4 ? ? ? 1_555 D G 1 O6 ? ? C C 27 D G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C C 9 O2 ? ? ? 1_555 D G 1 N2 ? ? C C 27 D G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A U 4 ? A U 4 ? 1_555 CA A E CA . ? A CA 103 ? 1_555 OP1 ? A C 5 ? A C 5 ? 1_555 93.3 ? 2 OP2 ? A U 4 ? A U 4 ? 1_555 CA A E CA . ? A CA 103 ? 1_555 O ? I HOH . ? A HOH 179 ? 1_555 73.0 ? 3 OP1 ? A C 5 ? A C 5 ? 1_555 CA A E CA . ? A CA 103 ? 1_555 O ? I HOH . ? A HOH 179 ? 1_555 81.1 ? 4 OP2 ? A U 4 ? A U 4 ? 1_555 CA A E CA . ? A CA 103 ? 1_555 O ? I HOH . ? A HOH 234 ? 1_555 77.5 ? 5 OP1 ? A C 5 ? A C 5 ? 1_555 CA A E CA . ? A CA 103 ? 1_555 O ? I HOH . ? A HOH 234 ? 1_555 168.6 ? 6 O ? I HOH . ? A HOH 179 ? 1_555 CA A E CA . ? A CA 103 ? 1_555 O ? I HOH . ? A HOH 234 ? 1_555 89.8 ? 7 OP2 ? A U 4 ? A U 4 ? 1_555 CA A E CA . ? A CA 103 ? 1_555 "O2'" ? B C 9 ? B C 18 ? 6_565 76.0 ? 8 OP1 ? A C 5 ? A C 5 ? 1_555 CA A E CA . ? A CA 103 ? 1_555 "O2'" ? B C 9 ? B C 18 ? 6_565 102.5 ? 9 O ? I HOH . ? A HOH 179 ? 1_555 CA A E CA . ? A CA 103 ? 1_555 "O2'" ? B C 9 ? B C 18 ? 6_565 149.0 ? 10 O ? I HOH . ? A HOH 234 ? 1_555 CA A E CA . ? A CA 103 ? 1_555 "O2'" ? B C 9 ? B C 18 ? 6_565 82.0 ? 11 OP2 ? A U 4 ? A U 4 ? 1_555 CA A E CA . ? A CA 103 ? 1_555 "O3'" ? B C 9 ? B C 18 ? 6_565 131.1 ? 12 OP1 ? A C 5 ? A C 5 ? 1_555 CA A E CA . ? A CA 103 ? 1_555 "O3'" ? B C 9 ? B C 18 ? 6_565 75.6 ? 13 O ? I HOH . ? A HOH 179 ? 1_555 CA A E CA . ? A CA 103 ? 1_555 "O3'" ? B C 9 ? B C 18 ? 6_565 146.7 ? 14 O ? I HOH . ? A HOH 234 ? 1_555 CA A E CA . ? A CA 103 ? 1_555 "O3'" ? B C 9 ? B C 18 ? 6_565 115.5 ? 15 "O2'" ? B C 9 ? B C 18 ? 6_565 CA A E CA . ? A CA 103 ? 1_555 "O3'" ? B C 9 ? B C 18 ? 6_565 61.0 ? 16 OP2 ? A U 4 ? A U 4 ? 1_555 CA A E CA . ? A CA 103 ? 1_555 O ? L HOH . ? D HOH 238 ? 1_555 168.9 ? 17 OP1 ? A C 5 ? A C 5 ? 1_555 CA A E CA . ? A CA 103 ? 1_555 O ? L HOH . ? D HOH 238 ? 1_555 79.3 ? 18 O ? I HOH . ? A HOH 179 ? 1_555 CA A E CA . ? A CA 103 ? 1_555 O ? L HOH . ? D HOH 238 ? 1_555 97.5 ? 19 O ? I HOH . ? A HOH 234 ? 1_555 CA A E CA . ? A CA 103 ? 1_555 O ? L HOH . ? D HOH 238 ? 1_555 108.8 ? 20 "O2'" ? B C 9 ? B C 18 ? 6_565 CA A E CA . ? A CA 103 ? 1_555 O ? L HOH . ? D HOH 238 ? 1_555 113.5 ? 21 "O3'" ? B C 9 ? B C 18 ? 6_565 CA A E CA . ? A CA 103 ? 1_555 O ? L HOH . ? D HOH 238 ? 1_555 55.2 ? 22 OP1 ? A C 5 ? A C 5 ? 1_555 CA B E CA . ? A CA 103 ? 1_555 O ? I HOH . ? A HOH 179 ? 1_555 58.3 ? 23 OP1 ? A C 5 ? A C 5 ? 1_555 CA B E CA . ? A CA 103 ? 1_555 O ? I HOH . ? A HOH 234 ? 1_555 107.0 ? 24 O ? I HOH . ? A HOH 179 ? 1_555 CA B E CA . ? A CA 103 ? 1_555 O ? I HOH . ? A HOH 234 ? 1_555 65.2 ? 25 OP1 ? A C 5 ? A C 5 ? 1_555 CA B E CA . ? A CA 103 ? 1_555 "O2'" ? B C 9 ? B C 18 ? 6_565 81.4 ? 26 O ? I HOH . ? A HOH 179 ? 1_555 CA B E CA . ? A CA 103 ? 1_555 "O2'" ? B C 9 ? B C 18 ? 6_565 101.4 ? 27 O ? I HOH . ? A HOH 234 ? 