data_1JBT # _entry.id 1JBT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1JBT pdb_00001jbt 10.2210/pdb1jbt/pdb NDB PR0053 ? ? RCSB RCSB013598 ? ? WWPDB D_1000013598 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-10-26 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-16 5 'Structure model' 1 4 2024-11-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site 8 5 'Structure model' pdbx_entry_details 9 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.value' 16 4 'Structure model' '_struct_conn.pdbx_dist_value' 17 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 29 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 30 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 31 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1JBT _pdbx_database_status.recvd_initial_deposition_date 2001-06-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1AQZ 'Crystal Structure Of A Highly Specific Aspergillus Ribotoxin, Restrictocin' unspecified PDB 430D 'Crystal Structure Of The Sarcin/Ricin Domain From E. Coli 23 S Rrna' unspecified PDB 480D 'Crystal Structure Of The Sarcin/Ricin Domain From E. Coli 23 S Rrna' unspecified PDB 483D 'Crystal Structure Of The Sarcin/Ricin Domain From E. Coli 23 S Rrna' unspecified PDB 1JBR 'Crystal Structure of the Ribotoxin Restrictocin and a 31-mer SRD RNA Inhibitor' unspecified PDB 1JBS 'Crystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analog' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yang, X.' 1 'Gerczei, T.' 2 'Glover, L.' 3 'Correll, C.C.' 4 # _citation.id primary _citation.title 'Crystal structures of restrictocin-inhibitor complexes with implications for RNA recognition and base flipping.' _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 8 _citation.page_first 968 _citation.page_last 973 _citation.year 2001 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11685244 _citation.pdbx_database_id_DOI 10.1038/nsb1101-968 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yang, X.' 1 ? primary 'Gerczei, T.' 2 ? primary 'Glover, L.T.' 3 ? primary 'Correll, C.C.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn '29-MER SARCIN/RICIN DOMAIN RNA ANALOG' 9376.675 2 ? ? ? ? 2 polymer nat RESTRICTOCIN 16889.877 2 3.1.27.- ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 6 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'RIBONUCLEASE MITOGILLIN' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no CGCUCCUCAGUACGAGAGGAACCGGAGCG CGCUCCUCAGUACGAGAGGAACCGGAGCG C,D ? 2 'polypeptide(L)' no no ;ATWTCINQQLNPKTNKWEDKRLLYSQAKAESNSHHAPLSDGKTGSSYPHWFTNGYDGNGKLIKGRTPIKFGKADCDRPPK HSQNGMGKDDHYLLEFPTFPDGHDYKFDSKKPKEDPGPARVIYTYPNKVFCGIVAHQRGNQGDLRLCSH ; ;ATWTCINQQLNPKTNKWEDKRLLYSQAKAESNSHHAPLSDGKTGSSYPHWFTNGYDGNGKLIKGRTPIKFGKADCDRPPK HSQNGMGKDDHYLLEFPTFPDGHDYKFDSKKPKEDPGPARVIYTYPNKVFCGIVAHQRGNQGDLRLCSH ; A,B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 'POTASSIUM ION' _pdbx_entity_nonpoly.comp_id K # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 G n 1 3 C n 1 4 U n 1 5 C n 1 6 C n 1 7 U n 1 8 C n 1 9 A n 1 10 G n 1 11 U n 1 12 A n 1 13 C n 1 14 G n 1 15 A n 1 16 G n 1 17 A n 1 18 G n 1 19 G n 1 20 A n 1 21 A n 1 22 C n 1 23 C n 1 24 G n 1 25 G n 1 26 A n 1 27 G n 1 28 C n 1 29 G n 2 1 ALA n 2 2 THR n 2 3 TRP n 2 4 THR n 2 5 CYS n 2 6 ILE n 2 7 ASN n 2 8 GLN n 2 9 GLN n 2 10 LEU n 2 11 ASN n 2 12 PRO n 2 13 LYS n 2 14 THR n 2 15 ASN n 2 16 LYS n 2 17 TRP n 2 18 GLU n 2 19 ASP n 2 20 LYS n 2 21 ARG n 2 22 LEU n 2 23 LEU n 2 24 TYR n 2 25 SER n 2 26 GLN n 2 27 ALA n 2 28 LYS n 2 29 ALA n 2 30 GLU n 2 31 SER n 2 32 ASN n 2 33 SER n 2 34 HIS n 2 35 HIS n 2 36 ALA n 2 37 PRO n 2 38 LEU n 2 39 SER n 2 40 ASP n 2 41 GLY n 2 42 LYS n 2 43 THR n 2 44 GLY n 2 45 SER n 2 46 SER n 2 47 TYR n 2 48 PRO n 2 49 HIS n 2 50 TRP n 2 51 PHE n 2 52 THR n 2 53 ASN n 2 54 GLY n 2 55 TYR n 2 56 ASP n 2 57 GLY n 2 58 ASN n 2 59 GLY n 2 60 LYS n 2 61 LEU n 2 62 ILE n 2 63 LYS n 2 64 GLY n 2 65 ARG n 2 66 THR n 2 67 PRO n 2 68 ILE n 2 69 LYS n 2 70 PHE n 2 71 GLY n 2 72 LYS n 2 73 ALA n 2 74 ASP n 2 75 CYS n 2 76 ASP n 2 77 ARG n 2 78 PRO n 2 79 PRO n 2 80 LYS n 2 81 HIS n 2 82 SER n 2 83 GLN n 2 84 ASN n 2 85 GLY n 2 86 MET n 2 87 GLY n 2 88 LYS n 2 89 ASP n 2 90 ASP n 2 91 HIS n 2 92 TYR n 2 93 LEU n 2 94 LEU n 2 95 GLU n 2 96 PHE n 2 97 PRO n 2 98 THR n 2 99 PHE n 2 100 PRO n 2 101 ASP n 2 102 GLY n 2 103 HIS n 2 104 ASP n 2 105 TYR n 2 106 LYS n 2 107 PHE n 2 108 ASP n 2 109 SER n 2 110 LYS n 2 111 LYS n 2 112 PRO n 2 113 LYS n 2 114 GLU n 2 115 ASP n 2 116 PRO n 2 117 GLY n 2 118 PRO n 2 119 ALA n 2 120 ARG n 2 121 VAL n 2 122 ILE n 2 123 TYR n 2 124 THR n 2 125 TYR n 2 126 PRO n 2 127 ASN n 2 128 LYS n 2 129 VAL n 2 130 PHE n 2 131 CYS n 2 132 GLY n 2 133 ILE n 2 134 VAL n 2 135 ALA n 2 136 HIS n 2 137 GLN n 2 138 ARG n 2 139 GLY n 2 140 ASN n 2 141 GLN n 2 142 GLY n 2 143 ASP n 2 144 LEU n 2 145 ARG n 2 146 LEU n 2 147 CYS n 2 148 SER n 2 149 HIS n # _entity_src_nat.entity_id 2 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Aspergillus restrictus' _entity_src_nat.pdbx_ncbi_taxonomy_id 5064 _entity_src_nat.genus Aspergillus _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'The RNA sequence contains 14 highly conserved nucleotides among all living species.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C C . n A 1 2 G 2 2 2 G G C . n A 1 3 C 3 3 3 C C C . n A 1 4 U 4 4 4 U U C . n A 1 5 C 5 5 5 C C C . n A 1 6 C 6 6 6 C C C . n A 1 7 U 7 7 7 U U C . n A 1 8 C 8 8 8 C C C . n A 1 9 A 9 9 9 A A C . n A 1 10 G 10 10 10 G G C . n A 1 11 U 11 11 11 U U C . n A 1 12 A 12 12 12 A A C . n A 1 13 C 13 13 13 C C C . n A 1 14 G 14 14 14 G G C . n A 1 15 A 15 15 15 A A C . n A 1 16 G 16 16 16 G G C . n A 1 17 A 17 17 17 A A C . n A 1 18 G 18 18 18 G G C . n A 1 19 G 19 19 19 G G C . n A 1 20 A 20 20 20 A A C . n A 1 21 A 21 21 21 A A C . n A 1 22 C 22 22 22 C C C . n A 1 23 C 23 23 23 C C C . n A 1 24 G 24 24 24 G G C . n A 1 25 G 25 25 25 G G C . n A 1 26 A 26 26 26 A A C . n A 1 27 G 27 27 27 G G C . n A 1 28 C 28 28 28 C C C . n A 1 29 G 29 29 29 G G C . n B 1 1 C 1 1 1 C C D . n B 1 2 G 2 2 2 G G D . n B 1 3 C 3 3 3 C C D . n B 1 4 U 4 4 4 U U D . n B 1 5 C 5 5 5 C C D . n B 1 6 C 6 6 6 C C D . n B 1 7 U 7 7 7 U U D . n B 1 8 C 8 8 8 C C D . n B 1 9 A 9 9 9 A A D . n B 1 10 G 10 10 10 G G D . n B 1 11 U 11 11 11 U U D . n B 1 12 A 12 12 12 A A D . n B 1 13 C 13 13 13 C C D . n B 1 14 G 14 14 14 G G D . n B 1 15 A 15 15 15 A A D . n B 1 16 G 16 16 16 G G D . n B 1 17 A 17 17 17 A A D . n B 1 18 G 18 18 18 G G D . n B 1 19 G 19 19 19 G G D . n B 1 20 A 20 20 20 A A D . n B 1 21 A 21 21 21 A A D . n B 1 22 C 22 22 22 C C D . n B 1 23 C 23 23 23 C C D . n B 1 24 G 24 24 24 G G D . n B 1 25 G 25 25 25 G G D . n B 1 26 A 26 26 26 A A D . n B 1 27 G 27 27 27 G G D . n B 1 28 C 28 28 28 C C D . n B 1 29 G 29 29 29 G G D . n C 2 1 ALA 1 1 1 ALA ALA A . n C 2 2 THR 2 2 2 THR THR A . n C 2 3 TRP 3 3 3 TRP TRP A . n C 2 4 THR 4 4 4 THR THR A . n C 2 5 CYS 5 5 5 CYS CYS A . n C 2 6 ILE 6 6 6 ILE ILE A . n C 2 7 ASN 7 7 7 ASN ASN A . n C 2 8 GLN 8 8 8 