data_1JD8 # _entry.id 1JD8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.299 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1JD8 RCSB RCSB013646 WWPDB D_1000013646 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1IM7 '1IM7 contains the parent peptide' unspecified PDB 1J8N '1J8N contains the beta3-ser analogue peptide (HSER)' unspecified PDB 1J8Z '1J8Z contains the beta3-Cys analogue peptide (HCYS)' unspecified PDB 1J9V '1J9V contains the lactam analogue peptide DabD' unspecified PDB 1JAR '1JAR contains the lactam analogue peptidev DDab' unspecified PDB 1JC8 '1JC8 contains the lactam analogue peptide DDap' unspecified PDB 1JAA '1JAA contains the lactam analogue peptide DapE' unspecified PDB 1JCP '1JCP contains the lactam analogue peptide EDap' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1JD8 _pdbx_database_status.recvd_initial_deposition_date 2001-06-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Phan Chan Du, A.' 1 ? 'Limal, D.' 2 ? 'Semetey, V.' 3 ? 'Dali, H.' 4 ? 'Jolivet, M.' 5 ? 'Desgranges, C.' 6 ? 'Cung, M.T.' 7 ? 'Briand, J.P.' 8 ? 'Petit, M.C.' 9 ? 'Muller, S.' 10 ? # _citation.id primary _citation.title ;Structural and immunological characterisation of heteroclitic peptide analogues corresponding to the 600-612 region of the HIV envelope gp41 glycoprotein. ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 323 _citation.page_first 503 _citation.page_last 521 _citation.year 2002 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12381305 _citation.pdbx_database_id_DOI '10.1016/S0022-2836(02)00701-5' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Du, A.P.' 1 ? primary 'Limal, D.' 2 ? primary 'Semetey, V.' 3 ? primary 'Dali, H.' 4 ? primary 'Jolivet, M.' 5 ? primary 'Desgranges, C.' 6 ? primary 'Cung, M.T.' 7 ? primary 'Briand, J.P.' 8 ? primary 'Petit, M.C.' 9 ? primary 'Muller, S.' 10 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Transmembrane protein gp41' _entity.formula_weight 1373.556 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'TM, Glycoprotein 41, gp41' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)IWG(DPP)SGKLIDTTA' _entity_poly.pdbx_seq_one_letter_code_can XIWGASGKLIDTTA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 ILE n 1 3 TRP n 1 4 GLY n 1 5 DPP n 1 6 SER n 1 7 GLY n 1 8 LYS n 1 9 LEU n 1 10 ILE n 1 11 ASP n 1 12 THR n 1 13 THR n 1 14 ALA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 14 _pdbx_entity_src_syn.organism_scientific 'Human immunodeficiency virus 1' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 11676 _pdbx_entity_src_syn.details 'The parent peptide (IWGCSGKLICTTA) occurs naturally in HIV gp41' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ENV_HV1BR _struct_ref.pdbx_db_accession P03377 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code IWGCSGKLICTTA _struct_ref.pdbx_align_begin 600 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1JD8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 14 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P03377 _struct_ref_seq.db_align_beg 600 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 612 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 14 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1JD8 ACE A 1 ? UNP P03377 ? ? acetylation 1 1 1 1JD8 DPP A 5 ? UNP P03377 CYS 603 'engineered mutation' 5 2 1 1JD8 ASP A 11 ? UNP P03377 CYS 609 'engineered mutation' 11 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DPP 'L-peptide linking' n 'DIAMINOPROPANOIC ACID' ? 'C3 H8 N2 O2' 104.108 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 '2D NOESY' 2 1 1 DQF-COSY 3 1 1 TOCSY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH ? _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K _pdbx_nmr_exptl_sample_conditions.label ? _pdbx_nmr_exptl_sample_conditions.pH_units ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units ? # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '4mM peptide in 500 ul solvent' _pdbx_nmr_sample_details.solvent_system '100% DMSO-D6' _pdbx_nmr_sample_details.label ? _pdbx_nmr_sample_details.type ? _pdbx_nmr_sample_details.details ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Bruker Avance 400 2 ? Bruker Avance 600 # _pdbx_nmr_refine.entry_id 1JD8 _pdbx_nmr_refine.method 'torsion dynamics, molecular dynamics, energy minimization' _pdbx_nmr_refine.details ;50 initial structures were generated using DYANA software, followed by 500 steps restrained minimization.Then using DISCOVER 3, 35 ps MD and 750 steps conjugate gradient EM. ; _pdbx_nmr_refine.software_ordinal 4 # _pdbx_nmr_details.entry_id 1JD8 _pdbx_nmr_details.text ;Classical 2D homonuclear NMR technques were used. Different NOESY with different mixing time (from 80ms to 800ms) were recorded in order to determine the best conditions without spin diffusion. ; # _pdbx_nmr_ensemble.entry_id 1JD8 _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1JD8 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal XWINNMR 2.6 collection 'Bruker GMBH' 1 XWINNMR 2.6 processing 'Bruker GMBH' 2 XEASY 1.2 'data analysis' 'Bartels C., Billeter M., Guentert P. and Wuethrich K. (1995) J.Biomol. NMR, 5, 1-10' 3 DYANA 1.5 refinement 'Guentert P., Mumenthaler C. and Wuethrich K. (1997) J. Mol. Biol., 273,283-298' 4 DISCOVER 3 refinement 'MSI, San Diego' 5 # _exptl.entry_id 1JD8 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1JD8 _struct.title 'Solution structure of lactam analogue DapD of HIV gp41 600-612 loop' _struct.pdbx_descriptor 'Transmembrane protein gp41' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1JD8 _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'cyclic peptide, gp41, HIV, lactam bond, pseudopeptide, Viral protein' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ACE 1 C ? ? ? 1_555 A ILE 2 N ? ? A ACE 1 A ILE 2 1_555 ? ? ? ? ? ? ? 1.341 ? covale2 covale ? ? A GLY 4 C ? ? ? 1_555 A DPP 5 N ? ? A GLY 4 A DPP 5 1_555 ? ? ? ? ? ? ? 1.347 ? covale3 covale ? ? A DPP 5 C ? ? ? 1_555 A SER 6 N ? ? A DPP 5 A SER 6 1_555 ? ? ? ? ? ? ? 1.349 ? covale4 covale ? ? A DPP 5 NG ? ? ? 1_555 A ASP 11 CG ? ? A DPP 5 A ASP 11 1_555 ? ? ? ? ? ? ? 1.343 sing # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1JD8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1JD8 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 1 1 ACE ACE A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 TRP 3 3 3 TRP TRP A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 DPP 5 5 5 DPP DNP A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 ALA 14 14 14 ALA ALA A . n # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id DPP _pdbx_struct_mod_residue.label_seq_id 5 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id DPP _pdbx_struct_mod_residue.auth_seq_id 5 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id SER _pdbx_struct_mod_residue.details AMINOSERINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 380 ? 1 MORE -1 ? 