1_555 CA B E CA . ? A CA 103 ? 1_555 "O2'" ? B C 9 ? B C 18 ? 6_565 68.3 ? 28 OP1 ? A C 5 ? A C 5 ? 1_555 CA B E CA . ? A CA 103 ? 1_555 "O3'" ? B C 9 ? B C 18 ? 6_565 81.5 ? 29 O ? I HOH . ? A HOH 179 ? 1_555 CA B E CA . ? A CA 103 ? 1_555 "O3'" ? B C 9 ? B C 18 ? 6_565 139.6 ? 30 O ? I HOH . ? A HOH 234 ? 1_555 CA B E CA . ? A CA 103 ? 1_555 "O3'" ? B C 9 ? B C 18 ? 6_565 131.6 ? 31 "O2'" ? B C 9 ? B C 18 ? 6_565 CA B E CA . ? A CA 103 ? 1_555 "O3'" ? B C 9 ? B C 18 ? 6_565 66.1 ? 32 OP1 ? A C 5 ? A C 5 ? 1_555 CA B E CA . ? A CA 103 ? 1_555 O ? L HOH . ? D HOH 182 ? 1_555 159.2 ? 33 O ? I HOH . ? A HOH 179 ? 1_555 CA B E CA . ? A CA 103 ? 1_555 O ? L HOH . ? D HOH 182 ? 1_555 141.1 ? 34 O ? I HOH . ? A HOH 234 ? 1_555 CA B E CA . ? A CA 103 ? 1_555 O ? L HOH . ? D HOH 182 ? 1_555 91.8 ? 35 "O2'" ? B C 9 ? B C 18 ? 6_565 CA B E CA . ? A CA 103 ? 1_555 O ? L HOH . ? D HOH 182 ? 1_555 97.8 ? 36 "O3'" ? B C 9 ? B C 18 ? 6_565 CA B E CA . ? A CA 103 ? 1_555 O ? L HOH . ? D HOH 182 ? 1_555 79.2 ? 37 OP1 ? A C 5 ? A C 5 ? 1_555 CA B E CA . ? A CA 103 ? 1_555 O ? L HOH . ? D HOH 238 ? 1_555 94.1 ? 38 O ? I HOH . ? A HOH 179 ? 1_555 CA B E CA . ? A CA 103 ? 1_555 O ? L HOH . ? D HOH 238 ? 1_555 101.6 ? 39 O ? I HOH . ? A HOH 234 ? 1_555 CA B E CA . ? A CA 103 ? 1_555 O ? L HOH . ? D HOH 238 ? 1_555 140.5 ? 40 "O2'" ? B C 9 ? B C 18 ? 6_565 CA B E CA . ? A CA 103 ? 1_555 O ? L HOH . ? D HOH 238 ? 1_555 149.6 ? 41 "O3'" ? B C 9 ? B C 18 ? 6_565 CA B E CA . ? A CA 103 ? 1_555 O ? L HOH . ? D HOH 238 ? 1_555 83.5 ? 42 O ? L HOH . ? D HOH 182 ? 1_555 CA B E CA . ? A CA 103 ? 1_555 O ? L HOH . ? D HOH 238 ? 1_555 76.0 ? 43 "O2'" ? A C 9 ? A C 9 ? 6_575 CA B F CA . ? B CA 104 ? 1_555 "O3'" ? A C 9 ? A C 9 ? 6_575 61.3 ? 44 "O2'" ? A C 9 ? A C 9 ? 6_575 CA B F CA . ? B CA 104 ? 1_555 OP2 ? B U 4 ? B U 13 ? 1_555 86.4 ? 45 "O3'" ? A C 9 ? A C 9 ? 6_575 CA B F CA . ? B CA 104 ? 1_555 OP2 ? B U 4 ? B U 13 ? 1_555 140.9 ? 46 "O2'" ? A C 9 ? A C 9 ? 6_575 CA B F CA . ? B CA 104 ? 1_555 OP1 ? B C 5 ? B C 14 ? 1_555 106.1 ? 47 "O3'" ? A C 9 ? A C 9 ? 6_575 CA B F CA . ? B CA 104 ? 1_555 OP1 ? B C 5 ? B C 14 ? 1_555 73.7 ? 48 OP2 ? B U 4 ? B U 13 ? 1_555 CA B F CA . ? B CA 104 ? 1_555 OP1 ? B C 5 ? B C 14 ? 1_555 97.2 ? 49 "O2'" ? A C 9 ? A C 9 ? 6_575 CA B F CA . ? B CA 104 ? 1_555 O ? J HOH . ? B HOH 163 ? 1_555 94.2 ? 50 "O3'" ? A C 9 ? A C 9 ? 6_575 CA B F CA . ? B CA 104 ? 1_555 O ? J HOH . ? B HOH 163 ? 1_555 123.0 ? 51 OP2 ? B U 4 ? B U 13 ? 1_555 CA B F CA . ? B CA 104 ? 1_555 O ? J HOH . ? B HOH 163 ? 1_555 77.7 ? 52 OP1 ? B C 5 ? B C 14 ? 1_555 CA B F CA . ? B CA 104 ? 1_555 O ? J HOH . ? B HOH 163 ? 1_555 158.8 ? 53 "O2'" ? A C 9 ? A C 9 ? 6_575 CA B F CA . ? B CA 104 ? 1_555 O ? J HOH . ? B HOH 237 ? 1_555 141.6 ? 54 "O3'" ? A C 9 ? A C 9 ? 6_575 CA B F CA . ? B CA 104 ? 1_555 O ? J HOH . ? B HOH 237 ? 1_555 155.5 ? 