GLN GLN A . n C 2 9 GLN 9 9 9 GLN GLN A . n C 2 10 LEU 10 10 10 LEU LEU A . n C 2 11 ASN 11 11 11 ASN ASN A . n C 2 12 PRO 12 12 12 PRO PRO A . n C 2 13 LYS 13 13 13 LYS LYS A . n C 2 14 THR 14 14 14 THR THR A . n C 2 15 ASN 15 15 15 ASN ASN A . n C 2 16 LYS 16 16 16 LYS LYS A . n C 2 17 TRP 17 17 17 TRP TRP A . n C 2 18 GLU 18 18 18 GLU GLU A . n C 2 19 ASP 19 19 19 ASP ASP A . n C 2 20 LYS 20 20 20 LYS LYS A . n C 2 21 ARG 21 21 21 ARG ARG A . n C 2 22 LEU 22 22 22 LEU LEU A . n C 2 23 LEU 23 23 23 LEU LEU A . n C 2 24 TYR 24 24 24 TYR TYR A . n C 2 25 SER 25 25 25 SER SER A . n C 2 26 GLN 26 26 26 GLN GLN A . n C 2 27 ALA 27 27 27 ALA ALA A . n C 2 28 LYS 28 28 28 LYS LYS A . n C 2 29 ALA 29 29 29 ALA ALA A . n C 2 30 GLU 30 30 30 GLU GLU A . n C 2 31 SER 31 31 31 SER SER A . n C 2 32 ASN 32 32 32 ASN ASN A . n C 2 33 SER 33 33 33 SER SER A . n C 2 34 HIS 34 34 34 HIS HIS A . n C 2 35 HIS 35 35 35 HIS HIS A . n C 2 36 ALA 36 36 36 ALA ALA A . n C 2 37 PRO 37 37 37 PRO PRO A . n C 2 38 LEU 38 38 38 LEU LEU A . n C 2 39 SER 39 39 39 SER SER A . n C 2 40 ASP 40 40 40 ASP ASP A . n C 2 41 GLY 41 41 41 GLY GLY A . n C 2 42 LYS 42 42 42 LYS LYS A . n C 2 43 THR 43 43 43 THR THR A . n C 2 44 GLY 44 44 44 GLY GLY A . n C 2 45 SER 45 45 45 SER SER A . n C 2 46 SER 46 46 46 SER SER A . n C 2 47 TYR 47 47 47 TYR TYR A . n C 2 48 PRO 48 48 48 PRO PRO A . n C 2 49 HIS 49 49 49 HIS HIS A . n C 2 50 TRP 50 50 50 TRP TRP A . n C 2 51 PHE 51 51 51 PHE PHE A . n C 2 52 THR 52 52 52 THR THR A . n C 2 53 ASN 53 53 53 ASN ASN A . n C 2 54 GLY 54 54 54 GLY GLY A . n C 2 55 TYR 55 55 55 TYR TYR A . n C 2 56 ASP 56 56 56 ASP ASP A . n C 2 57 GLY 57 57 57 GLY GLY A . n C 2 58 ASN 58 58 58 ASN ASN A . n C 2 59 GLY 59 59 59 GLY GLY A . n C 2 60 LYS 60 60 60 LYS LYS A . n C 2 61 LEU 61 61 61 LEU LEU A . n C 2 62 ILE 62 62 62 ILE ILE A . n C 2 63 LYS 63 63 63 LYS LYS A . n C 2 64 GLY 64 64 64 GLY GLY A . n C 2 65 ARG 65 65 65 ARG ARG A . n C 2 66 THR 66 66 66 THR THR A . n C 2 67 PRO 67 67 67 PRO PRO A . n C 2 68 ILE 68 68 68 ILE ILE A . n C 2 69 LYS 69 69 69 LYS LYS A . n C 2 70 PHE 70 70 70 PHE PHE A . n C 2 71 GLY 71 71 71 GLY GLY A . n C 2 72 LYS 72 72 72 LYS LYS A . n C 2 73 ALA 73 73 73 ALA ALA A . n C 2 74 ASP 74 74 74 ASP ASP A . n C 2 75 CYS 75 75 75 CYS CYS A . n C 2 76 ASP 76 76 76 ASP ASP A . n C 2 77 ARG 77 77 77 ARG ARG A . n C 2 78 PRO 78 78 78 PRO PRO A . n C 2 79 PRO 79 79 79 PRO PRO A . n C 2 80 LYS 80 80 80 LYS LYS A . n C 2 81 HIS 81 81 81 HIS HIS A . n C 2 82 SER 82 82 82 SER SER A . n C 2 83 GLN 83 83 83 GLN GLN A . n C 2 84 ASN 84 84 84 ASN ASN A . n C 2 85 GLY 85 85 85 GLY GLY A . n C 2 86 MET 86 86 86 MET MET A . n C 2 87 GLY 87 87 87 GLY GLY A . n C 2 88 LYS 88 88 88 LYS LYS A . n C 2 89 ASP 89 89 89 ASP ASP A . n C 2 90 ASP 90 90 90 ASP ASP A . n C 2 91 HIS 91 91 91 HIS HIS A . n C 2 92 TYR 92 92 92 TYR TYR A . n C 2 93 LEU 93 93 93 LEU LEU A . n C 2 94 LEU 94 94 94 LEU LEU A . n C 2 95 GLU 95 95 95 GLU GLU A . n C 2 96 PHE 96 96 96 PHE PHE A . n C 2 97 PRO 97 97 97 PRO PRO A . n C 2 98 THR 98 98 98 THR THR A . n C 2 99 PHE 99 99 99 PHE PHE A . n C 2 100 PRO 100 100 100 PRO PRO A . n C 2 101 ASP 101 101 101 ASP ASP A . n C 2 102 GLY 102 102 102 GLY GLY A . n C 2 103 HIS 103 103 103 HIS HIS A . n C 2 104 ASP 104 104 104 ASP ASP A . n C 2 105 TYR 105 105 105 TYR TYR A . n C 2 106 LYS 106 106 106 LYS LYS A . n C 2 107 PHE 107 107 107 PHE PHE A . n C 2 108 ASP 108 108 108 ASP ASP A . n C 2 109 SER 109 109 109 SER SER A . n C 2 110 LYS 110 110 110 LYS LYS A . n C 2 111 LYS 111 111 111 LYS LYS A . n C 2 112 PRO 112 112 112 PRO PRO A . n C 2 113 LYS 113 113 113 LYS LYS A . n C 2 114 GLU 114 114 114 GLU GLU A . n C 2 115 ASP 115 115 115 ASP ASP A . n C 2 116 PRO 116 116 116 PRO PRO A . n C 2 117 GLY 117 117 117 GLY GLY A . n C 2 118 PRO 118 118 118 PRO PRO A . n C 2 119 ALA 119 119 119 ALA ALA A . n C 2 120 ARG 120 120 120 ARG ARG A . n C 2 121 VAL 121 121 121 VAL VAL A . n C 2 122 ILE 122 122 122 ILE ILE A . n C 2 123 TYR 123 123 123 TYR TYR A . n C 2 124 THR 124 124 124 THR THR A . n C 2 125 TYR 125 125 125 TYR TYR A . n C 2 126 PRO 126 126 126 PRO PRO A . n C 2 127 ASN 127 127 127 ASN ASN A . n C 2 128 LYS 128 128 128 LYS LYS A . n C 2 129 VAL 129 129 129 VAL VAL A . n C 2 130 PHE 130 130 130 PHE PHE A . n C 2 131 CYS 131 131 131 CYS CYS A . n C 2 132 GLY 132 132 132 GLY GLY A . n C 2 133 ILE 133 133 133 ILE ILE A . n C 2 134 VAL 134 134 134 VAL VAL A . n C 2 135 ALA 135 135 135 ALA ALA A . n C 2 136 HIS 136 136 136 HIS HIS A . n C 2 137 GLN 137 137 137 GLN GLN A . n C 2 138 ARG 138 138 138 ARG ARG A . n C 2 139 GLY 139 139 139 GLY GLY A . n C 2 140 ASN 140 140 140 ASN ASN A . n C 2 141 GLN 141 141 141 GLN GLN A . n C 2 142 GLY 142 142 142 GLY GLY A . n C 2 143 ASP 143 143 143 ASP ASP A . n C 2 144 LEU 144 144 144 LEU LEU A . n C 2 145 ARG 145 145 145 ARG ARG A . n C 2 146 LEU 146 146 146 LEU LEU A . n C 2 147 CYS 147 147 147 CYS CYS A . n C 2 148 SER 148 148 148 SER SER A . n C 2 149 HIS 149 149 149 HIS HIS A . n D 2 1 ALA 1 1 1 ALA ALA B . n D 2 2 THR 2 2 2 THR THR B . n D 2 3 TRP 3 3 3 TRP TRP B . n D 2 4 THR 4 4 4 THR THR B . n D 2 5 CYS 5 5 5 CYS CYS B . n D 2 6 ILE 6 6 6 ILE ILE B . n D 2 7 ASN 7 7 7 ASN ASN B . n D 2 8 GLN 8 8 8 GLN GLN B . n D 2 9 GLN 9 9 9 GLN GLN B . n D 2 10 LEU 10 10 10 LEU LEU B . n D 2 11 ASN 11 11 11 ASN ASN B . n D 2 12 PRO 12 12 12 PRO PRO B . n D 2 13 LYS 13 13 13 LYS LYS B . n D 2 14 THR 14 14 14 THR THR B . n D 2 15 ASN 15 15 15 ASN ASN B . n D 2 16 LYS 16 16 16 LYS LYS B . n D 2 17 TRP 17 17 17 TRP TRP B . n D 2 18 GLU 18 18 18 GLU GLU B . n D 2 19 ASP 19 19 19 ASP ASP B . n D 2 20 LYS 20 20 20 LYS LYS B . n D 2 21 ARG 21 21 21 ARG ARG B . n D 2 22 LEU 22 22 22 LEU LEU B . n D 2 23 LEU 23 23 23 LEU LEU B . n D 2 24 TYR 24 24 24 TYR TYR B . n D 2 25 SER 25 25 25 SER SER B . n D 2 26 GLN 26 26 26 GLN GLN B . n D 2 27 ALA 27 27 27 ALA ALA B . n D 2 28 LYS 28 28 28 LYS LYS B . n D 2 29 ALA 29 29 29 ALA ALA B . n D 2 30 GLU 30 30 30 GLU GLU B . n D 2 31 SER 31 31 31 SER SER B . n D 2 32 ASN 32 32 32 ASN ASN B . n D 2 33 SER 33 33 33 SER SER B . n D 2 34 HIS 34 34 34 HIS HIS B . n D 2 35 HIS 35 35 35 HIS HIS B . n D 2 36 ALA 36 36 36 ALA ALA B . n D 2 37 PRO 37 37 37 PRO PRO B . n D 2 38 LEU 38 38 38 LEU LEU B . n D 2 39 SER 39 39 39 SER SER B . n D 2 40 ASP 40 40 40 ASP ASP B . n D 2 41 GLY 41 41 41 GLY GLY B . n D 2 42 LYS 42 42 42 LYS LYS B . n D 2 43 THR 43 43 43 THR THR B . n D 2 44 GLY 44 44 44 GLY GLY B . n D 2 45 SER 45 45 45 SER SER B . n D 2 46 SER 46 46 46 SER SER B . n D 2 47 TYR 47 47 47 TYR TYR B . n D 2 48 PRO 48 48 48 PRO PRO B . n D 2 49 HIS 49 49 49 HIS HIS B . n D 2 50 TRP 50 50 50 TRP TRP B . n D 2 51 PHE 51 51 51 PHE PHE B . n D 2 52 THR 52 52 52 THR THR B . n D 2 53 ASN 53 53 53 ASN ASN B . n D 2 54 GLY 54 54 54 GLY GLY B . n D 2 55 TYR 55 55 55 TYR TYR B . n D 2 56 ASP 56 56 56 ASP ASP B . n D 2 57 GLY 57 57 57 GLY GLY B . n D 2 58 ASN 58 58 58 ASN ASN B . n D 2 59 GLY 59 59 59 GLY GLY B . n D 2 60 LYS 60 60 60 LYS LYS B . n D 2 61 LEU 61 61 61 LEU LEU B . n D 2 62 ILE 62 62 62 ILE ILE B . n D 2 63 LYS 63 63 63 LYS LYS B . n D 2 64 GLY 64 64 64 GLY GLY B . n D 2 65 ARG 65 65 65 ARG ARG B . n D 2 66 THR 66 66 66 THR THR B . n D 2 67 PRO 67 67 67 PRO PRO B . n D 2 68 ILE 68 68 68 ILE ILE B . n D 2 69 LYS 69 69 69 LYS LYS B . n D 2 70 PHE 70 70 70 PHE PHE B . n D 2 71 GLY 71 71 71 GLY GLY B . n D 2 72 LYS 72 72 72 LYS LYS B . n D 2 73 ALA 73 73 73 ALA ALA B . n D 2 74 ASP 74 74 74 ASP ASP B . n D 2 75 CYS 75 75 75 CYS CYS B . n D 2 76 ASP 76 76 76 ASP ASP B . n D 2 77 ARG 77 77 77 ARG ARG B . n D 2 78 PRO 78 78 78 PRO PRO B . n D 2 79 PRO 79 79 79 PRO PRO B . n D 2 80 LYS 80 80 80 LYS LYS B . n D 2 81 HIS 81 81 81 HIS HIS B . n D 2 82 SER 82 82 82 SER SER B . n D 2 83 GLN 83 83 83 GLN GLN B . n D 2 84 ASN 84 84 84 ASN ASN B . n D 2 85 GLY 85 85 85 GLY GLY B . n D 2 86 MET 86 86 86 MET MET B . n D 2 87 GLY 87 87 87 GLY GLY B . n D 2 88 LYS 88 88 88 LYS LYS B . n D 2 89 ASP 89 89 89 ASP ASP B . n D 2 90 ASP 90 90 90 ASP ASP B . n D 2 91 HIS 91 91 91 HIS HIS B . n D 2 92 TYR 92 92 92 TYR TYR B . n D 2 93 LEU 93 93 93 LEU LEU B . n D 2 94 LEU 94 94 94 LEU LEU B . n D 2 95 GLU 95 95 95 GLU GLU B . n D 2 96 PHE 96 96 96 PHE PHE B . n D 2 97 PRO 97 97 97 PRO PRO B . n D 2 98 THR 98 98 98 THR THR B . n D 2 99 PHE 99 99 99 PHE PHE B . n D 2 100 PRO 100 100 100 PRO PRO B . n D 2 101 ASP 101 101 101 ASP ASP B . n D 2 102 GLY 102 102 102 GLY GLY B . n D 2 103 HIS 103 103 103 HIS HIS B . n D 2 104 ASP 104 104 104 ASP ASP B . n D 2 105 TYR 105 105 105 TYR TYR B . n D 2 106 LYS 106 106 106 LYS LYS B . n D 2 107 PHE 107 107 107 PHE PHE B . n D 2 108 ASP 108 108 108 ASP ASP B . n D 2 109 SER 109 109 109 SER SER B . n D 2 110 LYS 110 110 110 LYS LYS B . n D 2 111 LYS 111 111 111 LYS LYS B . n D 2 112 PRO 112 112 112 PRO PRO B . n D 2 113 LYS 113 113 113 LYS LYS B . n D 2 114 GLU 114 114 114 GLU GLU B . n D 2 115 ASP 115 115 115 ASP ASP B . n D 2 116 PRO 116 116 116 PRO PRO B . n D 2 117 GLY 117 117 117 GLY GLY B . n D 2 118 PRO 118 118 118 PRO PRO B . n D 2 119 ALA 119 119 119 ALA ALA B . n D 2 120 ARG 120 120 120 ARG ARG B . n D 2 121 VAL 121 121 121 VAL VAL B . n D 2 122 ILE 122 122 122 ILE ILE B . n D 2 123 TYR 123 123 123 TYR TYR B . n D 2 124 THR 124 124 124 THR THR B . n D 2 125 TYR 125 125 125 TYR TYR B . n D 2 126 PRO 126 126 126 PRO PRO B . n D 2 127 ASN 127 127 127 ASN ASN B . n D 2 128 LYS 128 128 128 LYS LYS B . n D 2 129 VAL 129 129 129 VAL VAL B . n D 2 130 PHE 130 130 130 PHE PHE B . n D 2 131 CYS 131 131 131 CYS CYS B . n D 2 132 GLY 132 132 132 GLY GLY B . n D 2 133 ILE 133 133 133 ILE ILE B . n D 2 134 VAL 134 134 134 VAL VAL B . n D 2 135 ALA 135 135 135 ALA ALA B . n D 2 136 HIS 136 136 136 HIS HIS B . n D 2 137 GLN 137 137 137 GLN GLN B . n D 2 138 ARG 138 138 138 ARG ARG B . n D 2 139 GLY 139 139 139 GLY GLY B . n D 2 140 ASN 140 140 140 ASN ASN B . n D 2 141 GLN 141 141 141 GLN GLN B . n D 2 142 GLY 142 142 142 GLY GLY B . n D 2 143 ASP 143 143 143 ASP ASP B . n D 2 144 LEU 144 144 144 LEU LEU B . n D 2 145 ARG 145 145 145 ARG ARG B . n D 2 146 LEU 146 146 146 LEU LEU B . n D 2 147 CYS 147 147 147 CYS CYS B . n D 2 148 SER 148 148 148 SER SER B . n D 2 149 HIS 149 149 149 HIS HIS B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 K 1 30 1 K K C . F 3 K 1 31 2 K K C . G 3 K 1 32 4 K K C . H 3 K 1 30 3 K K D . I 3 K 1 31 5 K K D . J 3 K 1 32 6 K K D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 C A 17 ? "O2'" ? A A 17 "O2'" 2 1 Y 0 D A 17 ? "O2'" ? B A 17 "O2'" # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALA 'data scaling' . ? 2 AMoRE phasing . ? 3 CNS refinement 1.0 ? 4 CCP4 'data scaling' '(SCALA)' ? 5 # _cell.entry_id 1JBT _cell.length_a 62.001 _cell.length_b 102.822 _cell.length_c 41.617 _cell.angle_alpha 90.00 _cell.angle_beta 93.88 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JBT _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # _exptl.entry_id 1JBT _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.52 _exptl_crystal.density_percent_sol 51.16 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details 'PEG5000, K.MES, KCl, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 PEG5000 ? ? ? 1 2 1 K.MES ? ? ? 1 3 1 KCl ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2001-05-27 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 14-BM-C' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 14-BM-C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.00 # _reflns.entry_id 1JBT _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 500.0 _reflns.d_resolution_high 2.7 _reflns.number_obs 14201 _reflns.number_all 14550 _reflns.percent_possible_obs 97.6 _reflns.pdbx_Rmerge_I_obs 0.071 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.2 _reflns.B_iso_Wilson_estimate 47.4 _reflns.pdbx_redundancy 3.1 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.70 _reflns_shell.d_res_low 2.75 _reflns_shell.percent_possible_all 96.5 _reflns_shell.Rmerge_I_obs 0.448 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.8 _reflns_shell.pdbx_redundancy 2.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1JBT _refine.ls_number_reflns_obs 13019 _refine.ls_number_reflns_all 14363 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 19.77 _refine.ls_d_res_high 2.70 _refine.ls_percent_reflns_obs 90.9 _refine.ls_R_factor_obs 0.229 _refine.ls_R_factor_all 0.229 _refine.ls_R_factor_R_work 0.2238 _refine.ls_R_factor_R_free 0.282 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.5 _refine.ls_number_reflns_R_free 982 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 44.5 _refine.aniso_B[1][1] -2.44 _refine.aniso_B[2][2] -16.77 _refine.aniso_B[3][3] 14.33 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -20.02 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details 'flat model' _refine.solvent_model_param_ksol 0.296617 _refine.solvent_model_param_bsol 21.8659 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB entry 1AQZ' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model isotropic _refine.pdbx_stereochemistry_target_values 'CNS_solve 1.0 topology and parameter files' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1JBT _refine_analyze.Luzzati_coordinate_error_obs 0.40 _refine_analyze.Luzzati_sigma_a_obs 0.65 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.52 _refine_analyze.Luzzati_sigma_a_free 0.73 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2382 _refine_hist.pdbx_number_atoms_nucleic_acid 1242 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 3630 _refine_hist.d_res_high 2.70 _refine_hist.d_res_low 19.77 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 24.8 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.86 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 2.46 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 4.08 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 3.11 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 4.43 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.70 _refine_ls_shell.d_res_low 2.87 _refine_ls_shell.number_reflns_R_work 1720 _refine_ls_shell.R_factor_R_work 0.389 _refine_ls_shell.percent_reflns_obs 78.6 _refine_ls_shell.R_factor_R_free 0.417 _refine_ls_shell.R_factor_R_free_error 0.034 _refine_ls_shell.percent_reflns_R_free 7.9 _refine_ls_shell.number_reflns_R_free 148 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 DNA-RNA-ALLATOM.PARAM DNA-RNA-ALLATOM.TOP 'X-RAY DIFFRACTION' 3 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' 4 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1JBT _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1JBT _struct.title 'CRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOG' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1JBT _struct_keywords.pdbx_keywords HYDROLASE/RNA _struct_keywords.text 'restrictocin, ribotoxin, highly specific ribonuclease, ribonuclease T1, protein-RNA recognition, HYDROLASE-RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP RNMG_ASPRE 2 ;ATWTCINQQLNPKTNKWEDKRLLYSQAKAESNSHHAPLSDGKTGSSYPHWFTNGYDGNGKLIKGRTPIKFGKADCDRPPK HSQNGMGKDDHYLLEFPTFPDGHDYKFDSKKPKEDPGPARVIYTYPNKVFCGIVAHQRGNQGDLRLCSH ; 28 P67876 ? 2 PDB 1JBT 1 ? ? 1JBT ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1JBT A 1 ? 149 ? P67876 28 ? 176 ? 1 149 2 1 1JBT B 1 ? 149 ? P67876 28 ? 176 ? 1 149 3 2 1JBT C 1 ? 29 ? 1JBT 1 ? 29 ? 1 29 4 2 1JBT D 1 ? 29 ? 1JBT 1 ? 29 ? 1 29 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E,F,G 2 1 B,D,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN C 26 ? ALA C 36 ? GLN A 26 ALA A 36 1 ? 11 HELX_P HELX_P2 2 GLN D 26 ? ALA D 36 ? GLN B 26 ALA B 36 1 ? 11 HELX_P HELX_P3 3 LYS D 72 ? ARG D 77 ? LYS B 72 ARG B 77 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? C CYS 5 SG ? ? ? 1_555 C CYS 147 SG ? ? A CYS 5 A CYS 147 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf2 disulf ? ? C CYS 75 SG ? ? ? 1_555 C CYS 131 SG ? ? A CYS 75 A CYS 131 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf3 disulf ? ? D CYS 5 SG ? ? ? 1_555 D CYS 147 SG ? ? B CYS 5 B CYS 147 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf4 disulf ? ? D CYS 75 SG ? ? ? 1_555 D CYS 131 SG ? ? B CYS 75 B CYS 131 1_555 ? ? ? ? ? ? ? 2.039 ? ? metalc1 metalc ? ? A U 7 O4 ? ? ? 1_555 E K . K ? ? C U 7 C K 30 1_555 ? ? ? ? ? ? ? 2.526 ? ? metalc2 metalc ? ? A G 14 O6 ? ? ? 1_555 F K . K ? ? C G 14 C K 31 1_555 ? ? ? ? ? ? ? 2.591 ? ? metalc3 metalc ? ? A G 24 N7 ? ? ? 1_555 G K . K ? ? C G 24 C K 32 1_555 ? ? ? ? ? ? ? 2.953 ? ? metalc4 metalc ? ? A G 24 O6 ? ? ? 1_555 G K . K ? ? C G 24 C K 32 1_555 ? ? ? ? ? ? ? 2.571 ? ? metalc5 metalc ? ? B U 7 O4 ? ? ? 1_555 J K . K ? ? D U 7 D K 32 1_555 ? ? ? ? ? ? ? 2.732 ? ? metalc6 metalc ? ? B G 14 O6 ? ? ? 1_555 H K . K ? ? D G 14 D K 30 1_555 ? ? ? ? ? ? ? 2.817 ? ? metalc7 metalc ? ? B A 21 OP2 ? ? ? 1_555 J K . K ? ? D A 21 D K 32 1_555 ? ? ? ? ? ? ? 3.650 ? ? metalc8 metalc ? ? B G 24 O6 ? ? ? 1_555 I K . K ? ? D G 24 D K 31 1_555 ? ? ? ? ? ? ? 2.679 ? ? metalc9 metalc ? ? B G 24 N7 ? ? ? 1_555 I K . K ? ? D G 24 D K 31 1_555 ? ? ? ? ? ? ? 3.281 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 A G 29 N1 ? ? C C 1 C G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 A G 29 O6 ? ? C C 1 C G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 A G 29 N2 ? ? C C 1 C G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 28 N3 ? ? C G 2 C C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 28 O2 ? ? C G 2 C C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 28 N4 ? ? C G 2 C C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 27 N1 ? ? C C 3 C G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 27 O6 ? ? C C 3 C G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 27 N2 ? ? C C 3 C G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 26 N1 ? ? C U 4 C A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 26 N6 ? ? C U 4 C A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 25 N1 ? ? C C 5 C G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 25 O6 ? ? C C 5 C G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 25 N2 ? ? C C 5 C G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 24 N1 ? ? C C 6 C G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 24 O6 ? ? C C 6 C G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 24 N2 ? ? C C 6 C G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 7 O2 ? ? ? 1_555 A C 23 N4 ? ? C U 7 C C 23 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog19 hydrog ? ? A C 8 O2 ? ? ? 1_555 A C 22 N4 ? ? C C 8 C C 22 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog20 hydrog ? ? A C 8 O2 ? ? ? 1_555 A C 23 N4 ? ? C C 8 C C 23 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog21 hydrog ? ? A A 9 N6 ? ? ? 1_555 A A 21 N7 ? ? C A 9 C A 21 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog22 hydrog ? ? A A 9 N7 ? ? ? 1_555 A A 21 N6 ? ? C A 9 C A 21 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog23 hydrog ? ? A G 10 N2 ? ? ? 1_555 A U 11 O4 ? ? C G 10 C U 11 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog24 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 20 N7 ? ? C U 11 C A 20 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog25 hydrog ? ? A U 11 O2 ? ? ? 1_555 A A 20 N6 ? ? C U 11 C A 20 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog26 hydrog ? ? A A 12 N6 ? ? ? 1_555 A G 19 N3 ? ? C A 12 C G 19 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog27 hydrog ? ? A A 12 N7 ? ? ? 1_555 A G 19 N2 ? ? C A 12 C G 19 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog28 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 18 N1 ? ? C C 13 C G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 18 O6 ? ? C C 13 C G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 18 N2 ? ? C C 13 C G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B C 1 N3 ? ? ? 1_555 B G 29 N1 ? ? D C 1 D G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B C 1 N4 ? ? ? 1_555 B G 29 O6 ? ? D C 1 D G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B C 1 O2 ? ? ? 1_555 B G 29 N2 ? ? D C 1 D G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 28 N3 ? ? D G 2 D C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 28 O2 ? ? D G 2 D C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 28 N4 ? ? D G 2 D C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B C 3 N3 ? ? ? 1_555 B G 27 N1 ? ? D C 3 D G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B C 3 N4 ? ? ? 1_555 B G 27 O6 ? ? D C 3 D G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B C 3 O2 ? ? ? 1_555 B G 27 N2 ? ? D C 3 D G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B U 4 N3 ? ? ? 1_555 B A 26 N1 ? ? D U 4 D A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B U 4 O4 ? ? ? 1_555 B A 26 N6 ? ? D U 4 D A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B C 5 N3 ? ? ? 1_555 B G 25 N1 ? ? D C 5 D G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B C 5 N4 ? ? ? 1_555 B G 25 O6 ? ? D C 5 D G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B C 5 O2 ? ? ? 1_555 B G 25 N2 ? ? D C 5 D G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B C 6 N3 ? ? ? 1_555 B G 24 N1 ? ? D C 6 D G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B C 6 N4 ? ? ? 1_555 B G 24 O6 ? ? D C 6 D G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B C 6 O2 ? ? ? 1_555 B G 24 N2 ? ? D C 6 D G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B U 7 O2 ? ? ? 1_555 B C 23 N4 ? ? D U 7 D C 23 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog49 hydrog ? ? B C 8 O2 ? ? ? 1_555 B C 22 N4 ? ? D C 8 D C 22 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog50 hydrog ? ? B C 8 O2 ? ? ? 1_555 B C 23 N4 ? ? D C 8 D C 23 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog51 hydrog ? ? B A 9 N6 ? ? ? 1_555 B A 21 N7 ? ? D A 9 D A 21 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog52 hydrog ? ? B A 9 N7 ? ? ? 1_555 B A 21 N6 ? ? D A 9 D A 21 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog53 hydrog ? ? B G 10 N2 ? ? ? 1_555 B U 11 O4 ? ? D G 10 D U 11 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog54 hydrog ? ? B U 11 N3 ? ? ? 1_555 B A 20 N7 ? ? D U 11 D A 20 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog55 hydrog ? ? B U 11 O2 ? ? ? 1_555 B A 20 N6 ? ? D U 11 D A 20 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog56 hydrog ? ? B A 12 N6 ? ? ? 1_555 B G 19 N3 ? ? D A 12 D G 19 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog57 hydrog ? ? B A 12 N7 ? ? ? 1_555 B G 19 N2 ? ? D A 12 D G 19 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog58 hydrog ? ? B C 13 N3 ? ? ? 1_555 B G 18 N1 ? ? D C 13 D G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B C 13 N4 ? ? ? 1_555 B G 18 O6 ? ? D C 13 D G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B C 13 O2 ? ? ? 1_555 B G 18 N2 ? ? D C 13 D G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A G 24 ? C G 24 ? 1_555 K ? G K . ? C K 32 ? 1_555 O6 ? A G 24 ? C G 24 ? 1_555 67.6 ? 2 O4 ? B U 7 ? D U 7 ? 1_555 K ? J K . ? D K 32 ? 1_555 OP2 ? B A 21 ? D A 21 ? 1_555 115.1 ? 3 O6 ? B G 24 ? D G 24 ? 1_555 K ? I K . ? D K 31 ? 1_555 N7 ? B G 24 ? D G 24 ? 1_555 61.7 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS C 5 ? CYS C 147 ? CYS A 5 ? 1_555 CYS A 147 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS C 75 ? CYS C 131 ? CYS A 75 ? 1_555 CYS A 131 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS D 5 ? CYS D 147 ? CYS B 5 ? 1_555 CYS B 147 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS D 75 ? CYS D 131 ? CYS B 75 ? 1_555 CYS B 131 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 47 C . ? TYR 47 A PRO 48 C ? PRO 48 A 1 -0.85 2 LYS 111 C . ? LYS 111 A PRO 112 C ? PRO 112 A 1 -2.05 3 TYR 125 C . ? TYR 125 A PRO 126 C ? PRO 126 A 1 -0.78 4 TYR 47 D . ? TYR 47 B PRO 48 D ? PRO 48 B 1 -0.17 5 LYS 111 D . ? LYS 111 B PRO 112 D ? PRO 112 B 1 -1.02 6 TYR 125 D . ? TYR 125 B PRO 126 D ? PRO 126 B 1 1.78 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 5 ? C ? 2 ? D ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR C 2 ? GLN C 9 ? THR A 2 GLN A 9 A 2 GLU C 18 ? SER C 25 ? GLU A 18 SER A 25 B 1 HIS C 49 ? TRP C 50 ? HIS A 49 TRP A 50 B 2 LEU C 93 ? PRO C 97 ? LEU A 93 PRO A 97 B 3 ALA C 119 ? THR C 124 ? ALA A 119 THR A 124 B 4 PHE C 130 ? HIS C 136 ? PHE A 130 HIS A 136 B 5 LEU C 144 ? LEU C 146 ? LEU A 144 LEU A 146 C 1 THR D 2 ? LEU D 10 ? THR B 2 LEU B 10 C 2 TRP D 17 ? SER D 25 ? TRP B 17 SER B 25 D 1 HIS D 49 ? PHE D 51 ? HIS B 49 PHE B 51 D 2 LEU D 93 ? PRO D 97 ? LEU B 93 PRO B 97 D 3 ALA D 119 ? THR D 124 ? ALA B 119 THR B 124 D 4 PHE D 130 ? ALA D 135 ? PHE B 130 ALA B 135 D 5 ARG D 145 ? LEU D 146 ? ARG B 145 LEU B 146 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLN C 9 ? O GLN A 9 N GLU C 18 ? N GLU A 18 B 1 2 N HIS C 49 ? N HIS A 49 O GLU C 95 ? O GLU A 95 B 2 3 O PHE C 96 ? O PHE A 96 N VAL C 121 ? N VAL A 121 B 3 4 O ILE C 122 ? O ILE A 122 N CYS C 131 ? N CYS A 131 B 4 5 N ALA C 135 ? N ALA A 135 O ARG C 145 ? O ARG A 145 C 1 2 O GLN D 9 ? O GLN B 9 N GLU D 18 ? N GLU B 18 D 1 2 N PHE D 51 ? N PHE B 51 O LEU D 93 ? O LEU B 93 D 2 3 O PHE D 96 ? O PHE B 96 N VAL D 121 ? N VAL B 121 D 3 4 O ILE D 122 ? O ILE B 122 N CYS D 131 ? N CYS B 131 D 4 5 O ALA D 135 ? O ALA B 135 N ARG D 145 ? N ARG B 145 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software C K 30 ? 1 'BINDING SITE FOR RESIDUE K C 30' AC2 Software C K 31 ? 1 'BINDING SITE FOR RESIDUE K C 31' AC3 Software D K 30 ? 1 'BINDING SITE FOR RESIDUE K D 30' AC4 Software C K 32 ? 1 'BINDING SITE FOR RESIDUE K C 32' AC5 Software D K 31 ? 1 'BINDING SITE FOR RESIDUE K D 31' AC6 Software D K 32 ? 2 'BINDING SITE FOR RESIDUE K D 32' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 U A 7 ? U C 7 . ? 1_555 ? 2 AC2 1 G A 14 ? G C 14 . ? 1_555 ? 3 AC3 1 G B 14 ? G D 14 . ? 1_555 ? 4 AC4 1 G A 24 ? G C 24 . ? 1_555 ? 5 AC5 1 G B 24 ? G D 24 . ? 1_555 ? 6 AC6 2 U B 7 ? U D 7 . ? 1_555 ? 7 AC6 2 A B 21 ? A D 21 . ? 1_555 ? # _pdbx_entry_details.entry_id 1JBT _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 2 ? ? -160.10 119.26 2 1 ASN A 11 ? ? -27.83 94.68 3 1 LYS A 13 ? ? -79.91 26.36 4 1 THR A 14 ? ? -169.94 -57.89 5 1 ASN A 15 ? ? 113.11 -41.02 6 1 LEU A 38 ? ? -102.48 53.22 7 1 SER A 46 ? ? 100.38 7.21 8 1 ALA A 73 ? ? -57.57 -177.05 9 1 ASP A 74 ? ? 73.79 -69.60 10 1 PRO A 78 ? ? -39.16 126.21 11 1 GLN A 83 ? ? 27.44 -97.62 12 1 ASN A 84 ? ? -57.23 -7.93 13 1 MET A 86 ? ? -82.55 45.69 14 1 LYS A 88 ? ? -48.34 -12.94 15 1 PHE A 107 ? ? -48.33 -18.78 16 1 LYS A 111 ? ? 50.42 78.85 17 1 ASN B 15 ? ? 52.00 11.38 18 1 HIS B 35 ? ? -57.82 -9.82 19 1 PRO B 37 ? ? -47.03 152.94 20 1 LYS B 42 ? ? -154.97 24.33 21 1 SER B 46 ? ? 95.00 -6.10 22 1 MET B 86 ? ? -153.11 22.00 23 1 LYS B 88 ? ? -52.27 -9.17 24 1 HIS B 91 ? ? -160.04 110.81 25 1 ASP B 108 ? ? -105.37 60.73 26 1 LYS B 111 ? ? 50.96 84.16 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 G OP3 O N N 160 G P P N N 161 G OP1 O N N 162 G OP2 O N N 163 G "O5'" O N N 164 G "C5'" C N N 165 G "C4'" C N R 166 G "O4'" O N N 167 G "C3'" C N S 168 G "O3'" O N N 169 G "C2'" C N R 170 G "O2'" O N N 171 G "C1'" C N R 172 G N9 N Y N 173 G C8 C Y N 174 G N7 N Y N 175 G C5 C Y N 176 G C6 C N N 177 G O6 O N N 178 G N1 N N N 179 G C2 C N N 180 G N2 N N N 181 G N3 N N N 182 G C4 C Y N 183 G HOP3 H N N 184 G HOP2 H N N 185 G "H5'" H N N 186 G "H5''" H N N 187 G "H4'" H N N 188 G "H3'" H N N 189 G "HO3'" H N N 190 G "H2'" H N N 191 G "HO2'" H N N 192 G "H1'" H N N 193 G H8 H N N 194 G H1 H N N 195 G H21 H N N 196 G H22 H N N 197 GLN N N N N 198 GLN CA C N S 199 GLN C C N N 200 GLN O O N N 201 GLN CB C N N 202 GLN CG C N N 203 GLN CD C N N 204 GLN OE1 O N N 205 GLN NE2 N N N 206 GLN OXT O N N 207 GLN H H N N 208 GLN H2 H N N 209 GLN HA H N N 210 GLN HB2 H N N 211 GLN HB3 H N N 212 GLN HG2 H N N 213 GLN HG3 H N N 214 GLN HE21 H N N 215 GLN HE22 H N N 216 GLN HXT H N N 217 GLU N N N N 218 GLU CA C N S 219 GLU C C N N 220 GLU O O N N 221 GLU CB C N N 222 GLU CG C N N 223 GLU CD C N N 224 GLU OE1 O N N 225 GLU OE2 O N N 226 GLU OXT O N N 227 GLU H H N N 228 GLU H2 H N N 229 GLU HA H N N 230 GLU HB2 H N N 231 GLU HB3 H N N 232 GLU