data_1J9V # _entry.id 1J9V # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1J9V pdb_00001j9v 10.2210/pdb1j9v/pdb RCSB RCSB013541 ? ? WWPDB D_1000013541 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1IM7 'THE 1IM7 entry contains the parent peptides coordinates.' unspecified PDB 1J8N 'The 1J8N entry contains the beta3-Ser analogue peptide (HSER)' unspecified PDB 1J8Z 'The 1J8Z entry contains the beta3-Cys analogue peptide (HCYS)' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1J9V _pdbx_database_status.recvd_initial_deposition_date 2001-05-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Phan Chan Du, A.' 1 'Limal, D.' 2 'Semetey, V.' 3 'Dali, H.' 4 'Jolivet, M.' 5 'Desgranges, C.' 6 'Cung, M.T.' 7 'Briand, J.P.' 8 'Petit, M.C.' 9 'Muller, S.' 10 # _citation.id primary _citation.title ;Structural and immunological characterisation of heteroclitic peptide analogues corresponding to the 600-612 region of the HIV envelope gp41 glycoprotein. ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 323 _citation.page_first 503 _citation.page_last 521 _citation.year 2002 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12381305 _citation.pdbx_database_id_DOI '10.1016/S0022-2836(02)00701-5' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Du, A.P.' 1 ? primary 'Limal, D.' 2 ? primary 'Semetey, V.' 3 ? primary 'Dali, H.' 4 ? primary 'Jolivet, M.' 5 ? primary 'Desgranges, C.' 6 ? primary 'Cung, M.T.' 7 ? primary 'Briand, J.P.' 8 ? primary 'Petit, M.C.' 9 ? primary 'Muller, S.' 10 ? # _cell.entry_id 1J9V _cell.length_a ? _cell.length_b ? _cell.length_c ? _cell.angle_alpha ? _cell.angle_beta ? _cell.angle_gamma ? _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'DabD (Ace)IWG(DAB)SGKLIDTTA ANALOGUE OF HIV GP41' _entity.formula_weight 1388.589 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)IWG(DAB)SGKLIDTTA' _entity_poly.pdbx_seq_one_letter_code_can XIWGASGKLIDTTA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 ILE n 1 3 TRP n 1 4 GLY n 1 5 DAB n 1 6 SER n 1 7 GLY n 1 8 LYS n 1 9 LEU n 1 10 ILE n 1 11 ASP n 1 12 THR n 1 13 THR n 1 14 ALA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'The parent peptide (IWGCSGKLICTTA) occurs in HIV gp41 glycoprotein.' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ENV_HV1BN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code IWGCSGKLICTTA _struct_ref.pdbx_align_begin 591 _struct_ref.pdbx_db_accession P12488 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1J9V _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 14 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P12488 _struct_ref_seq.db_align_beg 591 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 603 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 14 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1J9V ACE A 1 ? UNP P12488 ? ? insertion 1 1 1 1J9V DAB A 5 ? UNP P12488 CYS 594 'engineered mutation' 5 2 1 1J9V ASP A 11 ? UNP P12488 CYS 600 'engineered mutation' 11 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DAB 'L-peptide linking' n '2,4-DIAMINOBUTYRIC ACID' ? 'C4 H10 N2 O2' 118.134 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 DQF-COSY 2 1 1 '2D NOESY' 3 2 2 TOCSY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH ? _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '3,5 mM peptide in 500ul DMSO-D6' _pdbx_nmr_sample_details.solvent_system DMSO-D6 # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Bruker AVANCE 400 2 ? Bruker AVANCE 600 # _pdbx_nmr_refine.entry_id 1J9V _pdbx_nmr_refine.method 'Torsion angle dinamics, molecular dynamics, energy minimization.' _pdbx_nmr_refine.details ;50 INITIAL RANDOM STRUCTURES WERE GENERATED USING SIMULATED ANNEALING IN DYANA SOFTWARE, FOLLOWED BY 500PS RESTRAINED MINIMIZATION, 35PS MD IN VACUO AT 300K, 200 PS MD UNDER NMR RESTRAINTS AND 750 STEPS CONJUGATED GRADIENT EM USING DISCOVER OF MSI SOFTWARE ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1J9V _pdbx_nmr_details.text ;This structure was determined using standard 2D homonuclear techniques. Different NOESY experiments with mixing times from 80 ms to 800 ms were recorded, in order to determined the best conditions avoiding spin diffusion. ; # _pdbx_nmr_ensemble.entry_id 1J9V _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 49 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1J9V _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal XwinNMR 2.6 collection 'Bruker GMBH' 1 XwinNMR 2.6 processing 'Bruker GMBH' 2 XEASY 1.2 'data analysis' 'Bartels C., Xia T., Billeter M., Guentert P. and Wuethrich K. (1995) J. Biomol. NMR, 5, 1-10' 3 DYANA 1.5 refinement 'Guentert P., Mumenthaler C. and Wuethrich K. (1997) J. Mol. Biol. 273, 283-298' 4 Discover 3 refinement 'Molecular Simulation Inc. San Diego' 5 # _exptl.entry_id 1J9V _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1J9V _struct.title 'Solution structure of a lactam analogue (DabD) of HIV gp41 600-612 loop.