55 OP2 ? B U 4 ? B U 13 ? 1_555 CA B F CA . ? B CA 104 ? 1_555 O ? J HOH . ? B HOH 237 ? 1_555 56.0 ? 56 OP1 ? B C 5 ? B C 14 ? 1_555 CA B F CA . ? B CA 104 ? 1_555 O ? J HOH . ? B HOH 237 ? 1_555 87.9 ? 57 O ? J HOH . ? B HOH 163 ? 1_555 CA B F CA . ? B CA 104 ? 1_555 O ? J HOH . ? B HOH 237 ? 1_555 72.0 ? 58 "O3'" ? A C 9 ? A C 9 ? 6_575 CA A F CA . ? B CA 104 ? 1_555 "O2'" ? A C 9 ? A C 9 ? 6_575 62.8 ? 59 "O3'" ? A C 9 ? A C 9 ? 6_575 CA A F CA . ? B CA 104 ? 1_555 O ? I HOH . ? A HOH 196 ? 6_575 85.9 ? 60 "O2'" ? A C 9 ? A C 9 ? 6_575 CA A F CA . ? B CA 104 ? 1_555 O ? I HOH . ? A HOH 196 ? 6_575 93.4 ? 61 "O3'" ? A C 9 ? A C 9 ? 6_575 CA A F CA . ? B CA 104 ? 1_555 OP1 ? B C 5 ? B C 14 ? 1_555 81.9 ? 62 "O2'" ? A C 9 ? A C 9 ? 6_575 CA A F CA . ? B CA 104 ? 1_555 OP1 ? B C 5 ? B C 14 ? 1_555 77.0 ? 63 O ? I HOH . ? A HOH 196 ? 6_575 CA A F CA . ? B CA 104 ? 1_555 OP1 ? B C 5 ? B C 14 ? 1_555 167.0 ? 64 "O3'" ? A C 9 ? A C 9 ? 6_575 CA A F CA . ? B CA 104 ? 1_555 O ? J HOH . ? B HOH 163 ? 1_555 129.2 ? 65 "O2'" ? A C 9 ? A C 9 ? 6_575 CA A F CA . ? B CA 104 ? 1_555 O ? J HOH . ? B HOH 163 ? 1_555 67.8 ? 66 O ? I HOH . ? A HOH 196 ? 6_575 CA A F CA . ? B CA 104 ? 1_555 O ? J HOH . ? B HOH 163 ? 1_555 86.2 ? 67 OP1 ? B C 5 ? B C 14 ? 1_555 CA A F CA . ? B CA 104 ? 1_555 O ? J HOH . ? B HOH 163 ? 1_555 98.1 ? 68 "O3'" ? A C 9 ? A C 9 ? 6_575 CA A F CA . ? B CA 104 ? 1_555 O ? J HOH . ? B HOH 252 ? 1_555 78.5 ? 69 "O2'" ? A C 9 ? A C 9 ? 6_575 CA A F CA . ? B CA 104 ? 1_555 O ? J HOH . ? B HOH 252 ? 1_555 139.5 ? 70 O ? I HOH . ? A HOH 196 ? 6_575 CA A F CA . ? B CA 104 ? 1_555 O ? J HOH . ? B HOH 252 ? 1_555 95.2 ? 71 OP1 ? B C 5 ? B C 14 ? 1_555 CA A F CA . ? B CA 104 ? 1_555 O ? J HOH . ? B HOH 252 ? 1_555 86.7 ? 72 O ? J HOH . ? B HOH 163 ? 1_555 CA A F CA . ? B CA 104 ? 1_555 O ? J HOH . ? B HOH 252 ? 1_555 152.3 ? 73 O ? J HOH . ? B HOH 118 ? 2_765 CA ? G CA . ? C CA 101 ? 1_555 OP2 ? C U 4 ? C U 22 ? 1_555 154.1 ? 74 O ? J HOH . ? B HOH 118 ? 2_765 CA ? G CA . ? C CA 101 ? 1_555 OP1 ? C C 5 ? C C 23 ? 1_555 97.2 ? 75 OP2 ? C U 4 ? C U 22 ? 1_555 CA ? G CA . ? C CA 101 ? 1_555 OP1 ? C C 5 ? C C 23 ? 1_555 86.4 ? 76 O ? J HOH . ? B HOH 118 ? 2_765 CA ? G CA . ? C CA 101 ? 1_555 O ? K HOH . ? C HOH 110 ? 1_555 84.0 ? 77 OP2 ? C U 4 ? C U 22 ? 1_555 CA ? G CA . ? C CA 101 ? 1_555 O ? K HOH . ? C HOH 110 ? 1_555 85.5 ? 78 OP1 ? C C 5 ? C C 23 ? 1_555 CA ? G CA . ? C CA 101 ? 1_555 O ? K HOH . ? C HOH 110 ? 1_555 163.6 ? 79 O ? J HOH . ? B HOH 118 ? 2_765 CA ? G CA . ? C CA 101 ? 1_555 O ? K HOH . ? C HOH 141 ? 1_555 78.6 ? 80 OP2 ? C U 4 ? C U 22 ? 1_555 CA ? G CA . ? C CA 101 ? 1_555 O ? K HOH . ? C HOH 141 ? 1_555 77.2 ? 81 OP1 ? C C 5 ? C C 23 ? 1_555 CA ? G CA . ? C CA 101 ? 1_555 O ? K HOH . ? C HOH 141 ? 1_555 77.8 ? 82 O ? K HOH . ? C HOH 110 ? 1_555 CA ? G CA . ? C CA 101 ? 1_555 O ? K HOH . ? C HOH 141 ? 