1 'SSA (A^2)' 1540 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-07-01 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-10-03 5 'Structure model' 2 0 2018-10-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' Advisory 7 5 'Structure model' 'Atomic model' 8 5 'Structure model' 'Data collection' 9 5 'Structure model' 'Database references' 10 5 'Structure model' 'Derived calculations' 11 5 'Structure model' 'Experimental preparation' 12 5 'Structure model' 'Non-polymer description' 13 5 'Structure model' Other 14 5 'Structure model' 'Polymer sequence' 15 5 'Structure model' 'Refinement description' 16 5 'Structure model' 'Source and taxonomy' 17 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_PDB_caveat 2 4 'Structure model' pdbx_struct_assembly 3 4 'Structure model' pdbx_struct_assembly_prop 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' pdbx_validate_polymer_linkage 6 5 'Structure model' atom_site 7 5 'Structure model' cell 8 5 'Structure model' chem_comp 9 5 'Structure model' database_PDB_caveat 10 5 'Structure model' diffrn 11 5 'Structure model' diffrn_radiation 12 5 'Structure model' diffrn_radiation_wavelength 13 5 'Structure model' entity 14 5 'Structure model' entity_name_com 15 5 'Structure model' entity_poly 16 5 'Structure model' entity_poly_seq 17 5 'Structure model' pdbx_entity_src_syn 18 5 'Structure model' pdbx_nmr_details 19 5 'Structure model' pdbx_nmr_exptl_sample_conditions 20 5 'Structure model' pdbx_nmr_refine 21 5 'Structure model' pdbx_nmr_sample_details 22 5 'Structure model' pdbx_nmr_software 23 5 'Structure model' pdbx_poly_seq_scheme 24 5 'Structure model' pdbx_struct_mod_residue 25 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 26 5 'Structure model' pdbx_validate_chiral 27 5 'Structure model' pdbx_validate_close_contact 28 5 'Structure model' pdbx_validate_torsion 29 5 'Structure model' struct 30 5 'Structure model' struct_conn 31 5 'Structure model' struct_ref 32 5 'Structure model' struct_ref_seq 33 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_atom_site.Cartn_x' 2 5 'Structure model' '_atom_site.Cartn_y' 3 5 'Structure model' '_atom_site.Cartn_z' 4 5 'Structure model' '_atom_site.auth_atom_id' 5 5 'Structure model' '_atom_site.auth_comp_id' 6 5 'Structure model' '_atom_site.label_atom_id' 7 5 'Structure model' '_atom_site.label_comp_id' 8 5 'Structure model' '_atom_site.type_symbol' 9 5 'Structure model' '_chem_comp.formula' 10 5 'Structure model' '_chem_comp.formula_weight' 11 5 'Structure model' '_chem_comp.id' 12 5 'Structure model' '_chem_comp.mon_nstd_flag' 13 5 'Structure model' '_chem_comp.name' 14 5 'Structure model' '_chem_comp.type' 15 5 'Structure model' '_entity.formula_weight' 16 5 'Structure model' '_entity.pdbx_description' 17 5 'Structure model' '_entity_poly.pdbx_seq_one_letter_code' 18 5 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 19 5 'Structure model' '_entity_poly_seq.mon_id' 20 5 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 21 5 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 22 5 'Structure model' '_pdbx_entity_src_syn.pdbx_beg_seq_num' 23 5 'Structure model' '_pdbx_entity_src_syn.pdbx_end_seq_num' 24 5 'Structure model' '_pdbx_nmr_details.text' 25 5 'Structure model' '_pdbx_nmr_exptl_sample_conditions.pressure' 26 5 'Structure model' '_pdbx_nmr_exptl_sample_conditions.pressure_units' 27 5 'Structure model' '_pdbx_nmr_refine.method' 28 5 'Structure model' '_pdbx_nmr_refine.software_ordinal' 29 5 'Structure model' '_pdbx_nmr_sample_details.contents' 30 5 'Structure model' '_pdbx_nmr_software.authors' 31 5 'Structure model' '_pdbx_poly_seq_scheme.mon_id' 32 5 'Structure model' '_pdbx_poly_seq_scheme.pdb_mon_id' 33 5 'Structure model' '_pdbx_struct_mod_residue.auth_comp_id' 34 5 'Structure model' '_pdbx_struct_mod_residue.label_comp_id' 35 5 'Structure model' '_struct.pdbx_descriptor' 36 5 'Structure