HEADER TRANSFERASE/TRANSFERASE INHIBITOR 11-JUN-01 1JCS TITLE CRYSTAL STRUCTURE OF RAT PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH TITLE 2 THE PEPTIDE SUBSTRATE TKCVFM AND AN ANALOG OF FARNESYL DIPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN FARNESYLTRANSFERASE, ALPHA SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ALPHA SUBUNIT; COMPND 5 SYNONYM: CAAX FARNESYLTRANSFERASE ALPHA SUBUNIT; RAS PROTEINS COMPND 6 PRENYLTRANSFERASE ALPHA; FTASE-ALPHA; PRENYL-PROTEIN TRANSFERASE RAM2 COMPND 7 HOMOLOG; COMPND 8 EC: 2.5.1.-; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: PROTEIN FARNESYLTRANSFERASE, BETA SUBUNIT; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: BETA SUBUNIT; COMPND 14 SYNONYM: CAAX FARNESYLTRANSFERASE BETA SUBUNIT; RAS PROTEINS COMPND 15 PRENYLTRANSFERASE BETA; FTASE-BETA; PRENYL-PROTEIN TRANSFERASE COMPND 16 DPR1/RAM1 SUBUNIT; COMPND 17 EC: 2.5.1.-; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 3; COMPND 20 MOLECULE: SYNTHETIC HEXAPEPTIDE TKCVFM; COMPND 21 CHAIN: C; COMPND 22 ENGINEERED: YES; COMPND 23 OTHER_DETAILS: NON-SUBSTRATE INHIBITOR SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_ATCC_NUMBER: 63134; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 11 ORGANISM_COMMON: NORWAY RAT; SOURCE 12 ORGANISM_TAXID: 10116; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 16 EXPRESSION_SYSTEM_ATCC_NUMBER: 63134; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES KEYWDS FTASE, PFT, PFTASE, FT, FPT, FARNESYLTRANSFERASE, FARNESYL KEYWDS 2 TRANSFERASE, FARNESYL PROTEIN TRANSFERASE, CAAX, RAS, CANCER, KEYWDS 3 INHIBITOR, TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.B.LONG,P.J.CASEY,L.S.BEESE REVDAT 4 16-AUG-23 1JCS 1 REMARK LINK REVDAT 3 13-JUL-11 1JCS 1 VERSN REVDAT 2 24-FEB-09 1JCS 1 VERSN REVDAT 1 02-NOV-01 1JCS 0 JRNL AUTH S.B.LONG,P.J.HANCOCK,A.M.KRAL,H.W.HELLINGA,L.S.BEESE JRNL TITL THE CRYSTAL STRUCTURE OF HUMAN PROTEIN FARNESYLTRANSFERASE JRNL TITL 2 REVEALS THE BASIS FOR INHIBITION BY CAAX TETRAPEPTIDES AND JRNL TITL 3 THEIR MIMETICS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 98 12948 2001 JRNL REFN ISSN 0027-8424 JRNL PMID 11687658 JRNL DOI 10.1073/PNAS.241407898 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.B.LONG,P.J.CASEY,L.S.BEESE REMARK 1 TITL THE BASIS FOR K-RAS4B BINDING SPECIFICITY TO PROTEIN REMARK 1 TITL 2 FARNESYLTRANSFERASE REVEALED BY 2A RESOLUTION TERNARY REMARK 1 TITL 3 COMPLEX STRUCTURES REMARK 1 REF STRUCTURE V. 8 209 2000 REMARK 1 REFN ISSN 0969-2126 REMARK 1 DOI 10.1016/S0969-2126(00)00096-4 REMARK 1 REFERENCE 2 REMARK 1 AUTH H.-W.PARK,S.R.BODULURI,J.F.MOOMAW,P.J.CASEY,L.S.BEESE REMARK 1 TITL CRYSTAL STRUCTURE OF PROTEIN FARNESYLTRANSFERASE AT 2.25A REMARK 1 TITL 2 RESOLUTION REMARK 1 REF SCIENCE V. 275 1800 1997 REMARK 1 REFN ISSN 0036-8075 REMARK 1 DOI 10.1126/SCIENCE.275.5307.1800 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.7 REMARK 3 NUMBER OF REFLECTIONS : 52877 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : FROM PDB ENTRY 1D8D REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2633 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.30 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5326 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 285 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.015 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5997 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 436 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.65200 REMARK 3 B22 (A**2) : -1.65200 REMARK 3 B33 (A**2) : 8.14300 REMARK 3 B12 (A**2) : 0.29400 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.25 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.26 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.320 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.030 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.180 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.780 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.630 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PR REMARK 3 PARAMETER FILE 2 : PARAM19.SOL REMARK 3 PARAMETER FILE 3 : ACE REMARK 3 PARAMETER FILE 4 : FPP REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PR REMARK 3 TOPOLOGY FILE 2 : TOPH19.SOL REMARK 3 TOPOLOGY FILE 3 : ACE REMARK 3 TOPOLOGY FILE 4 : FPP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 1JCS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUN-01. REMARK 100 THE DEPOSITION ID IS D_1000013632. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55202 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.98 REMARK 200 R MERGE FOR SHELL (I) : 0.26900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: PDB ENTRY 1D8D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, AMMONIUM ACETATE, DTT, TRIS REMARK 280 -HCL, PH 5.7, VAPOR DIFFUSION, HANGING DROP AT 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.14167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.28333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.71250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.85417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 11.57083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT OF PROTEIN FARNESYLTRANSFERASE (FTASE) REMARK 300 IS A HETERODIMER OF ALPHA AND BETA SUBUNITS. THERE IS ONE FTASE REMARK 300 HETERODIMER PER ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 GLU A 5 REMARK 465 GLY A 6 REMARK 465 VAL A 7 REMARK 465 GLY A 8 REMARK 465 GLU A 9 REMARK 465 SER A 10 REMARK 465 ALA A 11 REMARK 465 PRO A 12 REMARK 465 GLY A 13 REMARK 465 GLY A 14 REMARK 465 GLU A 15 REMARK 465 PRO A 16 REMARK 465 GLY A 17 REMARK 465 GLN A 18 REMARK 465 PRO A 19 REMARK 465 GLU A 20 REMARK 465 GLN A 21 REMARK 465 PRO A 22 REMARK 465 PRO A 23 REMARK 465 PRO A 24 REMARK 465 PRO A 25 REMARK 465 PRO A 26 REMARK 465 PRO A 27 REMARK 465 PRO A 28 REMARK 465 PRO A 29 REMARK 465 PRO A 30 REMARK 465 ALA A 31 REMARK 465 GLN A 32 REMARK 465 GLN A 33 REMARK 465 PRO A 34 REMARK 465 GLN A 35 REMARK 465 GLU A 36 REMARK 465 GLU A 37 REMARK 465 GLU A 38 REMARK 465 MET A 39 REMARK 465 ALA A 40 REMARK 465 ALA A 41 REMARK 465 GLU A 42 REMARK 465 ALA A 43 REMARK 465 GLY A 44 REMARK 465 GLU A 45 REMARK 465 ALA A 46 REMARK 465 ALA A 47 REMARK 465 ALA A 48 REMARK 465 SER A 49 REMARK 465 PRO A 50 REMARK 465 MET A 51 REMARK 465 ASP A 52 REMARK 465 ASP A 53 REMARK 465 GLY A 54 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 SER B 6 REMARK 465 PHE B 7 REMARK 465 THR B 8 REMARK 465 TYR B 9 REMARK 465 TYR B 10 REMARK 465 CYS B 11 REMARK 465 PRO B 12 REMARK 465 PRO B 13 REMARK 465 SER B 14 REMARK 465 SER B 15 REMARK 465 SER B 16 REMARK 465 GLU B 424 REMARK 465 GLU B 425 REMARK 465 CYS B 426 REMARK 465 GLU B 427 REMARK 465 ASP B 428 REMARK 465 ALA B 429 REMARK 465 VAL B 430 REMARK 465 THR B 431 REMARK 465 SER B 432 REMARK 465 ASP B 433 REMARK 465 PRO B 434 REMARK 465 ALA B 435 REMARK 465 THR B 436 REMARK 465 ASP B 437 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 308 CA - CB - CG ANGL. DEV. = -15.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 71 0.49 -59.33 REMARK 500 ASN A 127 87.83 -157.60 REMARK 500 LEU A 215 53.75 -106.72 REMARK 500 THR A 247 -86.85 -111.94 REMARK 500 ASP A 252 107.42 -58.04 REMARK 500 PRO A 304 -81.77 -60.25 REMARK 500 HIS A 306 23.19 -146.79 REMARK 500 ASN A 325 50.32 -108.77 REMARK 500 GLN A 326 71.44 26.82 REMARK 500 GLU A 347 -60.81 -133.26 REMARK 500 ASP A 349 55.62 -157.97 REMARK 500 GLN B 74 65.63 -67.68 REMARK 500 SER B 99 31.49 -144.43 REMARK 500 ASN B 234 -169.47 -115.12 REMARK 500 MET B 329 48.32 -81.22 REMARK 500 PRO B 421 131.11 -38.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 297 OD1 REMARK 620 2 ASP B 297 OD2 55.1 REMARK 620 3 CYS B 299 SG 88.3 106.3 REMARK 620 4 HIS B 362 NE2 83.0 117.6 117.2 REMARK 620 5 CYS C 3 SG 144.6 92.5 117.2 103.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FII B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 3002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 3003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN C OF SYNTHETIC REMARK 800 HEXAPEPTIDE TKCVFM REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1D8D RELATED DB: PDB REMARK 900 PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH A K-RAS4B PEPTIDE REMARK 900 SUBSTRATE AND FARNESYL DIPHOSPHATE ANALOG REMARK 900 RELATED ID: 1FT1 RELATED DB: PDB REMARK 900 UNLIGANDED PROTEIN FARENESYLTRANSFERASE REMARK 900 RELATED ID: 1JCQ RELATED DB: PDB REMARK 900 HUMAN PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH FARNESYL REMARK 900 DIPHOSPHATE AND THE PEPTIDOMIMETIC INHIBITOR L-739,750 REMARK 900 RELATED ID: 1JCR RELATED DB: PDB REMARK 900 RAT PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH THE NON-SUBSTRATE REMARK 900 TETRAPEPTIDE INHIBITOR CVFM AND FARNESYL DIPHOSPHATE SUBSTRATE DBREF 1JCS A 1 377 UNP Q04631 PFTA_RAT 1 377 DBREF 1JCS B 1 437 UNP Q02293 PFTB_RAT 1 437 DBREF 1JCS C 1 6 PDB 1JCS 1JCS 1 6 SEQRES 1 A 377 MET ALA ALA THR GLU GLY VAL GLY GLU SER ALA PRO GLY SEQRES 2 A 377 GLY GLU PRO GLY GLN PRO GLU GLN PRO PRO PRO PRO PRO SEQRES 3 A 377 PRO PRO PRO PRO ALA GLN GLN PRO GLN GLU GLU GLU MET SEQRES 4 A 377 ALA ALA GLU ALA GLY GLU ALA ALA ALA SER PRO MET ASP SEQRES 5 A 377 ASP GLY PHE LEU SER LEU ASP SER PRO THR TYR VAL LEU SEQRES 6 A 377 TYR ARG ASP ARG ALA GLU TRP ALA ASP ILE ASP PRO VAL SEQRES 7 A 377 PRO GLN ASN ASP GLY PRO SER PRO VAL VAL GLN ILE ILE SEQRES 8 A 377 TYR SER GLU LYS PHE ARG ASP VAL TYR ASP TYR PHE ARG SEQRES 9 A 377 ALA VAL LEU GLN ARG ASP GLU ARG SER GLU ARG ALA PHE SEQRES 10 A 377 LYS LEU THR ARG ASP ALA ILE GLU LEU ASN ALA ALA ASN SEQRES 11 A 377 TYR THR VAL TRP HIS PHE ARG ARG VAL LEU LEU ARG SER SEQRES 12 A 377 LEU GLN LYS ASP LEU GLN GLU GLU MET ASN TYR ILE ILE SEQRES 13 A 377 ALA ILE ILE GLU GLU GLN PRO LYS ASN TYR GLN VAL TRP SEQRES 14 A 377 HIS HIS ARG ARG VAL LEU VAL GLU TRP LEU LYS ASP PRO SEQRES 15 A 377 SER GLN GLU LEU GLU PHE ILE ALA ASP ILE LEU ASN GLN SEQRES 16 A 377 ASP ALA LYS ASN TYR HIS ALA TRP GLN HIS ARG GLN TRP SEQRES 17 A 377 VAL ILE GLN GLU PHE ARG LEU TRP ASP ASN GLU LEU GLN SEQRES 18 A 377 TYR VAL ASP GLN LEU LEU LYS GLU ASP VAL ARG ASN ASN SEQRES 19 A 377 SER VAL TRP ASN GLN ARG HIS PHE VAL ILE SER ASN THR SEQRES 20 A 377 THR GLY TYR SER ASP ARG ALA VAL LEU GLU ARG GLU VAL SEQRES 21 A 377 GLN TYR THR LEU GLU MET ILE LYS LEU VAL PRO HIS ASN SEQRES 22 A 377 GLU SER ALA TRP ASN TYR LEU LYS GLY ILE LEU GLN ASP SEQRES 23 A 377 ARG GLY LEU SER ARG TYR PRO ASN LEU LEU ASN GLN LEU SEQRES 24 A 377 LEU ASP LEU GLN PRO SER HIS SER SER PRO TYR LEU ILE SEQRES 25 A 377 ALA PHE LEU VAL ASP ILE TYR GLU ASP MET LEU GLU ASN SEQRES 26 A 377 GLN CYS ASP ASN LYS GLU ASP ILE LEU ASN LYS ALA LEU SEQRES 27 A 377 GLU LEU CYS GLU ILE LEU ALA LYS GLU LYS ASP THR ILE SEQRES 28 A 377 ARG LYS GLU TYR TRP ARG TYR ILE GLY ARG SER LEU GLN SEQRES 29 A 377 SER LYS HIS SER ARG GLU SER ASP ILE PRO ALA SER VAL SEQRES 1 B 437 MET ALA SER SER SER SER PHE THR TYR TYR CYS PRO PRO SEQRES 2 B 437 SER SER SER PRO VAL TRP SER GLU PRO LEU TYR SER LEU SEQRES 3 B 437 ARG PRO GLU HIS ALA ARG GLU ARG LEU GLN ASP ASP SER SEQRES 4 B 437 VAL GLU THR VAL THR SER ILE GLU GLN ALA LYS VAL GLU SEQRES 5 B 437 GLU LYS ILE GLN GLU VAL PHE SER SER TYR LYS PHE ASN SEQRES 6 B 437 HIS LEU VAL PRO ARG LEU VAL LEU GLN ARG GLU LYS HIS SEQRES 7 B 437 PHE HIS TYR LEU LYS ARG GLY LEU ARG GLN LEU THR ASP SEQRES 8 B 437 ALA TYR GLU CYS LEU ASP ALA SER ARG PRO TRP LEU CYS SEQRES 9 B 437 TYR TRP ILE LEU HIS SER LEU GLU LEU LEU ASP GLU PRO SEQRES 10 B 437 ILE PRO GLN ILE VAL ALA THR ASP VAL CYS GLN PHE LEU SEQRES 11 B 437 GLU LEU CYS GLN SER PRO ASP GLY GLY PHE GLY GLY GLY SEQRES 12 B 437 PRO GLY GLN TYR PRO HIS LEU ALA PRO THR TYR ALA ALA SEQRES 13 B 437 VAL ASN ALA LEU CYS ILE ILE GLY THR GLU GLU ALA TYR SEQRES 14 B 437 ASN VAL ILE ASN ARG GLU LYS LEU LEU GLN TYR LEU TYR SEQRES 15 B 437 SER LEU LYS GLN PRO ASP GLY SER PHE LEU MET HIS VAL SEQRES 16 B 437 GLY GLY GLU VAL ASP VAL ARG SER ALA TYR CYS ALA ALA SEQRES 17 B 437 SER VAL ALA SER LEU THR ASN ILE ILE THR PRO ASP LEU SEQRES 18 B 437 PHE GLU GLY THR ALA GLU TRP ILE ALA ARG CYS GLN ASN SEQRES 19 B 437 TRP GLU GLY GLY ILE GLY GLY VAL PRO GLY MET GLU ALA SEQRES 20 B 437 HIS GLY GLY TYR THR PHE CYS GLY LEU ALA ALA LEU VAL SEQRES 21 B 437 ILE LEU LYS LYS GLU ARG SER LEU ASN LEU LYS SER LEU SEQRES 22 B 437 LEU GLN TRP VAL THR SER ARG GLN MET ARG PHE GLU GLY SEQRES 23 B 437 GLY PHE GLN GLY ARG CYS ASN LYS LEU VAL ASP GLY CYS SEQRES 24 B 437 TYR SER PHE TRP GLN ALA GLY LEU LEU PRO LEU LEU HIS SEQRES 25 B 437 ARG ALA LEU HIS ALA GLN GLY ASP PRO ALA LEU SER MET SEQRES 26 B 437 SER HIS TRP MET PHE HIS GLN GLN ALA LEU GLN GLU TYR SEQRES 27 B 437 ILE LEU MET CYS CYS GLN CYS PRO ALA GLY GLY LEU LEU SEQRES 28 B 437 ASP LYS PRO GLY LYS SER ARG ASP PHE TYR HIS THR CYS SEQRES 29 B 437 TYR CYS LEU SER GLY LEU SER ILE ALA GLN HIS PHE GLY SEQRES 30 B 437 SER GLY ALA MET LEU HIS ASP VAL VAL MET GLY VAL PRO SEQRES 31 B 437 GLU ASN VAL LEU GLN PRO THR HIS PRO VAL TYR ASN ILE SEQRES 32 B 437 GLY PRO ASP LYS VAL ILE GLN ALA THR THR HIS PHE LEU SEQRES 33 B 437 GLN LYS PRO VAL PRO GLY PHE GLU GLU CYS GLU ASP ALA SEQRES 34 B 437 VAL THR SER ASP PRO ALA THR ASP SEQRES 1 C 6 THR LYS CYS VAL PHE MET HET ZN B1001 1 HET FII B1002 24 HET ACY B3002 4 HET ACY B3003 4 HETNAM ZN ZINC ION HETNAM FII [(3,7,11-TRIMETHYL-DODECA-2,6,10-TRIENYLOXYCARBAMOYL)- HETNAM 2 FII METHYL]-PHOSPHONIC ACID HETNAM ACY ACETIC ACID HETSYN FII FPP ANALOG FORMUL 4 ZN ZN 2+ FORMUL 5 FII C17 H30 N O5 P FORMUL 6 ACY 2(C2 H4 O2) FORMUL 8 HOH *436(H2 O) HELIX 1 1 LEU A 65 ARG A 69 5 5 HELIX 2 2 ARG A 69 ALA A 73 5 5 HELIX 3 3 SER A 93 ASP A 110 1 18 HELIX 4 4 SER A 113 ASN A 127 1 15 HELIX 5 5 ASN A 130 LEU A 144 1 15 HELIX 6 6 ASP A 147 GLN A 162 1 16 HELIX 7 7 ASN A 165 LYS A 180 1 16 HELIX 8 8 GLN A 184 ASP A 196 1 13 HELIX 9 9 ASN A 199 ARG A 214 1 16 HELIX 10 10 ASN A 218 ASP A 230 1 13 HELIX 11 11 ASN A 233 THR A 247 1 15 HELIX 12 12 ASP A 252 VAL A 270 1 19 HELIX 13 13 ASN A 273 GLN A 285 1 13 HELIX 14 14 GLY A 288 ARG A 291 5 4 HELIX 15 15 TYR A 292 ASP A 301 1 10 HELIX 16 16 LEU A 302 SER A 307 1 6 HELIX 17 17 SER A 308 ASN A 325 1 18 HELIX 18 18 ASN A 329 GLU A 347 1 19 HELIX 19 19 ASP A 349 ILE A 351 5 3 HELIX 20 20 ARG A 352 SER A 368 1 17 HELIX 21 21 ARG A 369 ILE A 373 5 5 HELIX 22 22 LEU B 23 ARG B 27 5 5 HELIX 23 23 ARG B 27 ARG B 34 5 8 HELIX 24 24 THR B 42 HIS B 66 1 25 HELIX 25 25 GLN B 74 LEU B 86 1 13 HELIX 26 26 THR B 90 ASP B 97 5 8 HELIX 27 27 SER B 99 LEU B 114 1 16 HELIX 28 28 PRO B 119 GLN B 134 1 16 HELIX 29 29 HIS B 149 GLY B 164 1 16 HELIX 30 30 THR B 165 ILE B 172 1 8 HELIX 31 31 ASN B 173 LYS B 185 1 13 HELIX 32 32 ASP B 200 THR B 214 1 15 HELIX 33 33 GLY B 224 CYS B 232 1 9 HELIX 34 34 HIS B 248 LYS B 263 1 16 HELIX 35 35 LYS B 264 LEU B 268 5 5 HELIX 36 36 ASN B 269 SER B 279 1 11 HELIX 37 37 CYS B 299 GLN B 304 1 6 HELIX 38 38 GLY B 306 GLN B 318 1 13 HELIX 39 39 HIS B 331 CYS B 343 1 13 HELIX 40 40 ASP B 359 GLN B 374 1 16 HELIX 41 41 VAL B 389 VAL B 393 5 5 HELIX 42 42 GLY B 404 LEU B 416 1 13 SHEET 1 A 2 GLN A 89 ILE A 90 0 SHEET 2 A 2 GLN B 88 LEU B 89 1 N LEU B 89 O GLN A 89 SHEET 1 B 2 HIS B 375 SER B 378 0 SHEET 2 B 2 MET B 381 ASP B 384 -1 O MET B 381 N SER B 378 LINK OD1 ASP B 297 ZN ZN B1001 1555 1555 2.55 LINK OD2 ASP B 297 ZN ZN B1001 1555 1555 2.08 LINK SG CYS B 299 ZN ZN B1001 1555 1555 2.21 LINK NE2 HIS B 362 ZN ZN B1001 1555 1555 2.17 LINK ZN ZN B1001 SG CYS C 3 1555 1555 2.35 SITE 1 AC1 4 ASP B 297 CYS B 299 HIS B 362 CYS C 3 SITE 1 AC2 19 TYR A 166 TYR A 200 TYR B 205 HIS B 248 SITE 2 AC2 19 GLY B 250 CYS B 254 ARG B 291 LYS B 294 SITE 3 AC2 19 TYR B 300 TRP B 303 TYR B 361 HOH B1162 SITE 4 AC2 19 HOH B1164 HOH B1165 HOH B1168 HOH B1198 SITE 5 AC2 19 VAL C 4 PHE C 5 HOH C1253 SITE 1 AC3 5 LEU B 89 THR B 90 TYR B 93 HOH B1183 SITE 2 AC3 5 ACY B3003 SITE 1 AC4 5 TYR B 81 TYR B 93 ARG B 358 ASP B 359 SITE 2 AC4 5 ACY B3002 SITE 1 AC5 24 LYS A 164 TYR A 166 GLN A 167 HOH A1167 SITE 2 AC5 24 HOH A1310 ALA B 98 SER B 99 TRP B 102 SITE 3 AC5 24 TRP B 106 ARG B 202 ASP B 297 LYS B 356 SITE 4 AC5 24 TYR B 361 HIS B 362 ZN B1001 FII B1002 SITE 5 AC5 24 HOH B1163 HOH C1184 HOH C1246 HOH C1253 SITE 6 AC5 24 HOH C1317 HOH C1318 HOH C1412 HOH C1568 CRYST1 170.921 170.921 69.425 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005851 0.003378 0.000000 0.00000 SCALE2 0.000000 0.006756 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014404 0.00000