1_555 86.5 ? 83 O ? J HOH . ? B HOH 118 ? 2_765 CA ? G CA . ? C CA 101 ? 1_555 "O3'" ? D C 9 ? D C 36 ? 5_756 77.4 ? 84 OP2 ? C U 4 ? C U 22 ? 1_555 CA ? G CA . ? C CA 101 ? 1_555 "O3'" ? D C 9 ? D C 36 ? 5_756 128.1 ? 85 OP1 ? C C 5 ? C C 23 ? 1_555 CA ? G CA . ? C CA 101 ? 1_555 "O3'" ? D C 9 ? D C 36 ? 5_756 77.5 ? 86 O ? K HOH . ? C HOH 110 ? 1_555 CA ? G CA . ? C CA 101 ? 1_555 "O3'" ? D C 9 ? D C 36 ? 5_756 118.5 ? 87 O ? K HOH . ? C HOH 141 ? 1_555 CA ? G CA . ? C CA 101 ? 1_555 "O3'" ? D C 9 ? D C 36 ? 5_756 142.8 ? 88 O ? J HOH . ? B HOH 118 ? 2_765 CA ? G CA . ? C CA 101 ? 1_555 "O2'" ? D C 9 ? D C 36 ? 5_756 128.7 ? 89 OP2 ? C U 4 ? C U 22 ? 1_555 CA ? G CA . ? C CA 101 ? 1_555 "O2'" ? D C 9 ? D C 36 ? 5_756 74.2 ? 90 OP1 ? C C 5 ? C C 23 ? 1_555 CA ? G CA . ? C CA 101 ? 1_555 "O2'" ? D C 9 ? D C 36 ? 5_756 103.9 ? 91 O ? K HOH . ? C HOH 110 ? 1_555 CA ? G CA . ? C CA 101 ? 1_555 "O2'" ? D C 9 ? D C 36 ? 5_756 87.6 ? 92 O ? K HOH . ? C HOH 141 ? 1_555 CA ? G CA . ? C CA 101 ? 1_555 "O2'" ? D C 9 ? D C 36 ? 5_756 151.2 ? 93 "O3'" ? D C 9 ? D C 36 ? 5_756 CA ? G CA . ? C CA 101 ? 1_555 "O2'" ? D C 9 ? D C 36 ? 5_756 62.9 ? 94 "O3'" ? C C 9 ? C C 27 ? 5_656 CA ? H CA . ? D CA 102 ? 1_555 "O2'" ? C C 9 ? C C 27 ? 5_656 63.2 ? 95 "O3'" ? C C 9 ? C C 27 ? 5_656 CA ? H CA . ? D CA 102 ? 1_555 O ? K HOH . ? C HOH 119 ? 5_656 118.3 ? 96 "O2'" ? C C 9 ? C C 27 ? 5_656 CA ? H CA . ? D CA 102 ? 1_555 O ? K HOH . ? C HOH 119 ? 5_656 85.2 ? 97 "O3'" ? C C 9 ? C C 27 ? 5_656 CA ? H CA . ? D CA 102 ? 1_555 OP2 ? D U 4 ? D U 31 ? 1_555 124.0 ? 98 "O2'" ? C C 9 ? C C 27 ? 5_656 CA ? H CA . ? D CA 102 ? 1_555 OP2 ? D U 4 ? D U 31 ? 1_555 71.8 ? 99 O ? K HOH . ? C HOH 119 ? 5_656 CA ? H CA . ? D CA 102 ? 1_555 OP2 ? D U 4 ? D U 31 ? 1_555 87.8 ? 100 "O3'" ? C C 9 ? C C 27 ? 5_656 CA ? H CA . ? D CA 102 ? 1_555 OP1 ? D C 5 ? D C 32 ? 1_555 77.2 ? 101 "O2'" ? C C 9 ? C C 27 ? 5_656 CA ? H CA . ? D CA 102 ? 1_555 OP1 ? D C 5 ? D C 32 ? 1_555 106.5 ? 102 O ? K HOH . ? C HOH 119 ? 5_656 CA ? H CA . ? D CA 102 ? 1_555 OP1 ? D C 5 ? D C 32 ? 1_555 164.1 ? 103 OP2 ? D U 4 ? D U 31 ? 1_555 CA ? H CA . ? D CA 102 ? 1_555 OP1 ? D C 5 ? D C 32 ? 1_555 85.8 ? 104 "O3'" ? C C 9 ? C C 27 ? 5_656 CA ? H CA . ? D CA 102 ? 1_555 O ? L HOH . ? D HOH 132 ? 1_555 77.0 ? 105 "O2'" ? C C 9 ? C C 27 ? 5_656 CA ? H CA . ? D CA 102 ? 1_555 O ? L HOH . ? D HOH 132 ? 1_555 127.9 ? 106 O ? K HOH . ? C HOH 119 ? 5_656 CA ? H CA . ? D CA 102 ? 1_555 O ? L HOH . ? D HOH 132 ? 1_555 85.6 ? 107 OP2 ? D U 4 ? D U 31 ? 1_555 CA ? H CA . ? D CA 102 ? 1_555 O ? L HOH . ? D HOH 132 ? 1_555 158.4 ? 108 OP1 ? D C 5 ? D C 32 ? 1_555 CA ? H CA . ? D CA 102 ? 1_555 O ? L HOH . ? D HOH 132 ? 1_555 95.1 ? 109 "O3'" ? C C 9 ? C C 27 ? 5_656 CA ? H CA . ? D CA 102 ? 1_555 O ? L HOH . ? D HOH 139 ? 1_555 143.3 ? 110 "O2'" ? C C 9 ? C C 27 ? 5_656 CA ? H CA . ? D CA 102 ? 