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1J9V _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'lactam peptide, lactam bond, HIV, gp41, cyclic peptide, Viral protein' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A ILE 2 N ? ? A ACE 1 A ILE 2 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale2 covale both ? A GLY 4 C ? ? ? 1_555 A DAB 5 N ? ? A GLY 4 A DAB 5 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale3 covale both ? A DAB 5 C ? ? ? 1_555 A SER 6 N ? ? A DAB 5 A SER 6 1_555 ? ? ? ? ? ? ? 1.344 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1J9V _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1J9V _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 1 1 ACE ACE A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 TRP 3 3 3 TRP TRP A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 DAB 5 5 5 DAB DAB A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 ALA 14 14 14 ALA ALA A . n # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id DAB _pdbx_struct_mod_residue.label_seq_id 5 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id DAB _pdbx_struct_mod_residue.auth_seq_id 5 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ALA _pdbx_struct_mod_residue.details '2,4-DIAMINOBUTYRIC ACID' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-07-01 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-10-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 2 2 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 3 3 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 4 4 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 5 5 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 6 6 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 7 7 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 8 8 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 9 9 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 10 10 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 11 11 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 12 12 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.35 13 13 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 14 14 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 15 15 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.35 16 16 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.35 17 17 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 18 18 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 19 19 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 20 20 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 21 21 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 22 22 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 23 23 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 24 24 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 25 25 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 26 26 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 27 27 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 28 28 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 29 29 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 30 30 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 31 31 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 32 32 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 33 33 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 34 34 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 35 35 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 36 36 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.35 37 37 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 38 38 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 39 39 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 40 40 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.35 41 41 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.35 42 42 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 43 43 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 44 44 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.35 45 45 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 46 46 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.35 47 47 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.35 48 48 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 49 49 ND A DAB 5 ? ? CG A ASP 11 ? ? 