HEADER PROLINE PEPTIDASE 22-DEC-97 1JAW TITLE AMINOPEPTIDASE P FROM E. COLI LOW PH FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOPEPTIDASE P; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AMPP; COMPND 5 EC: 3.4.11.9; COMPND 6 OTHER_DETAILS: ACTIVE SITE 2 MANGANESE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: AN1459/PPL670; SOURCE 5 CELLULAR_LOCATION: CYTOPLASM KEYWDS PROLINE PEPTIDASE, HYDROLASE, AMINOPEPTIDASE EXPDTA X-RAY DIFFRACTION AUTHOR M.C.J.WILCE,C.S.BOND,P.E.LILLEY,N.E.DIXON,H.C.FREEMAN,J.M.GUSS REVDAT 3 07-FEB-24 1JAW 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1JAW 1 VERSN REVDAT 1 06-APR-99 1JAW 0 JRNL AUTH M.C.WILCE,C.S.BOND,N.E.DIXON,H.C.FREEMAN,J.M.GUSS, JRNL AUTH 2 P.E.LILLEY,J.A.WILCE JRNL TITL STRUCTURE AND MECHANISM OF A PROLINE-SPECIFIC AMINOPEPTIDASE JRNL TITL 2 FROM ESCHERICHIA COLI. JRNL REF PROC.NATL.ACAD.SCI.USA V. 95 3472 1998 JRNL REFN ISSN 0027-8424 JRNL PMID 9520390 JRNL DOI 10.1073/PNAS.95.7.3472 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 83.1 REMARK 3 NUMBER OF REFLECTIONS : 26338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1312 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2652 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 80 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3500 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 262 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : 1.400 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.100 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.700 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 5.100 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 7.300 ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARAMETER.ELEMENTS REMARK 3 PARAMETER FILE 3 : PARAM19.SOL REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPOLOGY.ELEMENTS REMARK 3 TOPOLOGY FILE 3 : TOPH19.SOL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JAW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000174304. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : AUG-96 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58976 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 19.20 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : 0.05100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.9 REMARK 200 DATA REDUNDANCY IN SHELL : 15.00 REMARK 200 R MERGE FOR SHELL (I) : 0.19700 REMARK 200 R SYM FOR SHELL (I) : 0.19700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: X-PLOR 3.8 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.3 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 69.85500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 69.85500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 115.43500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 69.85500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.71750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 69.85500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 173.15250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 69.85500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 173.15250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.85500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 57.71750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 69.85500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 69.85500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 115.43500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 69.85500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 69.85500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 115.43500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 69.85500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 173.15250 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 69.85500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 57.71750 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 69.85500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 