1_555 O ? L HOH . ? D HOH 139 ? 1_555 151.1 ? 111 O ? K HOH . ? C HOH 119 ? 5_656 CA ? H CA . ? D CA 102 ? 1_555 O ? L HOH . ? D HOH 139 ? 1_555 86.6 ? 112 OP2 ? D U 4 ? D U 31 ? 1_555 CA ? H CA . ? D CA 102 ? 1_555 O ? L HOH . ? D HOH 139 ? 1_555 80.2 ? 113 OP1 ? D C 5 ? D C 32 ? 1_555 CA ? H CA . ? D CA 102 ? 1_555 O ? L HOH . ? D HOH 139 ? 1_555 77.9 ? 114 O ? L HOH . ? D HOH 132 ? 1_555 CA ? H CA . ? D CA 102 ? 1_555 O ? L HOH . ? D HOH 139 ? 1_555 78.9 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software C CA 101 ? 6 'BINDING SITE FOR RESIDUE CA C 101' AC2 Software D CA 102 ? 6 'BINDING SITE FOR RESIDUE CA D 102' AC3 Software A CA 103 ? 7 'BINDING SITE FOR RESIDUE CA A 103' AC4 Software B CA 104 ? 6 'BINDING SITE FOR RESIDUE CA B 104' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH J . ? HOH B 118 . ? 2_765 ? 2 AC1 6 U C 4 ? U C 22 . ? 1_555 ? 3 AC1 6 C C 5 ? C C 23 . ? 1_555 ? 4 AC1 6 HOH K . ? HOH C 110 . ? 1_555 ? 5 AC1 6 HOH K . ? HOH C 141 . ? 1_555 ? 6 AC1 6 C D 9 ? C D 36 . ? 5_756 ? 7 AC2 6 C C 9 ? C C 27 . ? 5_656 ? 8 AC2 6 HOH K . ? HOH C 119 . ? 5_656 ? 9 AC2 6 U D 4 ? U D 31 . ? 1_555 ? 10 AC2 6 C D 5 ? C D 32 . ? 1_555 ? 11 AC2 6 HOH L . ? HOH D 132 . ? 1_555 ? 12 AC2 6 HOH L . ? HOH D 139 . ? 1_555 ? 13 AC3 7 U A 4 ? U A 4 . ? 1_555 ? 14 AC3 7 C A 5 ? C A 5 . ? 1_555 ? 15 AC3 7 HOH I . ? HOH A 179 . ? 1_555 ? 16 AC3 7 HOH I . ? HOH A 234 . ? 1_555 ? 17 AC3 7 C B 9 ? C B 18 . ? 6_565 ? 18 AC3 7 HOH L . ? HOH D 182 . ? 1_555 ? 19 AC3 7 HOH L . ? HOH D 238 . ? 1_555 ? 20 AC4 6 C A 9 ? C A 9 . ? 6_575 ? 21 AC4 6 HOH I . ? HOH A 196 . ? 6_575 ? 22 AC4 6 U B 4 ? U B 13 . ? 1_555 ? 23 AC4 6 C B 5 ? C B 14 . ? 1_555 ? 24 AC4 6 HOH J . ? HOH B 163 . ? 1_555 ? 25 AC4 6 HOH J . ? HOH B 252 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 158 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 220 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id G _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 1 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.056 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A CBR 7 A CBR 7 ? DC ? 2 B CBR 7 B CBR 16 ? DC ? 3 C CBR 7 C CBR 25 ? DC ? 4 D CBR 7 D CBR 34 ? DC ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 CA CA CA N N 73 CBR BR BR N N 74 CBR P P N N 75 CBR OP1 O N N 76 CBR OP2 O N N 77 CBR "O5'" O N N 78 CBR N1 N N N 79 CBR C6 C N N 80 CBR C2 C N N 81 CBR O2 O N N 82 CBR N3 N N N 83 CBR C4 C N N 84 CBR N4 N N N 85 CBR C5 C N N 86 CBR "C2'" C N N 87 CBR "C5'" C N N 88 CBR "C4'" C N R 89 CBR "O4'" O N N 90 CBR "C1'" C N R 91 CBR "C3'" C N S 92 CBR "O3'" O N N 93 CBR OP3 O N N 94 CBR HOP2 H N N 95 CBR H6 H N N 96 CBR H41 H N N 97 CBR H42 H N N 98 CBR "H2'" H N N 99 CBR "H2''" H N N 100 CBR "H5'" H N N 101 CBR "H5''" H N N 102 CBR "H4'" H N N 103 CBR "H1'" H N N 104 CBR "H3'" H N N 105 CBR "HO3'" H N N 106 CBR HOP3 H N