HEADER LIPID BINDING PROTEIN 04-JUN-01 1JBH TITLE SOLUTION STRUCTURE OF CELLULAR RETINOL BINDING PROTEIN TYPE-I IN THE TITLE 2 LIGAND-FREE STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULAR RETINOL-BINDING PROTEIN TYPE I; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CRBP-I; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: RBP-1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11B KEYWDS BETA BARREL, RETINOID CARRIER, APO FORM, NMR SPECTROSCOPY, 15N KEYWDS 2 ISOTOPE ENRICHMENT, LIPID BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.FRANZONI,C.LUECKE,C.PEREZ,D.CAVAZZINI,M.RADEMACHER,C.LUDWIG, AUTHOR 2 A.SPISNI,G.L.ROSSI,H.RUETERJANS REVDAT 5 22-MAY-24 1JBH 1 REMARK REVDAT 4 23-FEB-22 1JBH 1 REMARK REVDAT 3 24-FEB-09 1JBH 1 VERSN REVDAT 2 01-APR-03 1JBH 1 JRNL REVDAT 1 19-JUN-02 1JBH 0 JRNL AUTH L.FRANZONI,C.LUCKE,C.PEREZ,D.CAVAZZINI,M.RADEMACHER, JRNL AUTH 2 C.LUDWIG,A.SPISNI,G.L.ROSSI,H.RUTERJANS JRNL TITL STRUCTURE AND BACKBONE DYNAMICS OF APO- AND HOLO-CELLULAR JRNL TITL 2 RETINOL-BINDING PROTEIN IN SOLUTION. JRNL REF J.BIOL.CHEM. V. 277 21983 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 11934897 JRNL DOI 10.1074/JBC.M201994200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.W.COWAN,M.E.NEWCOMER,T.A.JONES REMARK 1 TITL CRYSTALLOGRAPHIC STUDIES ON A FAMILY OF CELLULAR LIPOPHILIC REMARK 1 TITL 2 TRANSPORT PROTEINS REMARK 1 REF J.MOL.BIOL. V. 230 1225 1993 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1993.1238 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DISCOVER 97 REMARK 3 AUTHORS : MSI REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 2409 NOE-DERIVED DISTANCE RESTRAINTS REMARK 4 REMARK 4 1JBH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUN-01. REMARK 100 THE DEPOSITION ID IS D_1000013586. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.00 REMARK 210 PH : 6.00 REMARK 210 IONIC STRENGTH : 20MM POTASSIUM PHOSPHATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.6MM CRBP-I PHOSPHATE BUFFER; REMARK 210 0.05% SODIUM AZIDE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D_TOCSY; 2D_NOESY; 2D_15N-HSQC; REMARK 210 2D_15N-HTQC; 3D_15N-TOCSY-HSQC; REMARK 210 3D_15N-NOESY-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 1.3, AURELIA 2.5.9, REMARK 210 FELIX 97, NMR2ST 2.05, DYANA 1.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS COMBINED REMARK 210 WITH SIMULATED ANNEALING REMARK 210 FOLLOWED BY ENERGY MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 GLU A 14 CD GLU A 14 OE2 0.108 REMARK 500 1 GLU A 17 CD GLU A 17 OE2 0.113 REMARK 500 1 GLU A 18 CD GLU A 18 OE2 0.109 REMARK 500 1 GLU A 41 CD GLU A 41 OE2 0.113 REMARK 500 1 HIS A 48 CG HIS A 48 CD2 0.059 REMARK 500 1 GLU A 69 CD GLU A 69 OE2 0.117 REMARK 500 1 GLU A 71 CD GLU A 71 OE2 0.114 REMARK 500 1 GLU A 72 CD GLU A 72 OE2 0.108 REMARK 500 1 GLU A 100 CD GLU A 100 OE2 0.115 REMARK 500 1 GLU A 102 CD GLU A 102 OE2 0.110 REMARK 500 1 GLU A 111 CD GLU A 111 OE2 0.111 REMARK 500 1 GLU A 114 CD GLU A 114 OE2 0.118 REMARK 500 1 GLU A 118 CD GLU A 118 OE2 0.114 REMARK 500 1 GLU A 122 CD GLU A 122 OE2 0.113 REMARK 500 2 GLU A 14 CD GLU A 14 OE2 0.110 REMARK 500 2 GLU A 17 CD GLU A 17 OE2 0.113 REMARK 500 2 GLU A 18 CD GLU A 18 OE2 0.111 REMARK 500 2 GLU A 41 CD GLU A 41 OE2 0.114 REMARK 500 2 HIS A 48 CG HIS A 48 CD2 0.059 REMARK 500 2 GLU A 69 CD GLU A 69 OE2 0.112 REMARK 500 2 GLU A 71 CD GLU A 71 OE2 0.116 REMARK 500 2 GLU A 72 CD GLU A 72 OE2 0.111 REMARK 500 2 GLU A 100 CD GLU A 100 OE2 0.110 REMARK 500 2 GLU A 102 CD GLU A 102 OE2 0.110 REMARK 500 2 GLU A 111 CD GLU A 111 OE2 0.109 REMARK 500 2 GLU A 114 CD GLU A 114 OE2 0.108 REMARK 500 2 GLU A 118 CD GLU A 118 OE2 0.114 REMARK 500 2 GLU A 122 CD GLU A 122 OE2 0.111 REMARK 500 3 GLU A 14 CD GLU A 14 OE2 0.110 REMARK 500 3 GLU A 17 CD GLU A 17 OE2 0.115 REMARK 500 3 GLU A 18 CD GLU A 18 OE2 0.116 REMARK 500 3 GLU A 41 CD GLU A 41 OE2 0.109 REMARK 500 3 HIS A 48 CG HIS A 48 CD2 0.061 REMARK 500 3 GLU A 69 CD GLU A 69 OE2 0.109 REMARK 500 3 GLU A 71 CD GLU A 71 OE2 0.114 REMARK 500 3 GLU A 72 CD GLU A 72 OE2 0.109 REMARK 500 3 GLU A 100 CD GLU A 100 OE2 0.113 REMARK 500 3 GLU A 102 CD GLU A 102 OE2 0.110 REMARK 500 3 GLU A 111 CD GLU A 111 OE2 0.118 REMARK 500 3 GLU A 114 CD GLU A 114 OE2 0.112 REMARK 500 3 GLU A 118 CD GLU A 118 OE2 0.113 REMARK 500 3 GLU A 122 CD GLU A 122 OE2 0.109 REMARK 500 4 GLU A 14 CD GLU A 14 OE2 0.113 REMARK 500 4 GLU A 17 CD GLU A 17 OE2 0.110 REMARK 500 4 GLU A 18 CD GLU A 18 OE2 0.111 REMARK 500 4 GLU A 41 CD GLU A 41 OE2 0.110 REMARK 500 4 HIS A 48 CG HIS A 48 CD2 0.061 REMARK 500 4 GLU A 69 CD GLU A 69 OE2 0.110 REMARK 500 4 GLU A 71 CD GLU A 71 OE2 0.114 REMARK 500 4 GLU A 72 CD GLU A 72 OE2 0.113 REMARK 500 REMARK 500 THIS ENTRY HAS 282 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ASP A 3 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 1 ASP A 3 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 1 ARG A 21 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 1 ASP A 24 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 1 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 1 ASP A 39 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 1 ASP A 39 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 1 ASP A 45 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 1 ASP A 47 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 1 ASP A 47 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 1 HIS A 48 ND1 - CE1 - NE2 ANGL. DEV. = 8.7 DEGREES REMARK 500 1 ARG A 52 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 1 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 1 ASP A 63 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 1 ASP A 73 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 1 ASP A 73 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 1 ASP A 78 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 1 ASP A 78 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 1 ASP A 79 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 1 ASP A 79 