HEADER VIRAL PROTEIN 30-MAY-01 1JAJ TITLE SOLUTION STRUCTURE OF DNA POLYMERASE X FROM THE AFRICAN SWINE FEVER TITLE 2 VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE BETA-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AFRICAN SWINE FEVER VIRUS; SOURCE 3 ORGANISM_TAXID: 10498; SOURCE 4 STRAIN: BA71V; SOURCE 5 GENE: O174L; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET23A KEYWDS CIS PEPTIDE, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR M.W.MACIEJEWSKI,R.SHIN,B.PAN,G.P.MULLEN REVDAT 5 05-FEB-20 1JAJ 1 REMARK ATOM REVDAT 4 13-JUL-11 1JAJ 1 VERSN REVDAT 3 24-FEB-09 1JAJ 1 VERSN REVDAT 2 07-NOV-01 1JAJ 1 AUTHOR REVDAT 1 31-OCT-01 1JAJ 0 JRNL AUTH M.W.MACIEJEWSKI,R.SHIN,B.PAN,A.MARINTCHEV,A.DENNINGER JRNL TITL SOLUTION STRUCTURE OF A VIRAL DNA REPAIR POLYMERASE. JRNL REF NAT.STRUCT.BIOL. V. 8 936 2001 JRNL REFN ISSN 1072-8368 JRNL PMID 11685238 JRNL DOI 10.1038/NSB1101-936 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.W.MACIEJEWSKI,B.PAN,R.SHIN,A.DENNINGER,G.P.MULLEN REMARK 1 TITL 1H, 15N, AND 13C RESONANCE ASSIGNMENTS FOR A 20 KDA DNA REMARK 1 TITL 2 POLYMERASE FROM AFRICAN SWINE FEVER VIRUS REMARK 1 REF J.BIOMOL.NMR V. 21 177 2001 REMARK 1 REFN ISSN 0925-2738 REMARK 1 DOI 10.1023/A:1012426928104 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1B, X-PLOR 3.851 REMARK 3 AUTHORS : VARIAN, INC. (VNMR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 200 RANDOM STRUCUTRES WERE CALCULATED WITHIN DYANA. THE 50 WITH REMARK 3 THE LOWEST TARGET FUNCTION WERE REMARK 3 REFINED IN XPLOR WITH ENERGY MINIMIZATION AND THE 25 WITH THE REMARK 3 LOWEST ENERGY IN XPLOR WERE SELECTED REMARK 3 FOR DEPOSITION. REMARK 4 REMARK 4 1JAJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-01. REMARK 100 THE DEPOSITION ID IS D_1000013559. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298; 298; 298 REMARK 210 PH : 6.5; 6.5; 6.5; 6.5 REMARK 210 IONIC STRENGTH : 500 MM; 500 MM; 500 MM; 500 MM REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT; REMARK 210 AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM DNA POLYMERASE X U REMARK 210 -15N,13C; 500 MM NACL; 20 MM REMARK 210 PIPES (PH 6.5); 10 MM DTT; 0.5 REMARK 210 MM AEBSF; 0.02% SODIUM AZIDE; REMARK 210 1.0 MM DNA POLYMERASE X U-15N, REMARK 210 13C; 500 MM NACL; 20 MM PIPES REMARK 210 (PH 6.5); 10 MM DTT; 0.5 MM REMARK 210 AEBSF; 0.02% SODIUM AZIDE; 1.0 REMARK 210 MM DNA POLYMERASE X U-15N; 500 REMARK 210 MM NACL; 20 MM PIPES (PH 6.5); REMARK 210 10 MM DTT; 0.5 MM AEBSF; 0.02% REMARK 210 SODIUM AZIDE; 1.0 MM DNA REMARK 210 POLYMERASE X; 500 MM NACL; 20 MM REMARK 210 PIPES (PH 6.5); 10 MM DTT; 0.5 REMARK 210 MM AEBSF; 0.02% SODIUM AZIDE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; HNHA; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1.8, XEASY 1.13, DYANA REMARK 210 1.