N 107 G OP3 O N N 108 G P P N N 109 G OP1 O N N 110 G OP2 O N N 111 G "O5'" O N N 112 G "C5'" C N N 113 G "C4'" C N R 114 G "O4'" O N N 115 G "C3'" C N S 116 G "O3'" O N N 117 G "C2'" C N R 118 G "O2'" O N N 119 G "C1'" C N R 120 G N9 N Y N 121 G C8 C Y N 122 G N7 N Y N 123 G C5 C Y N 124 G C6 C N N 125 G O6 O N N 126 G N1 N N N 127 G C2 C N N 128 G N2 N N N 129 G N3 N N N 130 G C4 C Y N 131 G HOP3 H N N 132 G HOP2 H N N 133 G "H5'" H N N 134 G "H5''" H N N 135 G "H4'" H N N 136 G "H3'" H N N 137 G "HO3'" H N N 138 G "H2'" H N N 139 G "HO2'" H N N 140 G "H1'" H N N 141 G H8 H N N 142 G H1 H N N 143 G H21 H N N 144 G H22 H N N 145 HOH O O N N 146 HOH H1 H N N 147 HOH H2 H N N 148 U OP3 O N N 149 U P P N N 150 U OP1 O N N 151 U OP2 O N N 152 U "O5'" O N N 153 U "C5'" C N N 154 U "C4'" C N R 155 U "O4'" O N N 156 U "C3'" C N S 157 U "O3'" O N N 158 U "C2'" C N R 159 U "O2'" O N N 160 U "C1'" C N R 161 U N1 N N N 162 U C2 C N N 163 U O2 O N N 164 U N3 N N N 165 U C4 C N N 166 U O4 O N N 167 U C5 C N N 168 U C6 C N N 169 U HOP3 H N N 170 U HOP2 H N N 171 U "H5'" H N N 172 U "H5''" H N N 173 U "H4'" H N N 174 U "H3'" H N N 175 U "HO3'" H N N 176 U "H2'" H N N 177 U "HO2'" H N N 178 U "H1'" H N N 179 U H3 H N N 180 U H5 H N N 181 U H6 H N N 182 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 CBR BR C5 sing N N 76 CBR P OP1 doub N N 77 CBR P OP2 sing N N 78 CBR P "O5'" sing N N 79 CBR P OP3 sing N N 80 CBR OP2 HOP2 sing N N 81 CBR "O5'" "C5'" sing N N 82 CBR N1 C6 sing N N 83 CBR N1 C2 sing N N 84 CBR N1 "C1'" sing N N 85 CBR C6 C5 doub N N 86 CBR C6 H6 sing N N 87 CBR C2 O2 doub N N 88 CBR C2 N3 sing N N 89 CBR N3 C4 doub N N 90 CBR C4 N4 sing N N 91 CBR C4 C5 sing N N 92 CBR N4 H41 sing N N 93 CBR N4 H42 sing N N 94 CBR "C2'" "C1'" sing N N 95 CBR "C2'" "C3'" sing N N 96 CBR "C2'" "H2'" sing N N 97 CBR "C2'" "H2''" sing N N 98 CBR "C5'" "C4'" sing N N 99 CBR "C5'" "H5'" sing N N 100 CBR "C5'" "H5''" sing N N 101 CBR "C4'" "O4'" sing N N 102 CBR "C4'" "C3'" sing N N 103 CBR "C4'" "H4'" sing N N 104 CBR "O4'" "C1'" sing N N 105 CBR "C1'" "H1'" sing N N 106 CBR "C3'" "O3'" sing N N 107 CBR "C3'" "H3'" sing N N 108 CBR "O3'" "HO3'" sing N N 109 CBR OP3 HOP3 sing N N 110 G OP3 P sing N N 111 G OP3 HOP3 sing N N 112 G P OP1 doub N N 113 G P OP2 sing N N 114 G P "O5'" sing N N 115 G OP2 HOP2 sing N N 116 G "O5'" "C5'" sing N N 117 G "C5'" "C4'" sing N N 118 G "C5'" "H5'" sing N N 119 G "C5'" "H5''" sing N N 120 G "C4'" "O4'" sing N N 121 G "C4'" "C3'" sing N N 122 G "C4'" "H4'" sing N N 123 G "O4'" "C1'" sing N N 124 G "C3'" "O3'" sing N N 125 G "C3'" "C2'" sing N N 126 G "C3'" "H3'" sing N N 127 G "O3'" "HO3'" sing N N 128 G "C2'" "O2'" sing N N 129 G "C2'" "C1'" sing N N 130 G "C2'" "H2'" sing N N 131 G "O2'" "HO2'" sing N N 132 G "C1'" N9 sing N N 133 G "C1'" "H1'" sing N N 134 G N9 C8 sing Y N 135 G N9 C4 sing Y N 