1.34 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.381 1.229 0.152 0.019 N 2 2 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.381 1.229 0.152 0.019 N 3 3 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.383 1.229 0.154 0.019 N 4 4 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.384 1.229 0.155 0.019 N 5 5 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.384 1.229 0.155 0.019 N 6 6 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.383 1.229 0.154 0.019 N 7 7 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.384 1.229 0.155 0.019 N 8 8 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.383 1.229 0.154 0.019 N 9 9 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.383 1.229 0.154 0.019 N 10 10 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.382 1.229 0.153 0.019 N 11 11 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.374 1.229 0.145 0.019 N 12 12 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.374 1.229 0.145 0.019 N 13 13 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.373 1.229 0.144 0.019 N 14 14 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.371 1.229 0.142 0.019 N 15 15 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.371 1.229 0.142 0.019 N 16 16 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.371 1.229 0.142 0.019 N 17 17 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.371 1.229 0.142 0.019 N 18 18 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.370 1.229 0.141 0.019 N 19 19 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.374 1.229 0.145 0.019 N 20 20 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.372 1.229 0.143 0.019 N 21 21 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.373 1.229 0.144 0.019 N 22 22 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.372 1.229 0.143 0.019 N 23 23 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.372 1.229 0.143 0.019 N 24 24 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.373 1.229 0.144 0.019 N 25 25 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.372 1.229 0.143 0.019 N 26 26 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.372 1.229 0.143 0.019 N 27 27 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.371 1.229 0.142 0.019 N 28 28 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.371 1.229 0.142 0.019 N 29 29 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.372 1.229 0.143 0.019 N 30 30 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.372 1.229 0.143 0.019 N 31 31 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.371 1.229 0.142 0.019 N 32 32 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.372 1.229 0.143 0.019 N 33 33 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.373 1.229 0.144 0.019 N 34 34 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.373 1.229 0.144 0.019 N 35 35 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.373 1.229 0.144 0.019 N 36 36 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.374 1.229 0.145 0.019 N 37 37 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.375 1.229 0.146 0.019 N 38 38 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.375 1.229 0.146 0.019 N 39 39 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.376 1.229 0.147 0.019 N 40 40 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.376 1.229 0.147 0.019 N 41 41 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.372 1.229 0.143 0.019 N 42 42 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.373 1.229 0.144 0.019 N 43 43 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.374 1.229 0.145 0.019 N 44 44 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.371 1.229 0.142 0.019 N 45 45 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.372 1.229 0.143 0.019 N 46 46 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.372 1.229 0.143 0.019 N 47 47 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.372 1.229 0.143 0.019 N 48 48 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.372 1.229 0.143 0.019 N 49 49 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.372 1.229 0.143 0.019 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 8 ? ? -157.16 -67.51 2 2 LYS A 8 ? ? -156.97 -67.63 3 3 LYS A 8 ? ? -157.02 -67.46 4 4 LYS A 8 ? ? -159.50 -66.57 5 5 LYS A 8 ? ? -159.12 -66.55 6 6 LYS A 8 ? ? -158.59 -67.53 7 7 LYS A 8 ? ? -158.82 -67.31 8 8 LYS A 8 ? ? -163.59 -61.20 9 9 LYS A 8 ? ? -159.39 -66.85 10 10 LYS A 8 ? ? -157.50 -66.66 11 11 LYS A 8 ? ? -158.03 -67.73 12 11 THR A 12 ? ? -94.06 -69.17 13 12 LYS A 8 ? ? -142.69 -80.98 14 12 ASP A 11 ? ? -109.95 76.44 15 13 LYS A 8 ? ? -156.63 -70.38 16 14 LYS A 8 ? ? -159.28 -68.09 17 14 THR A 12 ? ? -98.78 -83.32 18 15 LYS A 8 ? ? -150.88 -72.28 19 15 ASP A 11 ? ? -108.48 75.50 20 15 THR A 12 ? ? -80.52 -79.95 21 16 LYS A 8 ? ? -139.82 -80.08 22 16 ASP A 11 ? ? -103.81 73.42 23 17 LYS A 8 ? ? -158.39 -68.65 24 17 THR A 12 ? ? -97.41 -81.80 25 18 LYS A 8 ? ? -146.55 -79.26 26 19 LYS A 8 ? ? -159.06 -68.84 27 19 THR A 12 ? ? -98.39 -83.29 28 20 LYS A 8 ? ? -159.05 -68.66 29 21 SER A 6 ? ? -98.00 -70.17 30 21 LYS A 8 ? ? -150.27 -72.11 31 21 THR A 12 ? ? -132.86 -57.86 32 22 SER A 6 ? ? -110.65 -76.21 33 22 LYS A 8 ? ? -132.15 -68.49 34 23 SER A 6 ? ? -112.71 -75.32 35 23 LYS A 8 ? ? -146.68 -71.60 36 24 SER A 6 ? ? -95.70 -75.35 37 24 LYS A 8 ? ? -142.80 -73.56 38 24 THR A 12 ? ? -152.49 -52.12 39 24 THR A 13 ? ? -128.21 -59.09 40 25 SER A 6 ? ? -95.34 -75.85 41 25 LYS A 8 ? ? -135.72 -68.88 42 25 THR A 12 ? ? -156.91 -50.40 43 26 LYS A 8 ? ? -159.35 -64.87 44 26 THR A 12 ? ? -158.28 -46.01 45 26 THR A 13 ? ? -131.88 -64.74 46 27 LYS A 8 ? ? -161.89 -57.88 47 27 THR A 12 ? ? -151.09 -70.71 48 27 THR A 13 ? ? -102.70 -66.12 49 28 LYS A 8 ? ? -162.36 -57.60 50 28 THR A 12 ? ? -152.07 -68.92 51 28 THR A 13 ? ? -103.54 -66.56 52 29 LYS A 8 ? ? -158.31 -66.28 53 29 THR A 12 ? ? -158.06 -50.81 54 30 LYS A 8 ? ? -158.56 -65.66 55 30 THR A 12 ? ? -158.12 -46.05 56 30 THR A 13 ? ? -130.42 -66.77 57 31 LYS A 8 ? ? -158.15 -66.24 58 31 THR A 12 ? ? -158.16 -47.07 59 31 THR A 13 ? ? -131.12 -64.90 60 32 LYS A 8 ? ? -157.71 -66.78 61 32 THR A 12 ? ? -158.95 -47.34 62 32 THR A 13 ? ? -126.55 -67.82 63 33 LYS A 8 ? ? -156.92 -64.64 64 33 ASP A 11 ? ? -116.14 65.51 65 33 THR A 12 ? ? -156.01 -75.85 66 34 LYS A 8 ? ? -158.82 -62.74 67 34 THR A 12 ? ? -140.43 -65.85 68 35 SER A 6 ? ? -154.33 78.50 69 35 LYS A 8 ? ? -153.23 -74.94 70 36 LYS A 8 ? ? -152.47 -74.18 71 37 SER A 6 ? ? -154.95 81.21 72 37 LYS A 8 ? ? -152.80 -75.28 73 38 SER A 6 ? ? -154.90 80.46 74 38 LYS A 8 ? ? -152.28 -75.32 75 39 SER A 6 ? ? -156.11 82.03 76 39 LYS A 8 ? ? -152.36 -74.90 77 40 SER A 6 ? ? -163.22 81.52 78 40 LYS A 8 ? ? -139.33 -80.22 79 41 SER A 6 ? ? -161.35 79.51 80 41 LYS A 8 ? ? -137.33 -80.98 81 42 LYS A 8 ? ? -159.02 -67.73 82 43 LYS A 8 ? ? -154.63 -69.25 83 43 THR A 12 ? ? -73.62 -72.60 84 44 LYS A 8 ? ? -153.49 -70.91 85 44 ASP A 11 ? ? -116.41 68.93 86 44 THR A 12 ? ? -152.76 -54.36 87 45 LYS A 8 ? ? -154.92 -70.41 88 45 ASP A 11 ? ? -119.18 69.99 89 45 THR A 12 ? ? -155.19 -68.48 90 46 LYS A 8 ? ? -154.95 -70.29 91 46 ASP A 11 ? ? -119.68 70.16 92 46 THR A 12 ? ? -154.24 -66.13 93 47 TRP A 3 ? ? -149.77 22.76 94 47 SER A 6 ? ? -151.91 81.69 95 47 LYS A 8 ? ? -137.07 -77.79 96 47 LEU A 9 ? ? -115.29 60.64 97 47 ASP A 11 ? ? -114.17 75.00 98 47 THR A 12 ? ? -145.51 -82.78 99 48 LYS A 8 ? ? -158.42 -65.43 100 48 ASP A 11 ? ? -105.79 71.53 101 49 LYS A 8 ? ? -159.82 -67.84 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 2 2 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 3 3 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 4 4 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 5 5 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 6 6 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 7 7 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 8 8 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 9 9 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 10 10 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 11 11 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 12 12 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 13 13 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 14 14 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 15 15 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 16 16 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 17 17 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 18 18 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 19 19 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 20 20 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 21 21 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 22 22 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 23 23 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 24 24 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 25 25 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 26 26 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 27 27 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 28 28 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 29 29 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 30 30 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 31 31 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 32 32 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 33 33 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 34 34 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 35 35 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 36 36 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 37 37 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 38 38 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 39 39 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 40 40 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 41 41 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 42 42 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 43 43 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 44 44 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 45 45 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 46 46 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 47 47 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 48 48 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 49 49 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 #