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS ENERGY REMARK 210 MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: TALOS WAS USED IN CONJUNCTION WITH BACKBONE RESONANCE REMARK 210 ASSIGNMENTS TO GENERATE ANGLE CONSTRAINTS. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 17 31.75 -98.08 REMARK 500 1 GLU A 43 66.04 60.44 REMARK 500 1 GLU A 58 132.60 -177.36 REMARK 500 1 ASN A 68 54.19 -114.24 REMARK 500 1 PHE A 76 165.96 179.14 REMARK 500 1 GLU A 83 75.69 63.49 REMARK 500 1 ARG A 84 35.86 33.80 REMARK 500 1 PRO A 119 -175.98 -62.52 REMARK 500 1 LYS A 172 32.79 -90.01 REMARK 500 1 ARG A 173 129.72 -33.77 REMARK 500 2 GLU A 43 65.32 61.63 REMARK 500 2 ASN A 48 -48.65 -139.52 REMARK 500 2 GLU A 58 128.10 -177.09 REMARK 500 2 PRO A 67 -72.60 -69.13 REMARK 500 2 ASN A 68 55.73 -106.82 REMARK 500 2 PHE A 76 157.97 178.94 REMARK 500 2 GLU A 83 72.92 66.30 REMARK 500 2 ARG A 84 32.93 39.51 REMARK 500 2 GLU A 93 63.42 64.31 REMARK 500 2 PRO A 119 -172.73 -62.45 REMARK 500 2 LYS A 172 31.17 -93.71 REMARK 500 3 ARG A 17 33.10 -94.67 REMARK 500 3 GLU A 43 65.70 61.75 REMARK 500 3 PRO A 67 -77.00 -70.24 REMARK 500 3 ASN A 68 56.12 -105.92 REMARK 500 3 GLU A 83 72.29 66.99 REMARK 500 3 ARG A 84 33.22 38.92 REMARK 500 3 GLU A 93 63.50 63.14 REMARK 500 3 PRO A 119 -162.51 -76.73 REMARK 500 3 LYS A 171 31.64 -97.73 REMARK 500 3 LYS A 172 31.33 -97.46 REMARK 500 3 ARG A 173 99.64 -39.68 REMARK 500 4 ARG A 17 31.64 -93.53 REMARK 500 4 GLU A 58 129.97 -175.75 REMARK 500 4 PRO A 67 -75.51 -73.02 REMARK 500 4 ASN A 68 57.81 -107.09 REMARK 500 4 PHE A 76 165.04 179.95 REMARK 500 4 GLU A 83 73.84 65.75 REMARK 500 4 ARG A 84 34.73 36.60 REMARK 500 4 GLU A 93 63.52 63.59 REMARK 500 4 PRO A 119 -161.67 -76.78 REMARK 500 4 LEU A 151 98.03 -69.20 REMARK 500 4 LYS A 172 31.21 -95.25 REMARK 500 4 ARG A 173 98.94 -42.80 REMARK 500 5 GLU A 43 65.96 61.00 REMARK 500 5 ASN A 48 -77.39 -95.19 REMARK 500 5 GLU A 58 131.05 -177.31 REMARK 500 5 PRO A 67 -72.98 -68.38 REMARK 500 5 ASN A 68 55.85 -110.63 REMARK 500 5 GLU A 83 67.96 68.87 REMARK 500 REMARK 500 THIS ENTRY HAS 260 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5010 RELATED DB: BMRB REMARK 900 BMRB RELEASE 5010 CONTAINS THE COMPLETE 1H, 15N, AND 13C RESONANCE REMARK 900 ASSIGNMENTS FOR AFRICAN SWINE FEVER VIRUS POLYMERASE X DBREF 1JAJ A 1 174 UNP P42494 O174_ASFB7 1 174 SEQRES 1 A 174 MET LEU THR LEU ILE GLN GLY LYS LYS ILE VAL ASN HIS SEQRES 2 A 174 LEU ARG SER ARG LEU ALA PHE GLU TYR ASN GLY GLN LEU