57.71750 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 69.85500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 173.15250 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 69.85500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 69.85500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 115.43500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 260 CA ASP A 260 CB -0.157 REMARK 500 ASP A 260 CA ASP A 260 C 0.301 REMARK 500 GLY A 270 C ASP A 271 N 0.275 REMARK 500 ASP A 271 N ASP A 271 CA 0.174 REMARK 500 ASP A 271 CA ASP A 271 CB -0.184 REMARK 500 ASP A 271 CG ASP A 271 OD2 0.163 REMARK 500 ASP A 271 CA ASP A 271 C -0.231 REMARK 500 SER A 353 C HIS A 354 N 0.149 REMARK 500 HIS A 354 C HIS A 354 O 0.160 REMARK 500 GLU A 383 C GLU A 383 O 0.325 REMARK 500 ILE A 405 C GLU A 406 N 0.287 REMARK 500 GLU A 406 CB GLU A 406 CG -0.333 REMARK 500 GLU A 406 CG GLU A 406 CD -0.096 REMARK 500 GLU A 406 CD GLU A 406 OE1 0.175 REMARK 500 GLU A 406 CD GLU A 406 OE2 0.141 REMARK 500 GLU A 406 CA GLU A 406 C 0.193 REMARK 500 GLU A 406 C ASP A 407 N -0.268 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 270 O - C - N ANGL. DEV. = -17.3 DEGREES REMARK 500 ASP A 271 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 PRO A 346 C - N - CA ANGL. DEV. = -16.1 DEGREES REMARK 500 PRO A 346 C - N - CD ANGL. DEV. = 17.4 DEGREES REMARK 500 HIS A 354 O - C - N ANGL. DEV. = 13.6 DEGREES REMARK 500 ILE A 405 O - C - N ANGL. DEV. = -14.9 DEGREES REMARK 500 GLU A 406 OE1 - CD - OE2 ANGL. DEV. = -12.2 DEGREES REMARK 500 ASP A 407 C - N - CA ANGL. DEV. = 17.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 36 118.53 -172.70 REMARK 500 ALA A 37 -113.55 53.44 REMARK 500 ASN A 56 47.33 -85.48 REMARK 500 TRP A 88 -71.34 -75.46 REMARK 500 HIS A 243 72.54 -107.65 REMARK 500 ASN A 247 44.36 34.02 REMARK 500 LYS A 439 -76.32 -71.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 260 11.62 REMARK 500 GLY A 270 13.80 REMARK 500 SER A 353 -13.00 REMARK 500 VAL A 382 16.71 REMARK 500 ILE A 405 25.05 REMARK 500 GLU A 406 13.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 442 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 260 OD1 REMARK 620 2 ASP A 260 OD2 55.9 REMARK 620 3 ASP A 271 OD1 87.1 133.5 REMARK 620 4 GLU A 406 OE1 95.1 114.6 94.0 REMARK 620 5 ACT A 443 O 147.5 92.9 113.5 107.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 441 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 271 OD2 REMARK 620 2 HIS A 354 NE2 82.7 REMARK 620 3 GLU A 383 OE2 153.6 79.6 REMARK 620 4 GLU A 406 OE2 91.3 119.2 80.6 REMARK 620 5 ACT A 443 O 97.3 112.6 107.5 128.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: NUL REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: THESE RESIDUES (INCLUDING ACETATE - ACE) REMARK 800 COORDINATE THE MN IONS. REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 441 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 442 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 443 DBREF 1JAW A 1 440 UNP P15034 AMPP_ECOLI 1 440 SEQADV 1JAW TYR A 89 UNP P15034 PHE 89 CONFLICT SEQRES 1 A 440 SER GLU ILE SER ARG GLN GLU PHE GLN ARG ARG ARG GLN SEQRES 2 A 440 ALA LEU VAL GLU GLN MET GLN PRO GLY SER ALA ALA LEU SEQRES 3 A 440 ILE PHE ALA ALA PRO GLU VAL THR ARG SER ALA ASP SER SEQRES 4 A 440 GLU TYR PRO TYR ARG GLN ASN SER ASP PHE TRP TYR PHE SEQRES 5 A 440 THR GLY PHE ASN GLU PRO GLU ALA VAL LEU VAL LEU ILE SEQRES 6 A 440 LYS SER ASP ASP THR HIS ASN HIS SER VAL LEU PHE ASN SEQRES 7 A 440 ARG VAL ARG ASP LEU THR ALA GLU ILE TRP TYR GLY ARG SEQRES 8 A 440 ARG LEU GLY GLN ASP ALA ALA PRO GLU LYS LEU GLY VAL SEQRES 9 A 440 ASP ARG ALA LEU ALA PHE SER GLU ILE ASN GLN GLN LEU SEQRES 10 A 440 TYR GLN LEU LEU ASN GLY LEU ASP VAL VAL TYR HIS ALA SEQRES 11 A 440 GLN GLY GLU TYR ALA TYR ALA ASP VAL ILE VAL ASN SER SEQRES 12 A 440 ALA LEU GLU LYS LEU ARG LYS GLY SER ARG GLN ASN LEU SEQRES 13 A 440 THR ALA PRO ALA THR MET ILE ASP TRP