HG2 H N N 233 GLU HG3 H N N 234 GLU HE2 H N N 235 GLU HXT H N N 236 GLY N N N N 237 GLY CA C N N 238 GLY C C N N 239 GLY O O N N 240 GLY OXT O N N 241 GLY H H N N 242 GLY H2 H N N 243 GLY HA2 H N N 244 GLY HA3 H N N 245 GLY HXT H N N 246 HIS N N N N 247 HIS CA C N S 248 HIS C C N N 249 HIS O O N N 250 HIS CB C N N 251 HIS CG C Y N 252 HIS ND1 N Y N 253 HIS CD2 C Y N 254 HIS CE1 C Y N 255 HIS NE2 N Y N 256 HIS OXT O N N 257 HIS H H N N 258 HIS H2 H N N 259 HIS HA H N N 260 HIS HB2 H N N 261 HIS HB3 H N N 262 HIS HD1 H N N 263 HIS HD2 H N N 264 HIS HE1 H N N 265 HIS HE2 H N N 266 HIS HXT H N N 267 ILE N N N N 268 ILE CA C N S 269 ILE C C N N 270 ILE O O N N 271 ILE CB C N S 272 ILE CG1 C N N 273 ILE CG2 C N N 274 ILE CD1 C N N 275 ILE OXT O N N 276 ILE H H N N 277 ILE H2 H N N 278 ILE HA H N N 279 ILE HB H N N 280 ILE HG12 H N N 281 ILE HG13 H N N 282 ILE HG21 H N N 283 ILE HG22 H N N 284 ILE HG23 H N N 285 ILE HD11 H N N 286 ILE HD12 H N N 287 ILE HD13 H N N 288 ILE HXT H N N 289 K K K N N 290 LEU N N N N 291 LEU CA C N S 292 LEU C C N N 293 LEU O O N N 294 LEU CB C N N 295 LEU CG C N N 296 LEU CD1 C N N 297 LEU CD2 C N N 298 LEU OXT O N N 299 LEU H H N N 300 LEU H2 H N N 301 LEU HA H N N 302 LEU HB2 H N N 303 LEU HB3 H N N 304 LEU HG H N N 305 LEU HD11 H N N 306 LEU HD12 H N N 307 LEU HD13 H N N 308 LEU HD21 H N N 309 LEU HD22 H N N 310 LEU HD23 H N N 311 LEU HXT H N N 312 LYS N N N N 313 LYS CA C N S 314 LYS C C N N 315 LYS O O N N 316 LYS CB C N N 317 LYS CG C N N 318 LYS CD C N N 319 LYS CE C N N 320 LYS NZ N N N 321 LYS OXT O N N 322 LYS H H N N 323 LYS H2 H N N 324 LYS HA H N N 325 LYS HB2 H N N 326 LYS HB3 H N N 327 LYS HG2 H N N 328 LYS HG3 H N N 329 LYS HD2 H N N 330 LYS HD3 H N N 331 LYS HE2 H N N 332 LYS HE3 H N N 333 LYS HZ1 H N N 334 LYS HZ2 H N N 335 LYS HZ3 H N N 336 LYS HXT H N N 337 MET N N N N 338 MET CA C N S 339 MET C C N N 340 MET O O N N 341 MET CB C N N 342 MET CG C N N 343 MET SD S N N 344 MET CE C N N 345 MET OXT O N N 346 MET H H N N 347 MET H2 H N N 348 MET HA H N N 349 MET HB2 H N N 350 MET HB3 H N N 351 MET HG2 H N N 352 MET HG3 H N N 353 MET HE1 H N N 354 MET HE2 H N N 355 MET HE3 H N N 356 MET HXT H N N 357 PHE N N N N 358 PHE CA C N S 359 PHE C C N N 360 PHE O O N N 361 PHE CB C N N 362 PHE CG C Y N 363 PHE CD1 C Y N 364 PHE CD2 C Y N 365 PHE CE1 C Y N 366 PHE CE2 C Y N 367 PHE CZ C Y N 368 PHE OXT O N N 369 PHE H H N N 370 PHE H2 H N N 371 PHE HA H N N 372 PHE HB2 H N N 373 PHE HB3 H N N 374 PHE HD1 H N N 375 PHE HD2 H N N 376 PHE HE1 H N N 377 PHE HE2 H N N 378 PHE HZ H N N 379 PHE HXT H N N 380 PRO N N N N 381 PRO CA C N S 382 PRO C C N N 383 PRO O O N N 384 PRO CB C N N 385 PRO CG C N N 386 PRO CD C N N 387 PRO OXT O N N 388 PRO H H N N 389 PRO HA H N N 390 PRO HB2 H N N 391 PRO HB3 H N N 392 PRO HG2 H N N 393 PRO HG3 H N N 394 PRO HD2 H N N 395 PRO HD3 H N N 396 PRO HXT H N N 397 SER N N N N 398 SER CA C N S 399 SER C C N N 400 SER O O N N 401 SER CB C N N 402 SER OG O N N 403 SER OXT O N N 404 SER H H N N 405 SER H2 H N N 406 SER HA H N N 407 SER HB2 H N N 408 SER HB3 H N N 409 SER HG H N N 410 SER HXT H N N 411 THR N N N N 412 THR CA C N S 413 THR C C N N 414 THR O O N N 415 THR CB C N R 416 THR OG1 O N N 417 THR CG2 C N N 418 THR OXT O N N 419 THR H H N N 420 THR H2 H N N 421 THR HA H N N 422 THR HB H N N 423 THR HG1 H N N 424 THR HG21 H N N 425 THR HG22 H N N 426 THR HG23 H N N 427 THR HXT H N N 428 TRP N N N N 429 TRP CA C N S 430 TRP C C N N 431 TRP O O N N 432 TRP CB C N N 433 TRP CG C Y N 434 TRP CD1 C Y N 435 TRP CD2 C Y N 436 TRP NE1 N Y N 437 TRP CE2 C Y N 438 TRP CE3 C Y N 439 TRP CZ2 C Y N 440 TRP CZ3 C Y N 441 TRP CH2 C Y N 442 TRP OXT O N N 443 TRP H H N N 444 TRP H2 H N N 445 TRP HA H N N 446 TRP HB2 H N N 447 TRP HB3 H N N 448 TRP HD1 H N N 449 TRP HE1 H N N 450 TRP HE3 H N N 451 TRP HZ2 H N N 452 TRP HZ3 H N N 453 TRP HH2 H N N 454 TRP HXT H N N 455 TYR N N N N 456 TYR CA C N S 457 TYR C C N N 458 TYR O O N N 459 TYR CB C N N 460 TYR CG C Y N 461 TYR CD1 C Y N 462 TYR CD2 C Y N 463 TYR CE1 C Y N 464 TYR CE2 C Y N 465 TYR CZ C Y N 466 TYR OH O N N 467 TYR OXT O N N 468 TYR H H N N 469 TYR H2 H N N 470 TYR HA H N N 471 TYR HB2 H N N 472 TYR HB3 H N N 473 TYR HD1 H N N 474 TYR HD2 H N N 475 TYR HE1 H N N 476 TYR HE2 H N N 477 TYR HH H N N 478 TYR HXT H N N 479 U OP3 O N N 480 U P P N N 481 U OP1 O N N 482 U OP2 O N N 483 U "O5'" O N N 484 U "C5'" C N N 485 U "C4'" C N R 486 U "O4'" O N N 487 U "C3'" C N S 488 U "O3'" O N N 489 U "C2'" C N R 490 U "O2'" O N N 491 U "C1'" C N R 492 U N1 N N N 493 U C2 C N N 494 U O2 O N N 495 U N3 N N N 496 U C4 C N N 497 U O4 O N N 498 U C5 C N N 499 U C6 C N N 500 U HOP3 H N N 501 U HOP2 H N N 502 U "H5'" H N N 503 U "H5''" H N N 504 U "H4'" H N N 505 U "H3'" H N N 506 U "HO3'" H N N 507 U "H2'" H N N 508 U "HO2'" H N N 509 U "H1'" H N N 510 U H3 H N N 511 U H5 H N N 512 U H6 H N N 513 VAL N N N N 514 VAL CA C N S 515 VAL C C N N 516 VAL O O N N 517 VAL CB C N N 518 VAL CG1 C N N 519 VAL CG2 C N N 520 VAL OXT O N N 521 VAL H H N N 522 VAL H2 H N N 523 VAL HA H N N 524 VAL HB H N N 525 VAL HG11 H N N 526 VAL HG12 H N N 527 VAL HG13 H N N 528 VAL HG21 H N N 529 VAL HG22 H N N 530 VAL HG23 H N N 531 VAL HXT H N N 532 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 G OP3 P sing N N 158 G OP3 HOP3 sing N N 159 G P OP1 doub N N 160 G P OP2 sing N N 161 G P "O5'" sing N N 162 G OP2 HOP2 sing N N 163 G "O5'" "C5'" sing N N 164 G "C5'" "C4'" sing N N 165 G "C5'" "H5'" sing N N 166 G "C5'" "H5''" sing N N 167 G "C4'" "O4'" sing N N 168 G "C4'" "C3'" sing N N 169 G "C4'" "H4'" sing N N 170 G "O4'" "C1'" sing N N 171 G "C3'" "O3'" sing N N 172 G "C3'" "C2'" sing N N 173 G "C3'" "H3'" sing N N 174 G "O3'" "HO3'" sing N N 175 G "C2'" "O2'" sing N N 176 G "C2'" "C1'" sing N N 177 G "C2'" "H2'" sing N N 178 G "O2'" "HO2'" sing N N 179 G "C1'" N9 sing N N 180 G "C1'" "H1'" sing N N 181 G N9 C8 sing Y N 182 G N9 C4 sing Y N 183 G C8 N7 doub Y N 184 G C8 H8 sing N N 185 G N7 C5 sing Y N 186 G C5 C6 sing N N 187 G C5 C4 doub Y N 188 G C6 O6 doub N N 189 G C6 N1 sing N N 190 G N1 C2 sing N N 191 G N1 H1 sing N N 192 G C2 N2 sing N N 193 G C2 N3 doub N N 194 G N2 H21 sing N N 195 G N2 H22 sing N N 196 G N3 C4 sing N N 197 GLN N CA sing N N 198 GLN N H sing N N 199 GLN N H2 sing N N 200 GLN CA C sing N N 201 GLN CA CB sing N N 202 GLN CA HA sing N N 203 GLN C O doub N N 204 GLN C OXT sing N N 205 GLN CB CG sing N N 206 GLN CB HB2 sing N N 207 GLN CB HB3 sing N N 208 GLN CG CD sing N N 209 GLN CG HG2 sing N N 210 GLN CG HG3 sing N N 211 GLN CD OE1 doub N N 212 GLN CD NE2 sing N N 213 GLN NE2 HE21 sing N N 214 GLN NE2 HE22 sing N N 215 GLN OXT HXT sing N N 216 GLU N CA sing N N 217 GLU N H sing N N 218 GLU N H2 sing N N 219 GLU CA C sing N N 220 GLU CA CB sing N N 221 GLU CA HA sing N N 222 GLU C O doub N N 223 GLU C OXT sing N N 224 GLU CB CG sing N N 225 GLU CB HB2 sing N N 226 GLU CB HB3 sing N N 227 GLU CG CD sing N N 228 GLU CG HG2 sing N N 229 GLU CG HG3 sing N N 230 GLU CD OE1 doub N N 231 GLU CD OE2 sing N N 232 GLU OE2 HE2 sing N N 233 GLU OXT HXT sing N N 234 GLY N CA sing N N 235 GLY N H sing N N 236 GLY N H2 sing N N 237 GLY CA C sing N N 238 GLY CA HA2 sing N N 239 GLY CA HA3 sing N N 240 GLY C O doub N N 241 GLY C OXT sing N N 242 GLY OXT HXT sing N N 243 HIS N CA sing N N 244 HIS N H sing N N 245 HIS N H2 sing N N 246 HIS CA C sing N N 247 HIS CA CB sing N N 248 HIS CA HA sing N N 249 HIS C O doub N N 250 HIS C OXT sing N N 251 HIS CB CG sing N N 252 HIS CB HB2 sing N N 253 HIS CB HB3 sing N N 254 HIS CG ND1 sing Y N 255 HIS CG CD2 doub Y N 256 HIS ND1 CE1 doub Y N 257 HIS ND1 HD1 sing N N 258 HIS CD2 NE2 sing Y N 259 HIS CD2 HD2 sing N N 260 HIS CE1 NE2 sing Y N 261 HIS CE1 HE1 sing N N 262 HIS NE2 HE2 sing N N 263 HIS OXT HXT sing N N 264 ILE N CA sing N N 265 ILE N H sing N N 266 ILE N H2 sing N N 267 ILE CA C sing N N 268 ILE CA CB sing N N 269 ILE CA HA sing N N 270 ILE C O doub N N 271 ILE C OXT sing N N 272 ILE CB CG1 sing N N 273 ILE CB CG2 sing N N 274 ILE CB HB sing N N 275 ILE CG1 CD1 sing N N 276 ILE CG1 HG12 sing N N 277 ILE CG1 HG13 sing N N 278 ILE CG2 HG21 sing N N 279 ILE CG2 HG22 sing N N 280 ILE CG2 HG23 sing N N 281 ILE CD1 HD11 sing N N 282 ILE CD1 HD12 sing N N 283 ILE CD1 HD13 sing N N 284 ILE OXT HXT sing N N 285 LEU N CA sing N N 286 LEU N H sing N N 287 LEU N H2 sing N N 288 LEU CA C sing N N 289 LEU CA CB sing N N 290 LEU CA HA sing N N 291 LEU C O doub N N 292 LEU C OXT sing N N 293 LEU CB CG sing N N 294 LEU CB HB2 sing N N 295 LEU CB HB3 sing N N 296 LEU CG CD1 sing N N 297 LEU CG CD2 sing N N 298 LEU CG HG sing N N 299 LEU CD1 HD11 sing N N 300 LEU CD1 HD12 sing N N 301 LEU CD1 HD13 sing N N 302 LEU CD2 HD21 sing N N 303 LEU CD2 HD22 sing N N 304 LEU CD2 HD23 sing N N 305 LEU OXT HXT sing N N 306 LYS N CA sing N N 307 LYS N H sing N N 308 LYS N H2 sing N N 309 LYS CA C sing N N 310 LYS CA CB sing N N 311 LYS CA HA sing N N 312 LYS C O doub N N 313 LYS C OXT sing N N 314 LYS CB CG sing N N 315 LYS CB HB2 sing N N 316 LYS CB HB3 sing N N 317 LYS CG CD sing N N 318 LYS CG HG2 sing N N 319 LYS CG HG3 sing N N 320 LYS CD CE sing N N 321 LYS CD HD2 sing N N 322 LYS CD HD3 sing N N 323 LYS CE NZ sing N N 324 LYS CE HE2 sing N N 325 LYS CE HE3 sing N N 326 LYS NZ HZ1 sing N N 327 LYS NZ HZ2 sing N N 328 LYS NZ HZ3 sing N N 329 LYS OXT HXT sing N N 330 MET N CA sing N N 331 MET N H sing N N 332 MET N H2 sing N N 333 MET CA C sing N N 334 MET CA CB sing N N 335 MET CA HA sing N N 336 MET C O doub N N 337 MET C OXT sing N N 338 MET CB CG sing N N 339 MET CB HB2 sing N N 340 MET CB HB3 sing N N 341 MET CG SD sing N N 342 MET CG HG2 sing N N 343 MET CG HG3 sing N N 344 MET SD CE sing N N 345 MET CE HE1 sing N N 346 MET CE HE2 sing N N 347 MET CE HE3 sing N N 348 MET OXT HXT sing N N 349 PHE N CA sing N N 350 PHE N H sing N N 351 PHE N H2 sing N N 352 PHE CA C sing N N 353 PHE CA CB sing N N 354 PHE CA HA sing N N 355 PHE C O doub N N 356 PHE C OXT sing N N 357 PHE CB CG sing N N 358 PHE CB HB2 sing N N 359 PHE CB HB3 sing N N 360 PHE CG CD1 doub Y N 361 PHE CG CD2 sing Y N 362 PHE CD1 CE1 sing Y N 363 PHE CD1 HD1 sing N N 364 PHE CD2 CE2 doub Y N 365 PHE CD2 HD2 sing N N 366 PHE CE1 CZ doub Y N 367 PHE CE1 HE1 sing N N 368 PHE CE2 CZ sing Y N 369 PHE CE2 HE2 sing N N 370 PHE CZ HZ sing N N 371 PHE OXT HXT sing N N 372 PRO N CA sing N N 373 PRO N CD sing N N 374 PRO N H sing N N 375 PRO CA C sing N N 376 PRO CA CB sing N N 377 PRO CA HA sing N N 378 PRO C O doub N N 379 PRO C OXT sing N N 380 PRO CB CG sing N N 381 PRO CB HB2 sing N N 382 PRO CB HB3 sing N N 383 PRO CG CD sing N N 384 PRO CG HG2 sing N N 385 PRO CG HG3 sing N N 386 PRO CD HD2 sing N N 387 PRO CD HD3 sing N N 388 PRO OXT HXT sing N N 389 SER N CA sing N N 390 SER N H sing N N 391 SER N H2 sing N N 392 SER CA C sing N N 393 SER CA CB sing N N 394 SER CA HA sing N N 395 SER C O doub N N 396 SER C OXT sing N N 397 SER CB OG sing N N 398 SER CB HB2 sing N N 399 SER CB HB3 sing N N 400 SER OG HG sing N N 401 SER OXT HXT sing N N 402 THR N CA sing N N 403 THR N H sing N N 404 THR N H2 sing N N 405 THR CA C sing N N 406 THR CA CB sing N N 407 THR CA HA sing N N 408 THR C O doub N N 409 THR C OXT sing N N 410 THR CB OG1 sing N N 411 THR CB CG2 sing N N 412 THR CB HB sing N N 413 THR OG1 HG1 sing N N 414 THR CG2 HG21 sing N N 415 THR CG2 HG22 sing N N 416 THR CG2 HG23 sing N N 417 THR OXT HXT sing N N 418 TRP N CA sing N N 419 TRP N H sing N N 420 TRP N H2 sing N N 421 TRP CA C sing N N 422 TRP CA CB sing N N 423 TRP CA HA sing N N 424 TRP C O doub N N 425 TRP C OXT sing N N 426 TRP CB CG sing N N 427 TRP CB HB2 sing N N 428 TRP CB HB3 sing N N 429 TRP CG CD1 doub Y N 430 TRP CG CD2 sing Y N 431 TRP CD1 NE1 sing Y N 432 TRP CD1 HD1 sing N N 433 TRP CD2 CE2 doub Y N 434 TRP CD2 CE3 sing Y N 435 TRP NE1 CE2 sing Y N 436 TRP NE1 HE1 sing N N 437 TRP CE2 CZ2 sing Y N 438 TRP CE3 CZ3 doub Y N 439 TRP CE3 HE3 sing N N 440 TRP CZ2 CH2 doub Y N 441 TRP CZ2 HZ2 sing N N 442 TRP CZ3 CH2 sing Y N 443 TRP CZ3 HZ3 sing N N 444 TRP CH2 HH2 sing N N 445 TRP OXT HXT sing N N 446 TYR N CA sing N N 447 TYR N H sing N N 448 TYR N H2 sing N N 449 TYR CA C sing N N 450 TYR CA CB sing N N 451 TYR CA HA sing N N 452 TYR C O doub N N 453 TYR C OXT sing N N 454 TYR CB CG sing N N 455 TYR CB HB2 sing N N 456 TYR CB HB3 sing N N 457 TYR CG CD1 doub Y N 458 TYR CG CD2 sing Y N 459 TYR CD1 CE1 sing Y N 460 TYR CD1 HD1 sing N N 461 TYR CD2 CE2 doub Y N 462 TYR CD2 HD2 sing N N 463 TYR CE1 CZ doub Y N 464 TYR CE1 HE1 sing N N 465 TYR CE2 CZ sing Y N 466 TYR CE2 HE2 sing N N 467 TYR CZ OH sing N N 468 TYR OH HH sing N N 469 TYR OXT HXT sing N N 470 U OP3 P sing N N 471 U OP3 HOP3 sing N N 472 U P OP1 doub N N 473 U P OP2 sing N N 474 U P "O5'" sing N N 475 U OP2 HOP2 sing N N 476 U "O5'" "C5'" sing N N 477 U "C5'" "C4'" sing N N 478 U "C5'" "H5'" sing N N 479 U "C5'" "H5''" sing N N 480 U "C4'" "O4'" sing N N 481 U "C4'" "C3'" sing N N 482 U "C4'" "H4'" sing N N 483 U "O4'" "C1'" sing N N 484 U "C3'" "O3'" sing N N 485 U "C3'" "C2'" sing N N 486 U "C3'" "H3'" sing N N 487 U "O3'" "HO3'" sing N N 488 U "C2'" "O2'" sing N N 489 U "C2'" "C1'" sing N N 490 U "C2'" "H2'" sing N N 491 U "O2'" "HO2'" sing N N 492 U "C1'" N1 sing N N 493 U "C1'" "H1'" sing N N 494 U N1 C2 sing N N 495 U N1 C6 sing N N 496 U C2 O2 doub N N 497 U C2 N3 sing N N 498 U N3 C4 sing N N 499 U N3 H3 sing N N 500 U C4 O4 doub N N 501 U C4 C5 sing N N 502 U C5 C6 doub N N 503 U C5 H5 sing N N 504 U C6 H6 sing N N 505 VAL N CA sing N N 506 VAL N H sing N N 507 VAL N H2 sing N N 508 VAL CA C sing N N 509 VAL CA CB sing N N 510 VAL CA HA sing N N 511 VAL C O doub N N 512 VAL C OXT sing N N 513 VAL CB CG1 sing N N 514 VAL CB CG2 sing N N 515 VAL CB HB sing N N 516 VAL CG1 HG11 sing N N 517 VAL CG1 HG12 sing N N 518 VAL CG1 HG13 sing N N 519 VAL CG2 HG21 sing N N 520 VAL CG2 HG22 sing N N 521 VAL CG2 HG23 sing N N 522 VAL OXT HXT sing N N 523 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1JBT 'double helix' 1JBT 'a-form double helix' 1JBT 'bulge loop' 1JBT 'mismatched base pair' 1JBT 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 18 1_555 A C 13 1_555 -0.505 -0.023 -0.052 -7.265 -10.990 1.958 1 C_G18:C13_C C 18 ? C 13 ? 19 1 1 A G 19 1_555 A A 12 1_555 6.778 -4.396 0.308 -2.390 -13.850 0.857 2 C_G19:A12_C C 19 ? C 12 ? 11 9 1 A A 20 1_555 A U 11 1_555 -4.008 -1.786 -0.557 -4.386 -10.108 -98.901 3 C_A20:U11_C C 20 ? C 11 ? 24 4 1 A A 21 1_555 A A 9 1_555 6.319 -5.250 0.040 14.896 -1.184 176.494 4 C_A21:A9_C C 21 ? C 9 ? 2 8 1 A C 22 1_555 A C 8 1_555 -7.046 -5.244 -0.641 8.034 -7.486 -0.002 5 C_C22:C8_C C 22 ? C 8 ? ? 6 1 A C 23 1_555 A U 7 1_555 -5.085 -2.094 -1.222 10.192 -8.844 -2.095 6 C_C23:U7_C C 23 ? C 7 ? ? ? 1 A G 24 1_555 A C 6 1_555 -0.213 -0.079 -0.238 -4.593 -4.856 5.948 7 C_G24:C6_C C 24 ? C 6 ? 19 1 1 A G 25 1_555 A C 5 1_555 -0.668 -0.202 -0.459 -10.346 -7.379 6.478 8 C_G25:C5_C C 25 ? C 5 ? 19 1 1 A A 26 1_555 A U 4 1_555 0.193 0.017 0.253 -6.411 -1.158 6.870 9 C_A26:U4_C C 26 ? C 4 ? 20 1 1 A G 27 1_555 A C 3 1_555 0.014 -0.205 -0.026 -3.019 -6.474 1.641 10 C_G27:C3_C C 27 ? C 3 ? 19 1 1 A C 28 1_555 A G 2 1_555 0.235 -0.040 -0.076 -4.694 -12.386 8.607 11 C_C28:G2_C C 28 ? C 2 ? 19 1 1 A G 29 1_555 A C 1 1_555 0.141 -0.070 -0.231 -6.956 -13.538 -0.870 12 C_G29:C1_C C 29 ? C 1 ? 19 1 1 B C 1 1_555 B G 29 1_555 0.067 -0.087 -0.306 9.131 -16.018 -1.899 13 D_C1:G29_D D 1 ? D 29 ? 19 1 1 B G 2 1_555 B C 28 1_555 -0.160 -0.103 0.073 4.308 -11.826 6.746 14 D_G2:C28_D D 2 ? D 28 ? 19 1 1 B C 3 1_555 B G 27 1_555 0.005 -0.301 0.045 3.341 -5.504 0.466 15 D_C3:G27_D D 3 ? D 27 ? 19 1 1 B U 4 1_555 B A 26 1_555 -0.346 -0.059 0.266 5.993 0.768 4.401 16 D_U4:A26_D D 4 ? D 26 ? 20 1 1 B C 5 1_555 B G 25 1_555 0.475 -0.208 -0.449 11.551 -7.912 4.883 17 D_C5:G25_D D 5 ? D 25 ? 19 1 1 B C 6 1_555 B G 24 1_555 -0.077 0.002 -0.172 3.831 -4.402 4.389 18 D_C6:G24_D D 6 ? D 24 ? 19 1 1 B U 7 1_555 B C 23 1_555 5.092 -2.091 -1.226 -9.226 -7.306 -1.990 19 D_U7:C23_D D 7 ? D 23 ? ? ? 1 B C 8 1_555 B C 22 1_555 7.030 -5.197 -0.761 -10.444 -8.245 0.452 20 D_C8:C22_D D 8 ? D 22 ? ? 6 1 B A 9 1_555 B A 21 1_555 -6.344 5.225 -0.013 -13.212 1.081 -176.583 21 D_A9:A21_D D 9 ? D 21 ? 2 8 1 B U 11 1_555 B A 20 1_555 3.997 -1.737 -0.611 5.717 -10.503 -99.457 22 D_U11:A20_D D 11 ? D 20 ? 24 4 1 B A 12 1_555 B G 19 1_555 -6.775 -4.390 0.276 2.515 -12.197 0.227 23 D_A12:G19_D D 12 ? D 19 ? 11 9 1 B C 13 1_555 B G 18 1_555 0.510 -0.043 -0.066 7.234 -9.924 1.180 24 D_C13:G18_D D 13 ? D 18 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 18 1_555 A C 13 1_555 A G 19 1_555 A A 12 1_555 -0.500 -0.572 3.274 1.955 6.994 65.532 -0.807 0.538 3.191 6.441 -1.801 65.889 1 CC_G18G19:A12C13_CC C 18 ? C 13 ? C 19 ? C 12 ? 1 A G 19 1_555 A A 12 1_555 A A 20 1_555 A U 11 1_555 -5.493 -0.768 3.281 0.276 2.727 -10.592 -0.466 -28.359 3.506 -14.459 1.462 -10.940 2 CC_G19A20:U11A12_CC C 19 ? C 12 ? C 20 ? C 11 ? 1 A A 20 1_555 A U 11 1_555 A A 21 1_555 A A 9 1_555 0.766 0.827 3.289 4.372 -1.620 -95.899 -0.529 0.591 3.271 1.090 2.943 -95.984 3 CC_A20A21:A9U11_CC C 20 ? C 11 ? C 21 ? C 9 ? 1 A A 21 1_555 A A 9 1_555 A C 22 1_555 A C 8 1_555 -0.317 -1.364 3.061 -4.299 -1.350 117.987 -0.783 0.145 3.077 -0.788 2.507 118.041 4 CC_A21C22:C8A9_CC C 21 ? C 9 ? C 22 ? C 8 ? 1 A C 22 1_555 A C 8 1_555 A C 23 1_555 A U 7 1_555 -0.203 -0.764 3.566 -8.102 10.623 46.032 -1.849 -0.441 3.312 13.259 10.113 47.830 5 CC_C22C23:U7C8_CC C 22 ? C 8 ? C 23 ? C 7 ? 1 A C 23 1_555 A U 7 1_555 A G 24 1_555 A C 6 1_555 0.548 -1.074 3.942 -12.369 10.555 47.559 -2.150 -1.682 3.413 12.664 14.841 50.109 6 CC_C23G24:C6U7_CC C 23 ? C 7 ? C 24 ? C 6 ? 1 A G 24 1_555 A C 6 1_555 A G 25 1_555 A C 5 1_555 -0.047 -2.201 3.340 -0.417 10.843 30.005 -5.803 0.017 2.418 20.134 0.774 31.864 7 CC_G24G25:C5C6_CC C 24 ? C 6 ? C 25 ? C 5 ? 1 A G 25 1_555 A C 5 1_555 A A 26 1_555 A U 4 1_555 -0.198 -1.516 3.045 -4.927 7.905 35.754 -3.342 -0.279 2.665 12.613 7.862 36.909 8 CC_G25A26:U4C5_CC C 25 ? C 5 ? C 26 ? C 4 ? 1 A A 26 1_555 A U 4 1_555 A G 27 1_555 A C 3 1_555 0.641 -2.064 3.178 6.515 10.268 26.136 -6.179 -0.003 2.310 21.300 -13.514 28.782 9 CC_A26G27:C3U4_CC C 26 ? C 4 ? C 27 ? C 3 ? 1 A G 27 1_555 A C 3 1_555 A C 28 1_555 A G 2 1_555 0.174 -1.518 3.211 2.277 12.426 33.593 -4.086 0.014 2.517 20.616 -3.778 35.825 10 CC_G27C28:G2C3_CC C 27 ? C 3 ? C 28 ? C 2 ? 1 A C 28 1_555 A G 2 1_555 A G 29 1_555 A C 1 1_555 0.099 -1.555 3.334 1.928 9.738 32.192 -4.200 0.130 2.761 17.061 -3.379 33.649 11 CC_C28G29:C1G2_CC C 28 ? C 2 ? C 29 ? C 1 ? 1 A G 29 1_555 A C 1 1_555 B C 1 1_555 B G 29 1_555 -0.096 -3.029 3.021 0.516 3.844 -3.664 -0.886 3.457 4.266 -46.228 6.208 -5.335 12 CD_G29C1:G29C1_DC C 29 ? C 1 ? D 1 ? D 29 ? 1 B C 1 1_555 B G 29 1_555 B G 2 1_555 B C 28 1_555 -0.100 -1.544 3.404 -3.418 10.643 32.087 -4.304 -0.362 2.762 18.565 5.963 33.930 13 DD_C1G2:C28G29_DD D 1 ? D 29 ? D 2 ? D 28 ? 1 B G 2 1_555 B C 28 1_555 B C 3 1_555 B G 27 1_555 -0.154 -1.522 3.225 -0.941 11.118 34.053 -3.946 0.126 2.619 18.382 1.555 35.783 14 DD_G2C3:G27C28_DD D 2 ? D 28 ? D 3 ? D 27 ? 1 B C 3 1_555 B G 27 1_555 B U 4 1_555 B A 26 1_555 -0.646 -2.059 3.198 -6.299 11.061 26.011 -6.281 0.065 2.247 22.910 13.046 28.910 15 DD_C3U4:A26G27_DD D 3 ? D 27 ? D 4 ? D 26 ? 1 B U 4 1_555 B A 26 1_555 B C 5 1_555 B G 25 1_555 0.239 -1.535 2.982 4.799 8.630 35.878 -3.402 0.178 2.567 13.692 -7.615 37.169 16 DD_U4C5:G25A26_DD D 4 ? D 26 ? D 5 ? D 25 ? 1 B C 5 1_555 B G 25 1_555 B C 6 1_555 B G 24 1_555 0.024 -2.246 3.404 -0.513 10.229 30.136 -5.846 -0.132 2.524 18.996 0.953 31.790 17 DD_C5C6:G24G25_DD D 5 ? D 25 ? D 6 ? D 24 ? 1 B C 6 1_555 B G 24 1_555 B U 7 1_555 B C 23 1_555 -0.403 -1.209 3.903 12.635 9.932 48.678 -2.193 1.474 3.415 11.686 -14.865 51.108 18 DD_C6U7:C23G24_DD D 6 ? D 24 ? D 7 ? D 23 ? 1 B U 7 1_555 B C 23 1_555 B C 8 1_555 B C 22 1_555 0.205 -0.749 3.674 8.930 10.160 45.974 -1.821 0.534 3.426 12.688 -11.152 47.819 19 DD_U7C8:C22C23_DD D 7 ? D 23 ? D 8 ? D 22 ? 1 B C 8 1_555 B C 22 1_555 B A 9 1_555 B A 21 1_555 2.849 -1.081 -1.304 -90.505 -151.183 -18.045 0.182 1.640 0.325 76.965 -46.075 -176.249 20 DD_C8A9:A21C22_DD D 8 ? D 22 ? D 9 ? D 21 ? 1 B A 9 1_555 B A 21 1_555 B U 11 1_555 B A 20 1_555 2.083 -2.439 1.032 116.989 130.030 -44.062 0.767 1.450 0.777 -66.196 59.557 -175.284 21 DD_A9U11:A20A21_DD D 9 ? D 21 ? D 11 ? D 20 ? 1 B U 11 1_555 B A 20 1_555 B A 12 1_555 B G 19 1_555 5.501 -0.819 3.327 -0.471 3.596 -10.357 -1.847 27.966 3.644 -19.165 -2.510 -10.972 22 DD_U11A12:G19A20_DD D 11 ? D 20 ? D 12 ? D 19 ? 1 B A 12 1_555 B G 19 1_555 B C 13 1_555 B G 18 1_555 0.441 -0.630 3.244 -1.905 7.219 65.330 -0.869 -0.483 3.155 6.665 1.759 65.708 23 DD_A12C13:G18G19_DD D 12 ? D 19 ? D 13 ? D 18 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1AQZ _pdbx_initial_refinement_model.details 'PDB entry 1AQZ' # _atom_sites.entry_id 1JBT _atom_sites.fract_transf_matrix[1][1] 0.016129 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001094 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009726 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024084 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K N O P S # loop_