data_1JB6 # _entry.id 1JB6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1JB6 pdb_00001jb6 10.2210/pdb1jb6/pdb RCSB RCSB013577 ? ? WWPDB D_1000013577 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1g39 ;1g39 is the structure of the wild-type dimerization domain ; unspecified PDB 1g2y ;1g2y is the structure of the variant peptide with L12 replaced by seleno-methionine ; unspecified PDB 1g2z ;1g2z is the structure of the same peptide with L13 replaced by seleno-methionine. ; unspecified PDB 1f93 ;1f93 is the structure of the wild-type dimerization domain complexed with DCoH ; unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1JB6 _pdbx_database_status.recvd_initial_deposition_date 2001-06-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Narayana, N.' 1 'Hua, Q.-X.' 2 'Weiss, M.A.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;The dimerization domain of HNF-1alpha: structure and plasticity of an intertwined four-helix bundle with application to diabetes mellitus. ; J.Mol.Biol. 310 635 658 2001 JMOBAK UK 0022-2836 0070 ? 11439029 10.1006/jmbi.2001.4780 1 ;Diabetes-Associated Mutations in a beta-Cell Transcription factor Destabilize an Antiparallel "Mini-Zipper" in a Dimerization Interface ; Proc.Natl.Acad.Sci.USA 97 1999 2004 2000 PNASA6 US 0027-8424 0040 ? ? 10.1073/pnas.97.5.1999 2 'Structural Basis of Dimerization, Coactivator Recognition and MODY3 Mutations in HNF-1alpha' Nat.Struct.Biol. 7 744 748 2000 NSBIEW US 1072-8368 2024 ? ? 10.1038/78966 3 'High-Resolution Structure of the HNF-1alpha Dimerization Domain' Biochemistry 39 15062 15070 2000 BICHAW US 0006-2960 0033 ? ? 10.1021/bi001996t 4 'HNF1, A Homeoprotein Member of the Hepatic Transcription Regulatory Network' BIO*ESSAYS 14 579 587 1992 BIOEEJ UK 0265-9247 0880 ? ? ? 5 'Maturity-onset Diabetes of the Young (MODY), MODY Genes and Non-Insulin-Dependent Diabetes mellitus' 'DIABETES METAB.' 23 34 37 1997 ? FR 1262-3636 ? ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Narayana, N.' 1 ? primary 'Hua, Q.' 2 ? primary 'Weiss, M.A.' 3 ? 1 'Hua, Q.X.' 4 ? 1 'Zhao, M.' 5 ? 1 'Narayana, N.' 6 ? 1 'Nakagawa, S.H.' 7 ? 1 'Jia, W.' 8 ? 1 'Weiss, M.A.' 9 ? 2 'Rose, R.B.' 10 ? 2 'Bayle, J.H.' 11 ? 2 'Endrizzi, J.A.' 12 ? 2 'Cronk, J.D.' 13 ? 2 'Crabtree, G.R.' 14 ? 2 'Alber, T.' 15 ? 3 'Rose, R.B.' 16 ? 3 'Endrizzi, J.A.' 17 ? 3 'Cronk, J.D.' 18 ? 3 'Holton, J.' 19 ? 3 'Alber, T.' 20 ? 4 'Tronche, F.' 21 ? 4 'Yaniv, M.' 22 ? 5 'Velho, G.' 23 ? 5 'Froguel, P.' 24 ? # _cell.entry_id 1JB6 _cell.length_a 28.42 _cell.length_b 42.19 _cell.length_c 42.43 _cell.angle_alpha 90.0 _cell.angle_beta 90.0 _cell.angle_gamma 90.0 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JB6 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'HEPATOCYTE NUCLEAR FACTOR 1-ALPHA' 3620.056 2 ? ? 'Dimerization domain (residues 1-32)' ? 2 water nat water 18.015 55 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name HNF-1A # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(NLE)VSKLSQLQTEL(MSE)AALLESGLSKEALIQALGEW' _entity_poly.pdbx_seq_one_letter_code_can LVSKLSQLQTELMAALLESGLSKEALIQALGEW _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 NLE n 1 2 VAL n 1 3 SER n 1 4 LYS n 1 5 LEU n 1 6 SER n 1 7 GLN n 1 8 LEU n 1 9 GLN n 1 10 THR n 1 11 GLU n 1 12 LEU n 1 13 MSE n 1 14 ALA n 1 15 ALA n 1 16 LEU n 1 17 LEU n 1 18 GLU n 1 19 SER n 1 20 