ARG PRO VAL VAL SEQRES 14 A 440 HIS GLU MET ARG LEU PHE LYS SER PRO GLU GLU ILE ALA SEQRES 15 A 440 VAL LEU ARG ARG ALA GLY GLU ILE THR ALA MET ALA HIS SEQRES 16 A 440 THR ARG ALA MET GLU LYS CYS ARG PRO GLY MET PHE GLU SEQRES 17 A 440 TYR HIS LEU GLU GLY GLU ILE HIS HIS GLU PHE ASN ARG SEQRES 18 A 440 HIS GLY ALA ARG TYR PRO SER TYR ASN THR ILE VAL GLY SEQRES 19 A 440 SER GLY GLU ASN GLY CYS ILE LEU HIS TYR THR GLU ASN SEQRES 20 A 440 GLU CYS GLU MET ARG ASP GLY ASP LEU VAL LEU ILE ASP SEQRES 21 A 440 ALA GLY CYS GLU TYR LYS GLY TYR ALA GLY ASP ILE THR SEQRES 22 A 440 ARG THR PHE PRO VAL ASN GLY LYS PHE THR GLN ALA GLN SEQRES 23 A 440 ARG GLU ILE TYR ASP ILE VAL LEU GLU SER LEU GLU THR SEQRES 24 A 440 SER LEU ARG LEU TYR ARG PRO GLY THR SER ILE LEU GLU SEQRES 25 A 440 VAL THR GLY GLU VAL VAL ARG ILE MET VAL SER GLY LEU SEQRES 26 A 440 VAL LYS LEU GLY ILE LEU LYS GLY ASP VAL ASP GLU LEU SEQRES 27 A 440 ILE ALA GLN ASN ALA HIS ARG PRO PHE PHE MET HIS GLY SEQRES 28 A 440 LEU SER HIS TRP LEU GLY LEU ASP VAL HIS ASP VAL GLY SEQRES 29 A 440 VAL TYR GLY GLN ASP ARG SER ARG ILE LEU GLU PRO GLY SEQRES 30 A 440 MET VAL LEU THR VAL GLU PRO GLY LEU TYR ILE ALA PRO SEQRES 31 A 440 ASP ALA GLU VAL PRO GLU GLN TYR ARG GLY ILE GLY ILE SEQRES 32 A 440 ARG ILE GLU ASP ASP ILE VAL ILE THR GLU THR GLY ASN SEQRES 33 A 440 GLU ASN LEU THR ALA SER VAL VAL LYS LYS PRO GLU GLU SEQRES 34 A 440 ILE GLU ALA LEU MET VAL ALA ALA ARG LYS GLN HET MN A 441 1 HET MN A 442 1 HET ACT A 443 4 HETNAM MN MANGANESE (II) ION HETNAM ACT ACETATE ION FORMUL 2 MN 2(MN 2+) FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 HOH *262(H2 O) HELIX 1 1 ARG A 5 GLN A 18 1 14 HELIX 2 2 SER A 47 THR A 53 1 7 HELIX 3 3 LEU A 83 TRP A 88 1 6 HELIX 4 4 GLY A 94 LYS A 101 1 8 HELIX 5 5 PHE A 110 LEU A 121 5 12 HELIX 6 6 ALA A 135 LYS A 150 1 16 HELIX 7 7 ARG A 166 LEU A 174 1 9 HELIX 8 8 PRO A 178 LYS A 201 1 24 HELIX 9 9 GLU A 208 HIS A 222 1 15 HELIX 10 10 GLY A 236 CYS A 240 5 5 HELIX 11 11 GLN A 284 LEU A 303 1 20 HELIX 12 12 ILE A 310 LEU A 328 1 19 HELIX 13 13 VAL A 335 ALA A 340 1 6 HELIX 14 14 GLN A 368 ARG A 370 5 3 HELIX 15 15 GLU A 396 TYR A 398 5 3 HELIX 16 16 PRO A 427 ALA A 437 1 11 SHEET 1 A 6 THR A 161 ILE A 163 0 SHEET 2 A 6 VAL A 126 HIS A 129 1 N VAL A 127 O THR A 161 SHEET 3 A 6 SER A 23 PHE A 28 1 N ALA A 24 O VAL A 126 SHEET 4 A 6 VAL A 61 LYS A 66 -1 N LYS A 66 O SER A 23 SHEET 5 A 6 ASN A 72 ASN A 78 -1 N PHE A 77 O VAL A 61 SHEET 6 A 6 ARG A 106 ALA A 109 1 N ARG A 106 O LEU A 76 SHEET 1 B 3 ILE A 232 SER A 235 0 SHEET 2 B 3 LEU A 256 ALA A 261 -1 N ASP A 260 O ILE A 232 SHEET 3 B 3 ILE A 272 PRO A 277 -1 N PHE A 276 O VAL A 257 SHEET 1 C 3 VAL A 379 VAL A 382 0 SHEET 2 C 3 ASP A 407 ILE A 411 -1 N ILE A 409 O LEU A 380 SHEET 3 C 3 ASN A 416 ASN A 418 -1 N GLU A 417 O VAL A 410 SHEET 1 D 2 GLY A 385 ILE A 388 0 SHEET 2 D 2 ILE A 401 ARG A 404 -1 N ILE A 403 O LEU A 386 LINK OD1 ASP A 260 MN MN A 442 1555 1555 2.29 LINK OD2 ASP A 260 MN MN A 442 1555 1555 2.17 LINK OD2 ASP A 271 MN MN A 441 1555 1555 2.18 LINK OD1 ASP A 271 MN MN A 442 1555 1555 2.39 LINK NE2 HIS A 354 MN MN A 441 1555 1555 2.02 LINK OE2 GLU A 383 MN MN A 441 1555 1555 2.49 LINK OE2 GLU A 406 MN MN A 441 1555 1555 2.29 LINK OE1 GLU A 406 MN MN A 442 1555 1555 1.77 LINK MN MN A 441 O ACT A 443 1555 1555 2.18 LINK MN MN A 442 O ACT A 443 1555 1555 2.27 SITE 1 NUL 6 ASP A 260 ASP A 271 HIS A 354 GLU A 383 SITE 2 NUL 6 GLU A 406 ACT A 443 SITE 1 AC1 6 ASP A 271 HIS A 354 GLU A 383 GLU A 406 SITE 2 AC1 6 MN A 442 ACT A 443 SITE 1 AC2 6 ASP A 260 ASP A 271 THR A 273 GLU A 406 SITE 2 AC2 6 MN A 441 ACT A 443 SITE 1 AC3 9 TYR A 229 ASP A 260 ASP A 271 HIS A 354 SITE 2 AC3 9 HIS A 361 GLU A 383 GLU A 406 MN A 441 SITE 3 AC3 9 MN A 442 CRYST1 139.710 139.710 230.870 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007158 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007158 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004331 0.00000