model' '_struct.title' 37 5 'Structure model' '_struct_ref.db_code' 38 5 'Structure model' '_struct_ref.db_name' 39 5 'Structure model' '_struct_ref.pdbx_align_begin' 40 5 'Structure model' '_struct_ref.pdbx_db_accession' 41 5 'Structure model' '_struct_ref.pdbx_seq_one_letter_code' 42 5 'Structure model' '_struct_ref_seq.db_align_beg' 43 5 'Structure model' '_struct_ref_seq.db_align_end' 44 5 'Structure model' '_struct_ref_seq.pdbx_auth_seq_align_beg' 45 5 'Structure model' '_struct_ref_seq.pdbx_db_accession' 46 5 'Structure model' '_struct_ref_seq.seq_align_beg' # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.370 1.229 0.141 0.019 N 2 2 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.371 1.229 0.142 0.019 N 3 3 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.367 1.229 0.138 0.019 N 4 4 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.370 1.229 0.141 0.019 N 5 5 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.370 1.229 0.141 0.019 N 6 6 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.368 1.229 0.139 0.019 N 7 7 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.374 1.229 0.145 0.019 N 8 8 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.370 1.229 0.141 0.019 N 9 9 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.369 1.229 0.140 0.019 N 10 10 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.374 1.229 0.145 0.019 N 11 11 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.374 1.229 0.145 0.019 N 12 12 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.370 1.229 0.141 0.019 N 13 13 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.372 1.229 0.143 0.019 N 14 14 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.370 1.229 0.141 0.019 N 15 15 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.370 1.229 0.141 0.019 N 16 16 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.370 1.229 0.141 0.019 N 17 17 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.374 1.229 0.145 0.019 N 18 18 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.370 1.229 0.141 0.019 N 19 19 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.369 1.229 0.140 0.019 N 20 20 C A ALA 14 ? ? OXT A ALA 14 ? ? 1.372 1.229 0.143 0.019 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 6 ? ? -163.20 115.19 2 1 LYS A 8 ? ? -158.03 -84.61 3 1 THR A 13 ? ? -100.20 79.82 4 2 SER A 6 ? ? -162.16 119.04 5 2 LYS A 8 ? ? -152.98 -85.88 6 3 SER A 6 ? ? -162.34 113.30 7 3 LYS A 8 ? ? -160.73 -82.29 8 3 THR A 12 ? ? -56.00 108.48 9 4 LYS A 8 ? ? -153.47 -94.93 10 4 THR A 12 ? ? -57.84 102.93 11 5 SER A 6 ? ? -162.14 108.37 12 5 LYS A 8 ? ? -154.53 -92.03 13 5 THR A 12 ? ? -69.39 99.48 14 6 SER A 6 ? ? -166.22 113.93 15 6 LYS A 8 ? ? -158.46 -85.48 16 6 THR A 12 ? ? -56.88 108.04 17 7 LYS A 8 ? ? -159.91 -90.32 18 8 LYS A 8 ? ? -159.90 -95.03 19 9 LYS A 8 ? ? -155.06 -90.62 20 10 SER A 6 ? ? -162.62 111.99 21 10 LYS A 8 ? ? -150.87 -92.36 22 10 THR A 12 ? ? -59.46 105.72 23 11 DPP A 5 ? ? -151.48 82.64 24 11 SER A 6 ? ? -167.61 113.24 25 11 LYS A 8 ? ? -148.06 -90.85 26 12 LYS A 8 ? ? -157.75 -85.81 27 12 THR A 13 ? ? -93.43 -65.04 28 13 LYS A 8 ? ? -155.57 -89.19 29 13 THR A 13 ? ? -97.53 -69.42 30 14 LYS A 8 ? ? -156.20 -89.53 31 14 THR A 13 ? ? -130.65 -73.36 32 15 LYS A 8 ? ? -156.30 -99.34 33 16 LYS A 8 ? ? -152.49 -93.57 34 16 THR A 12 ? ? -58.51 104.37 35 16 THR A 13 ? ? -140.87 -72.72 36 17 LYS A 8 ? ? -159.50 -91.36 37 18 LYS A 8 ? ? -161.90 -91.65 38 19 LYS A 8 ? ? -158.81 -94.38 39 19 THR A 13 ? ? -142.33 -73.09 40 20 SER A 6 ? ? -161.00 105.33 41 20 LYS A 8 ? ? -154.29 -92.43 42 20 THR A 13 ? ? -132.04 -77.08 #