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 1 ARG A 80 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 1 ARG A 80 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 1 ASP A 89 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 1 ARG A 104 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 1 ASP A 113 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 1 ASP A 113 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 1 HIS A 116 ND1 - CE1 - NE2 ANGL. DEV. = 8.5 DEGREES REMARK 500 1 ARG A 120 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 1 HIS A 134 ND1 - CE1 - NE2 ANGL. DEV. = 8.5 DEGREES REMARK 500 2 ASP A 3 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 2 ARG A 21 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 2 ASP A 24 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 2 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 2 ASP A 39 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 2 ASP A 39 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 2 ASP A 45 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 2 ASP A 47 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 2 ASP A 47 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 2 HIS A 48 ND1 - CE1 - NE2 ANGL. DEV. = 8.6 DEGREES REMARK 500 2 ARG A 52 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 2 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 2 ASP A 73 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 2 ASP A 73 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 2 ASP A 79 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 2 ARG A 80 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 2 ASP A 89 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 2 ASP A 89 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 2 ASP A 91 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 2 ARG A 104 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 2 ASP A 113 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 520 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 5 109.51 -51.84 REMARK 500 1 GLU A 14 -70.23 -77.18 REMARK 500 1 LYS A 37 78.99 -112.54 REMARK 500 1 ILE A 61 97.64 74.50 REMARK 500 2 ALA A 33 -51.95 -172.79 REMARK 500 2 THR A 56 49.22 -77.64 REMARK 500 2 PHE A 57 -66.43 -172.53 REMARK 500 2 ASP A 73 -123.60 69.49 REMARK 500 2 ILE A 77 -75.00 -83.55 REMARK 500 2 ASP A 79 73.09 64.58 REMARK 500 3 LEU A 11 -60.16 -90.97 REMARK 500 3 LYS A 37 65.54 64.76 REMARK 500 3 ASP A 45 69.31 -113.94 REMARK 500 3 PHE A 57 -67.04 -173.20 REMARK 500 3 ARG A 80 52.01 -108.11 REMARK 500 3 LYS A 81 81.60 61.88 REMARK 500 3 GLN A 97 75.02 -101.95 REMARK 500 3 GLU A 122 -0.32 64.80 REMARK 500 4 ALA A 33 -53.59 -176.03 REMARK 500 4 PHE A 57 -67.93 -168.99 REMARK 500 4 ILE A 77 -71.57 70.04 REMARK 500 4 MET A 83 96.16 -68.63 REMARK 500 4 ASP A 89 65.79 -103.77 REMARK 500 4 GLU A 100 -58.76 -125.18 REMARK 500 4 GLU A 122 -76.19 69.58 REMARK 500 5 ALA A 33 -47.29 -179.45 REMARK 500 5 ASP A 47 -33.80 65.26 REMARK 500 5 PHE A 57 -68.64 -167.26 REMARK 500 5 ASP A 79 66.11 63.34 REMARK 500 5 ASP A 89 65.70 -108.58 REMARK 500 5 GLN A 97 75.98 -103.93 REMARK 500 6 ASP A 45 70.58 -100.33 REMARK 500 6 PHE A 57 -68.61 -174.06 REMARK 500 6 LEU A 74 74.98 57.16 REMARK 500 6 ASP A 78 68.74 -67.04 REMARK 500 7 ASP A 47 -10.79 59.97 REMARK 500 7 SER A 55 -3.13 -153.47 REMARK 500 7 THR A 56 -62.97 75.40 REMARK 500 7 ASP A 73 -159.75 -119.27 REMARK 500 7 THR A 75 -1.70 55.58 REMARK 500 7 ASP A 79 -101.88 -99.07 REMARK 500 7 ARG A 80 -124.43 -140.83 REMARK 500 8 ASP A 3 99.41 -67.92 REMARK 500 8 ASP A 45 64.59 -116.20 REMARK 500 8 ARG A 58 -117.15 -151.08 REMARK 500 8 ILE A 61 92.70 62.02 REMARK 500 8 ILE A 77 -87.58 68.79 REMARK 500 9 PRO A 1 -137.97 -80.72 REMARK 500 9 ASP A 47 -34.56 76.71 REMARK 500 9 PHE A 57 -67.82 -168.81 REMARK 500 REMARK 500 THIS ENTRY HAS 143 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 72 ASP A 73 10 -139.71 REMARK 500 PHE A 70 GLU A 71 13 132.91 REMARK 500 GLY A 90 ASP A 91 13 148.32 REMARK 500 GLY A 76 ILE A 77 14 140.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 TYR A 60 0.08 SIDE CHAIN REMARK 500 7 TYR A 60 0.06 SIDE CHAIN REMARK 500 13 PHE A 70 0.09 SIDE CHAIN REMARK 500 16 TYR A 60 0.07 SIDE CHAIN REMARK 500 17 ARG A 104 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KGL RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF CELLULAR RETINOL BINDING PROTEIN TYPE-I IN REMARK 900 COMPLEX WITH ALL-TRANS-RETINOL REMARK 900 RELATED ID: 1CRB RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE CELLULAR RETINOL BINDING PROTEIN TYPE-I IN REMARK 900 COMPLEX WITH ALL-TRANS-RETINOL DBREF 1JBH A 0 134 UNP P02696 RET1_RAT 0 134 SEQRES 1 A 135 MET PRO VAL ASP PHE ASN GLY TYR TRP LYS MET LEU SER SEQRES 2 A 135 ASN GLU ASN PHE GLU GLU TYR LEU ARG ALA LEU ASP VAL SEQRES 3 A 135 ASN VAL ALA LEU ARG LYS ILE ALA ASN LEU LEU LYS PRO SEQRES 4 A 135 ASP LYS GLU ILE VAL GLN ASP GLY ASP HIS MET ILE ILE SEQRES 5 A 135 ARG THR LEU SER THR PHE ARG ASN TYR ILE MET ASP PHE SEQRES 6 A 135 GLN VAL GLY LYS GLU PHE GLU GLU ASP LEU THR GLY ILE SEQRES 7 A 135 ASP ASP ARG LYS CYS MET THR THR VAL SER TRP ASP GLY SEQRES 8 A 135 ASP LYS LEU GLN CYS VAL GLN LYS GLY GLU LYS GLU GLY SEQRES 9 A 135 ARG GLY TRP THR GLN TRP ILE GLU GLY ASP GLU LEU HIS SEQRES 10 A 135 LEU GLU MET ARG ALA GLU GLY VAL THR CYS LYS GLN VAL SEQRES 11 A 135 PHE LYS LYS VAL HIS HELIX 1 1 PHE A 16 LEU A 23 1 8 HELIX 2 2 VAL A 27 LEU A 35 1 9 SHEET 1 A10 ASN A 59 GLN A 65 0 SHEET 2 A10 HIS A 48 LEU A 54 -1 N MET A 49 O PHE A 64 SHEET 3 A10 ASP A 39 ASP A 45 -1 O ASP A 39 N LEU A 54 SHEET 4 A10 GLY A 6 GLU A 14 -1 O GLY A 6 N ILE A 42 SHEET 5 A10 VAL A 124 LYS A 132 -1 O VAL A 129 N LEU A 11 SHEET 6 A10 GLU A 114 ALA A 121 -1 O LEU A 115 N PHE A 130 SHEET 7 A10 ARG A 104 GLU A 111 -1 N GLY A 105 O ARG A 120 SHEET 8 A10 LYS A 92 LYS A 98 -1 N LEU A 93 O GLN A 108 SHEET 9 A10 CYS A 82 ASP A 89 -1 N MET A 83 O LYS A 98 SHEET 10 A10 LYS A 68 GLU A 71 -1 O PHE A 70 N THR A 84 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1