136 G C8 N7 doub Y N 137 G C8 H8 sing N N 138 G N7 C5 sing Y N 139 G C5 C6 sing N N 140 G C5 C4 doub Y N 141 G C6 O6 doub N N 142 G C6 N1 sing N N 143 G N1 C2 sing N N 144 G N1 H1 sing N N 145 G C2 N2 sing N N 146 G C2 N3 doub N N 147 G N2 H21 sing N N 148 G N2 H22 sing N N 149 G N3 C4 sing N N 150 HOH O H1 sing N N 151 HOH O H2 sing N N 152 U OP3 P sing N N 153 U OP3 HOP3 sing N N 154 U P OP1 doub N N 155 U P OP2 sing N N 156 U P "O5'" sing N N 157 U OP2 HOP2 sing N N 158 U "O5'" "C5'" sing N N 159 U "C5'" "C4'" sing N N 160 U "C5'" "H5'" sing N N 161 U "C5'" "H5''" sing N N 162 U "C4'" "O4'" sing N N 163 U "C4'" "C3'" sing N N 164 U "C4'" "H4'" sing N N 165 U "O4'" "C1'" sing N N 166 U "C3'" "O3'" sing N N 167 U "C3'" "C2'" sing N N 168 U "C3'" "H3'" sing N N 169 U "O3'" "HO3'" sing N N 170 U "C2'" "O2'" sing N N 171 U "C2'" "C1'" sing N N 172 U "C2'" "H2'" sing N N 173 U "O2'" "HO2'" sing N N 174 U "C1'" N1 sing N N 175 U "C1'" "H1'" sing N N 176 U N1 C2 sing N N 177 U N1 C6 sing N N 178 U C2 O2 doub N N 179 U C2 N3 sing N N 180 U N3 C4 sing N N 181 U N3 H3 sing N N 182 U C4 O4 doub N N 183 U C4 C5 sing N N 184 U C5 C6 doub N N 185 U C5 H5 sing N N 186 U C6 H6 sing N N 187 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1J9H 'a-form double helix' 1J9H 'bulge loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 9 1_555 -0.265 -0.184 0.434 6.645 -19.030 -0.714 1 A_G1:C18_B A 1 ? B 18 ? 19 1 1 A U 2 1_555 B A 8 1_555 0.082 -0.113 0.298 8.761 -22.781 7.947 2 A_U2:A17_B A 2 ? B 17 ? 20 1 1 A G 3 1_555 B CBR 7 1_555 -0.154 -0.134 -0.039 -0.333 -9.006 -2.129 3 A_G3:CBR16_B A 3 ? B 16 ? 19 1 1 A C 5 1_555 B G 6 1_555 0.169 -0.105 -0.183 1.786 -2.125 1.796 4 A_C5:G15_B A 5 ? B 15 ? 19 1 1 A G 6 1_555 B C 5 1_555 -0.142 -0.101 -0.096 0.179 -0.294 1.612 5 A_G6:C14_B A 6 ? B 14 ? 19 1 1 A CBR 7 1_555 B G 3 1_555 0.089 -0.130 0.116 -2.586 -9.927 -2.170 6 A_CBR7:G12_B A 7 ? B 12 ? 19 1 1 A A 8 1_555 B U 2 1_555 -0.107 -0.140 0.105 -11.305 -24.032 6.958 7 A_A8:U11_B A 8 ? B 11 ? 20 1 1 A C 9 1_555 B G 1 1_555 0.247 -0.241 0.439 -7.910 -18.282 -1.580 8 A_C9:G10_B A 9 ? B 10 ? 19 1 1 C G 1 1_555 D C 9 1_555 -0.188 -0.180 0.484 9.382 -17.250 -1.656 9 C_G19:C36_D C 19 ? D 36 ? 19 1 1 C U 2 1_555 D A 8 1_555 0.157 -0.118 0.125 9.619 -21.615 7.074 10 C_U20:A35_D C 20 ? D 35 ? 20 1 1 C G 3 1_555 D CBR 7 1_555 -0.076 -0.142 -0.021 1.145 -11.652 -2.016 11 C_G21:CBR34_D C 21 ? D 34 ? 19 1 1 C C 5 1_555 D G 6 1_555 0.131 -0.087 -0.104 -2.503 1.546 0.965 12 C_C23:G33_D C 23 ? D 33 ? 19 1 1 C G 6 1_555 D C 5 1_555 -0.158 -0.072 -0.117 0.469 0.239 1.122 13 C_G24:C32_D C 24 ? D 32 ? 19 1 1 C CBR 7 1_555 D G 3 1_555 0.113 -0.149 -0.064 1.608 -10.571 -1.902 14 C_CBR25:G30_D C 25 ? D 30 ? 19 1 1 C A 8 1_555 D U 2 1_555 -0.175 -0.117 0.185 -9.582 -23.447 10.101 15 C_A26:U29_D C 26 ? D 29 ? 