GLY n 1 21 LEU n 1 22 SER n 1 23 LYS n 1 24 GLU n 1 25 ALA n 1 26 LEU n 1 27 ILE n 1 28 GLN n 1 29 ALA n 1 30 LEU n 1 31 GLY n 1 32 GLU n 1 33 TRP n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;This peptide was chemically synthesized. The sequence of this peptide occurs naturally in Mus musculus (mouse) as well as in Homo sapiens (humans). ; # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code HNF1A_MOUSE _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P22361 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code MVSKLSQLQTELLAALLESGLSKEALIQALGEP _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1JB6 A 1 ? 33 ? P22361 1 ? 33 ? 1 33 2 1 1JB6 B 1 ? 33 ? P22361 1 ? 33 ? 34 66 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1JB6 NLE A 1 ? UNP P22361 MET 1 'engineered mutation' 1 1 1 1JB6 MSE A 13 ? UNP P22361 LEU 13 'engineered mutation' 13 2 1 1JB6 TRP A 33 ? UNP P22361 PRO 33 'engineered mutation' 33 3 2 1JB6 NLE B 1 ? UNP P22361 MET 1 'engineered mutation' 34 4 2 1JB6 MSE B 13 ? UNP P22361 LEU 13 'engineered mutation' 46 5 2 1JB6 TRP B 33 ? UNP P22361 PRO 33 'engineered mutation' 66 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NLE 'L-peptide linking' n NORLEUCINE ? 'C6 H13 N O2' 131.173 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1JB6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.6 _exptl_crystal.density_percent_sol 23 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'MPD, Tris-HCl, DTT, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type SBC-2 _diffrn_detector.pdbx_collection_date 2000-03-24 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double Crystal Silicon' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9794 1.0 2 0.9800 1.0 3 1.0030 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9794, 0.9800, 1.0030' # _reflns.entry_id 1JB6 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 3.0 _reflns.d_resolution_low 40.0 _reflns.d_resolution_high 1.7 _reflns.number_obs 5245 _reflns.number_all 5922 _reflns.percent_possible_obs 88.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.0370000 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.7 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.0240000 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 5.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 584 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1JB6 _refine.ls_number_reflns_obs 5245 _refine.ls_number_reflns_all 5922 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 40.0 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 88.0 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2310000 _refine.ls_R_factor_R_free 0.2450000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 296 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 457 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 55 _refine_hist.number_atoms_total 512 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 40.