SEQRES 3 A 174 ILE LYS ILE LEU SER LYS ASN ILE VAL ALA VAL GLY SER SEQRES 4 A 174 LEU ARG ARG GLU GLU LYS MET LEU ASN ASP VAL ASP LEU SEQRES 5 A 174 LEU ILE ILE VAL PRO GLU LYS LYS LEU LEU LYS HIS VAL SEQRES 6 A 174 LEU PRO ASN ILE ARG ILE LYS GLY LEU SER PHE SER VAL SEQRES 7 A 174 LYS VAL CYS GLY GLU ARG LYS CYS VAL LEU PHE ILE GLU SEQRES 8 A 174 TRP GLU LYS LYS THR TYR GLN LEU ASP LEU PHE THR ALA SEQRES 9 A 174 LEU ALA GLU GLU LYS PRO TYR ALA ILE PHE HIS PHE THR SEQRES 10 A 174 GLY PRO VAL SER TYR LEU ILE ARG ILE ARG ALA ALA LEU SEQRES 11 A 174 LYS LYS LYS ASN TYR LYS LEU ASN GLN TYR GLY LEU PHE SEQRES 12 A 174 LYS ASN GLN THR LEU VAL PRO LEU LYS ILE THR THR GLU SEQRES 13 A 174 LYS GLU LEU ILE LYS GLU LEU GLY PHE THR TYR ARG ILE SEQRES 14 A 174 PRO LYS LYS ARG LEU HELIX 1 1 LEU A 4 ARG A 17 1 14 HELIX 2 2 SER A 39 GLU A 43 1 5 HELIX 3 3 GLU A 58 HIS A 64 1 7 HELIX 4 4 GLU A 108 GLY A 118 1 11 HELIX 5 5 PRO A 119 LYS A 133 1 15 HELIX 6 6 THR A 155 GLY A 164 1 10 HELIX 7 7 ILE A 169 ARG A 173 5 5 SHEET 1 A 2 LEU A 2 THR A 3 0 SHEET 2 A 2 MET A 46 LEU A 47 -1 N LEU A 47 O LEU A 2 SHEET 1 B 3 GLN A 25 ILE A 29 0 SHEET 2 B 3 LEU A 18 TYR A 22 -1 O LEU A 18 N ILE A 29 SHEET 3 B 3 ASN A 68 ILE A 71 -1 N ASN A 68 O GLU A 21 SHEET 1 C 5 ILE A 34 GLY A 38 0 SHEET 2 C 5 VAL A 50 VAL A 56 -1 O ASP A 51 N VAL A 37 SHEET 3 C 5 TYR A 97 LEU A 105 1 O GLN A 98 N VAL A 50 SHEET 4 C 5 LYS A 85 GLU A 91 -1 O CYS A 86 N LEU A 101 SHEET 5 C 5 SER A 75 CYS A 81 -1 O SER A 75 N GLU A 91 SHEET 1 D 3 TYR A 135 ASN A 138 0 SHEET 2 D 3 GLY A 141 LYS A 144 -1 O GLY A 141 N ASN A 138 SHEET 3 D 3 THR A 147 VAL A 149 -1 O THR A 147 N LYS A 144 CISPEP 1 GLY A 118 PRO A 119 1 -0.07 CISPEP 2 GLY A 118 PRO A 119 2 -0.30 CISPEP 3 GLY A 118 PRO A 119 3 -0.06 CISPEP 4 GLY A 118 PRO A 119 4 -0.20 CISPEP 5 GLY A 118 PRO A 119 5 -0.05 CISPEP 6 GLY A 118 PRO A 119 6 -0.14 CISPEP 7 GLY A 118 PRO A 119 7 0.12 CISPEP 8 GLY A 118 PRO A 119 8 -0.02 CISPEP 9 GLY A 118 PRO A 119 9 -0.12 CISPEP 10 GLY A 118 PRO A 119 10 0.09 CISPEP 11 GLY A 118 PRO A 119 11 0.02 CISPEP 12 GLY A 118 PRO A 119 12 -0.37 CISPEP 13 GLY A 118 PRO A 119 13 -0.18 CISPEP 14 GLY A 118 PRO A 119 14 -0.17 CISPEP 15 GLY A 118 PRO A 119 15 -0.23 CISPEP 16 GLY A 118 PRO A 119 16 -0.06 CISPEP 17 GLY A 118 PRO A 119 17 -0.05 CISPEP 18 GLY A 118 PRO A 119 18 -0.27 CISPEP 19 GLY A 118 PRO A 119 19 -0.18 CISPEP 20 GLY A 118 PRO A 119 20 -0.24 CISPEP 21 GLY A 118 PRO A 119 21 0.05 CISPEP 22 GLY A 118 PRO A 119 22 -0.04 CISPEP 23 GLY A 118 PRO A 119 23 -0.21 CISPEP 24 GLY A 118 PRO A 119 24 0.01 CISPEP 25 GLY A 118 PRO A 119 25 -0.11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1