20 1 1 C C 9 1_555 D G 1 1_555 0.262 -0.177 0.309 -6.016 -19.520 1.140 16 C_C27:G28_D C 27 ? D 28 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 9 1_555 A U 2 1_555 B A 8 1_555 0.342 -1.015 3.218 -0.520 4.370 33.972 -2.386 -0.660 3.063 7.440 0.885 34.248 1 AA_G1U2:A17C18_BB A 1 ? B 18 ? A 2 ? B 17 ? 1 A U 2 1_555 B A 8 1_555 A G 3 1_555 B CBR 7 1_555 -0.366 -1.490 3.218 1.405 17.635 33.837 -4.255 0.718 2.188 28.047 -2.235 38.063 2 AA_U2G3:CBR16A17_BB A 2 ? B 17 ? A 3 ? B 16 ? 1 A G 3 1_555 B CBR 7 1_555 A C 5 1_555 B G 6 1_555 -2.025 -1.131 3.027 -2.523 6.048 51.032 -1.685 2.175 2.974 6.987 2.914 51.423 3 AA_G3C5:G15CBR16_BB A 3 ? B 16 ? A 5 ? B 15 ? 1 A C 5 1_555 B G 6 1_555 A G 6 1_555 B C 5 1_555 -0.146 -2.088 3.460 -0.771 1.331 28.317 -4.582 0.112 3.363 2.718 1.575 28.358 4 AA_C5G6:C14G15_BB A 5 ? B 15 ? A 6 ? B 14 ? 1 A G 6 1_555 B C 5 1_555 A CBR 7 1_555 B G 3 1_555 2.070 -1.211 3.057 3.040 8.965 50.675 -1.958 -2.191 2.929 10.371 -3.517 51.494 5 AA_G6CBR7:G12C14_BB A 6 ? B 14 ? A 7 ? B 12 ? 1 A CBR 7 1_555 B G 3 1_555 A A 8 1_555 B U 2 1_555 0.498 -1.490 3.269 1.632 18.527 32.860 -4.463 -0.583 2.174 29.952 -2.639 37.632 6 AA_CBR7A8:U11G12_BB A 7 ? B 12 ? A 8 ? B 11 ? 1 A A 8 1_555 B U 2 1_555 A C 9 1_555 B G 1 1_555 -0.224 -1.226 3.190 -0.951 4.471 33.143 -2.833 0.240 3.009 7.792 1.657 33.448 7 AA_A8C9:G10U11_BB A 8 ? B 11 ? A 9 ? B 10 ? 1 C G 1 1_555 D C 9 1_555 C U 2 1_555 D A 8 1_555 0.441 -1.352 3.281 0.976 3.504 33.541 -2.889 -0.604 3.139 6.049 -1.685 33.732 8 CC_G19U20:A35C36_DD C 19 ? D 36 ? C 20 ? D 35 ? 1 C U 2 1_555 D A 8 1_555 C G 3 1_555 D CBR 7 1_555 -0.675 -1.558 3.261 -0.766 18.163 32.766 -4.557 0.965 2.150 29.536 1.246 37.349 9 CC_U20G21:CBR34A35_DD C 20 ? D 35 ? C 21 ? D 34 ? 1 C G 3 1_555 D CBR 7 1_555 C C 5 1_555 D G 6 1_555 -2.192 -1.209 3.172 -3.767 9.639 50.233 -2.038 2.285 3.053 11.217 4.384 51.220 10 CC_G21C23:G33CBR34_DD C 21 ? D 34 ? C 23 ? D 33 ? 1 C C 5 1_555 D G 6 1_555 C G 6 1_555 D C 5 1_555 0.023 -2.060 3.366 0.916 1.537 27.672 -4.674 0.175 3.248 3.210 -1.913 27.728 11 CC_C23G24:C32G33_DD C 23 ? D 33 ? C 24 ? D 32 ? 1 C G 6 1_555 D C 5 1_555 C CBR 7 1_555 D G 3 1_555 2.223 -1.259 3.070 3.031 8.337 49.575 -2.035 -2.413 2.958 9.851 -3.582 50.313 12 CC_G24CBR25:G30C32_DD C 24 ? D 32 ? C 25 ? D 30 ? 1 C CBR 7 1_555 D G 3 1_555 C A 8 1_555 D U 2 1_555 0.486 -1.536 3.337 -0.804 17.276 32.270 -4.627 -0.878 2.243 28.659 1.334 36.503 13 CC_CBR25A26:U29G30_DD C 25 ? D 30 ? C 26 ? D 29 ? 1 C A 8 1_555 D U 2 1_555 C C 9 1_555 D G 1 1_555 -0.603 -1.170 3.130 0.070 5.714 33.998 -2.799 1.029 2.900 9.687 -0.119 34.461 14 CC_A26C27:G28U29_DD C 26 ? D 29 ? C 27 ? D 28 ? # _atom_sites.entry_id 1J9H _atom_sites.fract_transf_matrix[1][1] 0.021195 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021195 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012494 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C CA N O P # loop_