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.004 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 0.80 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 1.70 _refine_ls_shell.d_res_low 1.78 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.2200000 _refine_ls_shell.percent_reflns_obs 77.0 _refine_ls_shell.R_factor_R_free 0.2620000 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 28 _refine_ls_shell.number_reflns_obs 447 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1JB6 _struct.title 'Crystal Structure of Dimerization Domain (1-33) of HNF-1alpha' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1JB6 _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'Four-helix bundle, non-canonical turn, TRANSCRIPTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # loop_ _struct_biol.id _struct_biol.details _struct_biol.pdbx_parent_biol_id 1 ;There are two independent molecules in the asymmetric unit. For each molecule, a crystallographic 2-fold axis generates the biological dimer. ; ? 2 ? ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 3 ? SER A 19 ? SER A 3 SER A 19 1 ? 17 HELX_P HELX_P2 2 SER A 22 ? GLY A 31 ? SER A 22 GLY A 31 1 ? 10 HELX_P HELX_P3 3 SER B 3 ? SER B 19 ? SER B 36 SER B 52 1 ? 17 HELX_P HELX_P4 4 SER B 22 ? LEU B 30 ? SER B 55 LEU B 63 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A NLE 1 C ? ? ? 1_555 A VAL 2 N ? ? A NLE 1 A VAL 2 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? A LEU 12 C ? ? ? 1_555 A MSE 13 N ? ? A LEU 12 A MSE 13 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale3 covale both ? A MSE 13 C ? ? ? 1_555 A ALA 14 N ? ? A MSE 13 A ALA 14 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale4 covale both ? B LEU 12 C ? ? ? 1_555 B MSE 13 N ? ? B LEU 45 B MSE 46 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale5 covale both ? B MSE 13 C ? ? ? 1_555 B ALA 14 N ? ? B MSE 46 B ALA 47 1_555 ? ? ? ? ? ? ? 1.329 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1JB6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1JB6 _atom_sites.fract_transf_matrix[1][1] 0.035186 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023702 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023568 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 NLE 1 1 1 NLE NLE A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLN 7 7 7 GLN GLN A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 GLN 9 9 9 GLN GLN A . n A 1 10 THR 10 10 10 THR THR A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 MSE 13 13 13 MSE MSE A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 GLN 28 28 28 GLN GLN A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 TRP 33 33 33 TRP TRP A . n B 1 1 NLE 1 34 ? ? ? B . n B 1 2 VAL 2 35 ? ? ? B . n B 1 3 SER 3 36 36 SER SER B . n B 1 4 LYS 4 37 37 LYS LYS B . n B 1 5 LEU 5 38 38 LEU LEU B . n B 1 6 SER 6 39 39 SER SER B . n B 1 7 GLN 7 40 40 GLN GLN B . n B 1 8 LEU 8 41 41 LEU LEU B . n B 1 9 GLN 9 42 42 GLN GLN B . n B 1 10 THR 10 43 43 THR THR B . n B 1 11 GLU 11 44 44 GLU GLU B . n B 1 12 LEU 12 45 45 LEU LEU B . n B 1 13 MSE 13 46 46 MSE MSE B . n B 1 14 ALA 14 47 47 ALA ALA B . n B 1 15 ALA 15 48 48 ALA ALA B . n B 1 16 LEU 16 49 49 LEU LEU B . n B 1 17 LEU 17 50 50 LEU LEU B . n B 1 18 GLU 18 51 51 GLU GLU B . n B 1 19 SER 19 52 52 SER SER B . n B 1 20 GLY 20 53 53 GLY GLY B . n B 1 21 LEU 21 54 54 LEU LEU B . n B 1 22 SER 22 55 55 SER SER B . n B 1 23 LYS 23 56 56 LYS LYS B . n B 1 24 GLU 24 57 57 GLU GLU B . n B 1 25 ALA 25 58 58 ALA ALA B . n B 1 26 LEU 26 59 59 LEU LEU B . n B 1 27 ILE 27 60 60 ILE ILE B . n B 1 28 GLN 28 61 61 GLN GLN B . n B 1 29 ALA 29 62 62 ALA ALA B . n B 1 30 LEU 30 63 63 LEU LEU B . n B 1 31 GLY 31 64 ? ? ? B . n B 1 32 GLU 32 65 ? ? ? B . n B 1 33 TRP 33 66 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 68 68 HOH WAT A . C 2 HOH 2 69 69 HOH WAT A . C 2 HOH 3 71 71 HOH WAT A . C 2 HOH 4 74 74 HOH WAT A . C 2 HOH 5 75 75 HOH WAT A . C 2 HOH 6 79 79 HOH WAT A . C 2 HOH 7 80 80 HOH WAT A . C 2 HOH 8 81 81 HOH WAT A . C 2 HOH 9 82 82 HOH WAT A . C 2 HOH 10 83 83 HOH WAT A . C 2 HOH 11 84 84 HOH WAT A . C 2 HOH 12 85 85 HOH WAT A . C 2 HOH 13 86 86 HOH WAT A . C 2 HOH 14 87 87 HOH WAT A . C 2 HOH 15 89 89 HOH WAT A . C 2 HOH 16 90 90 HOH WAT A . C 2 HOH 17 94 94 HOH WAT A . C 2 HOH 18 96 96 HOH WAT A . C 2 HOH 19 97 97 HOH WAT A . C 2 HOH 20 98 98 HOH WAT A . C 2 HOH 21 99 99 HOH WAT A . C 2 HOH 22 101 101 HOH WAT A . C 2 HOH 23 103 103 HOH WAT A . C 2 HOH 24 104 104 HOH WAT A . C 2 HOH 25 105 105 HOH WAT A . C 2 HOH 26 106 106 HOH WAT A . C 2 HOH 27 107 107 HOH WAT A . C 2 HOH 28 108 108 HOH WAT A . C 2 HOH 29 110 110 HOH WAT A . C 2 HOH 30 112 112 HOH WAT A . C 2 HOH 31 113 113 HOH WAT A . C 2 HOH 32 114 114 HOH WAT A . C 2 HOH 33 120 120 HOH WAT A . C 2 HOH 34 121 121 HOH WAT A . D 2 HOH 1 67 67 HOH WAT B . D 2 HOH 2 70 70 HOH WAT B . D 2 HOH 3 72 72 HOH WAT B . D 2 HOH 4 73 73 HOH WAT B . D 2 HOH 5 76 76 HOH WAT B . D 2 HOH 6 77 77 HOH WAT B . D 2 HOH 7 78 78 HOH WAT B . D 2 HOH 8 88 88 HOH WAT B . D 2 HOH 9 91 91 HOH WAT B . D 2 HOH 10 92 92 HOH WAT B . D 2 HOH 11 93 93 HOH WAT B . D 2 HOH 12 95 95 HOH WAT B . D 2 HOH 13 100 100 HOH WAT B . D 2 HOH 14 102 102 HOH WAT B . D 2 HOH 15 109 109 HOH WAT B . D 2 HOH 16 111 111 HOH WAT B . D 2 HOH 17 115 115 HOH WAT B . D 2 HOH 18 116 116 HOH WAT B . D 2 HOH 19 117 117 HOH WAT B . D 2 HOH 20 118 118 HOH WAT B . D 2 HOH 21 119 119 HOH WAT B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A NLE 1 A NLE 1 ? LEU NORLEUCINE 2 A MSE 13 A MSE 13 ? MET SELENOMETHIONINE 3 B MSE 13 B MSE 46 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 3 software_defined_assembly PISA tetrameric 4 4 software_defined_assembly PQS octameric 8 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,C 2 1,2 B,D 3 1,2 A,B,C,D 4 1,3,2,4 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1580 ? 1 MORE -18 ? 1 'SSA (A^2)' 5090 ? 2 'ABSA (A^2)' 1280 ? 2 MORE -15 ? 2 'SSA (A^2)' 4210 ? 3 'ABSA (A^2)' 4050 ? 3 MORE -44 ? 3 'SSA (A^2)' 8110 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_554 x,y,z-1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 -42.4300000000 4 'crystal symmetry operation' 2_554 -x,-y,z-1 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 -42.4300000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-07-11 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 5 'Structure model' 1 4 2021-10-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' struct_conn 4 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 5 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement . ? 1 d*TREK 'data reduction' '(D*TREK)' ? 2 HKL-2000 'data scaling' . ? 3 CNS phasing . ? 4 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 110 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 110 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_655 _pdbx_validate_symm_contact.dist 1.96 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B NLE 34 ? B NLE 1 2 1 Y 1 B VAL 35 ? B VAL 2 3 1 Y 1 B GLY 64 ? B GLY 31 4 1 Y 1 B GLU 65 ? B GLU 32 5 1 Y 1 B TRP 66 ? B TRP 33 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #