HEADER STRUCTURAL GENOMICS 15-JUN-01 1JE3 TITLE SOLUTION STRUCTURE OF EC005 FROM ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL 8.6 KDA PROTEIN IN AMYA-FLIE INTERGENIC COMPND 3 REGION; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: EC005; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: YEDF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS MIXED ALPHA-BETA STRUCTURE, STRUCTURAL GENOMICS EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.YEE,P.GUTIERREZ,G.KOZLOV,A.DENISOV,K.GEHRING,C.ARROWSMITH REVDAT 5 22-MAY-24 1JE3 1 REMARK REVDAT 4 23-FEB-22 1JE3 1 REMARK SEQADV REVDAT 3 24-FEB-09 1JE3 1 VERSN REVDAT 2 01-APR-03 1JE3 1 JRNL REVDAT 1 06-MAR-02 1JE3 0 JRNL AUTH A.YEE,X.CHANG,A.PINEDA-LUCENA,B.WU,A.SEMESI,B.LE,T.RAMELOT, JRNL AUTH 2 G.M.LEE,S.BHATTACHARYYA,P.GUTIERREZ,A.DENISOV,C.H.LEE, JRNL AUTH 3 J.R.CORT,G.KOZLOV,J.LIAO,G.FINAK,L.CHEN,D.WISHART,W.LEE, JRNL AUTH 4 L.P.MCINTOSH,K.GEHRING,M.A.KENNEDY,A.M.EDWARDS, JRNL AUTH 5 C.H.ARROWSMITH JRNL TITL AN NMR APPROACH TO STRUCTURAL PROTEOMICS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 99 1825 2002 JRNL REFN ISSN 0027-8424 JRNL PMID 11854485 JRNL DOI 10.1073/PNAS.042684599 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.1, CNS 0.9 REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES WERE BASED ON 619 NON-REDUNDANT NOE-DERIVED REMARK 3 DISTANCE CONSTRAINTS, REMARK 3 85 DIHEDRAL ANGLE RESTRAINTS AND 32 HYDROGEN BONDS. REMARK 4 REMARK 4 1JE3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-01. REMARK 100 THE DEPOSITION ID IS D_1000013669. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 0.3 M REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM EC005 U-15N; 50MM PHOSPHATE REMARK 210 BUFFER; 0.15 M NACL; 1 MM DTT; 1 REMARK 210 MM NAN3.; 2MM EC005 U-15N, 13C; REMARK 210 50MM PHOSPHATE BUFFER; 0.15 M REMARK 210 NACL; 1 MM 2MM EC005 U-15N; 50MM REMARK 210 PHOSPHATE BUFFER; 0.15 M NACL; 1 REMARK 210 MM DTT; 1 MM NAN3.DTT; 1 MM REMARK 210 NAN3.; 2MM EC005 UNLABELED; 50MM REMARK 210 PHOSPHATE BUFFER; 0.15 M NACL; 1 REMARK 210 MM DTT; 1 MM NAN3.; 2MM EC005 REMARK 210 UNLABELED; 50MM PHOSPHATE BUFFER; REMARK 210 0.15 M NACL; 1 MM DTT; 1 MM REMARK 210 NAN3. REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : GIFA 4.31, XEASY 1.3.13, ARIA REMARK 210 0.9 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING STANDARD TRIPLE REMARK 210 -RESONANCE NMR EXPERIMENTS. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 5 45.26 -94.37 REMARK 500 1 PRO A 26 95.13 -56.44 REMARK 500 1 ASP A 27 -76.03 -61.27 REMARK 500 1 LEU A 30 77.44 -109.60 REMARK 500 1 ASP A 31 67.62 -103.64 REMARK 500 1 MET A 32 -107.68 -136.49 REMARK 500 1 PRO A 38 89.26 -61.06 REMARK 500 1 TYR A 39 -53.83 -140.37 REMARK 500 1 PRO A 40 -72.62 -70.27 REMARK 500 1 ALA A 41 -3.05 -55.89 REMARK 500 1 LEU A 51 152.13 -46.31 REMARK 500 1 LYS A 53 45.73 -85.44 REMARK 500 1 ASN A 69 -74.92 -72.56 REMARK 500 1 TYR A 79 -154.83 -92.05 REMARK 500 1 THR A 80 -64.70 -90.79 REMARK 500 1 ASP A 87 -79.69 -123.96 REMARK 500 2 HIS A 6 -168.18 -116.18 REMARK 500 2 HIS A 8 -67.95 -139.85 REMARK 500 2 PRO A 26 100.02 -53.18 REMARK 500 2 ASP A 27 -81.64 -64.53 REMARK 500 2 ASP A 31 69.50 -103.48 REMARK 500 2 MET A 32 -111.85 -136.85 REMARK 500 2 ALA A 41 0.01 -58.02 REMARK 500 2 LEU A 51 155.92 -46.44 REMARK 500 2 LYS A 52 -91.28 -126.63 REMARK 500 2 GLN A 65 -159.99 -127.35 REMARK 500 2 ASN A 69 -73.65 -72.87 REMARK 500 2 ASP A 87 -138.25 -129.29 REMARK 500 3 HIS A 6 -68.78 -140.07 REMARK 500 3 PRO A 26 98.62 -60.43 REMARK 500 3 ASP A 27 -78.13 -64.20 REMARK 500 3 ASP A 31 66.64 -103.52 REMARK 500 3 MET A 32 -106.40 -137.06 REMARK 500 3 PRO A 36 91.55 -53.50 REMARK 500 3 PRO A 40 -129.39 -92.46 REMARK 500 3 ALA A 41 -4.16 -57.88 REMARK 500 3 LEU A 51 161.76 -48.60 REMARK 500 3 LYS A 52 -95.58 -131.70 REMARK 500 3 LYS A 53 -14.75 -140.51 REMARK 500 3 ASN A 69 -75.67 -72.68 REMARK 500 3 TYR A 79 -151.89 -88.06 REMARK 500 3 THR A 80 -75.34 -93.33 REMARK 500 3 PRO A 89 43.23 -90.90 REMARK 500 4 SER A 4 -75.51 -113.02 REMARK 500 4 SER A 12 -79.03 -116.44 REMARK 500 4 ILE A 24 -72.16 -89.04 REMARK 500 4 PRO A 26 93.55 -54.34 REMARK 500 4 ASP A 27 -77.07 -72.71 REMARK 500 4 ASP A 31 67.06 -103.52 REMARK 500 4 MET A 32 -109.85 -136.94 REMARK 500 REMARK 500 THIS ENTRY HAS 301 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1JE3 A 21 97 UNP P0AA31 YEDF_ECOLI 1 77 SEQADV 1JE3 MET A 1 UNP P0AA31 EXPRESSION TAG SEQADV 1JE3 GLY A 2 UNP P0AA31 EXPRESSION TAG SEQADV 1JE3 SER A 3 UNP P0AA31 EXPRESSION TAG SEQADV 1JE3 SER A 4 UNP P0AA31 EXPRESSION TAG SEQADV 1JE3 HIS A 5 UNP P0AA31 EXPRESSION TAG SEQADV 1JE3 HIS A 6 UNP P0AA31 EXPRESSION TAG SEQADV 1JE3 HIS A 7 UNP P0AA31 EXPRESSION TAG SEQADV 1JE3 HIS A 8 UNP P0AA31 EXPRESSION TAG SEQADV 1JE3 HIS A 9 UNP P0AA31 EXPRESSION TAG SEQADV 1JE3 HIS A 10 UNP P0AA31 EXPRESSION TAG SEQADV 1JE3 SER A 11 UNP P0AA31 EXPRESSION TAG SEQADV 1JE3 SER A 12 UNP P0AA31 EXPRESSION TAG SEQADV 1JE3 GLY A 13 UNP P0AA31 EXPRESSION TAG SEQADV 1JE3 LEU A 14 UNP P0AA31 EXPRESSION TAG SEQADV 1JE3 VAL A 15 UNP P0AA31 EXPRESSION TAG SEQADV 1JE3 PRO A 16 UNP P0AA31 EXPRESSION TAG SEQADV 1JE3 ARG A 17 UNP P0AA31 EXPRESSION TAG SEQADV 1JE3 GLY A 18 UNP P0AA31 EXPRESSION TAG SEQADV 1JE3 SER A 19 UNP P0AA31 EXPRESSION TAG SEQADV 1JE3 HIS A 20 UNP P0AA31 EXPRESSION TAG SEQRES 1 A 97 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 97 LEU VAL PRO ARG GLY SER HIS MET LYS ASN ILE VAL PRO SEQRES 3 A 97 ASP TYR ARG LEU ASP MET VAL GLY GLU PRO CYS PRO TYR SEQRES 4 A 97 PRO ALA VAL ALA THR LEU GLU ALA MET PRO GLN LEU LYS SEQRES 5 A 97 LYS GLY GLU ILE LEU GLU VAL VAL SER ASP CYS PRO GLN SEQRES 6 A 97 SER ILE ASN ASN ILE PRO LEU ASP ALA ARG ASN HIS GLY SEQRES 7 A 97 TYR THR VAL LEU ASP ILE GLN GLN ASP GLY PRO THR ILE SEQRES 8 A 97 ARG TYR LEU ILE GLN LYS HELIX 1 1 ALA A 41 MET A 48 1 8 HELIX 2 2 ASN A 68 GLY A 78 1 11 SHEET 1 A 4 PRO A 26 LEU A 30 0 SHEET 2 A 4 ILE A 56 SER A 61 1 O ILE A 56 N ASP A 27 SHEET 3 A 4 ILE A 91 GLN A 96 -1 N ILE A 91 O SER A 61 SHEET 4 A 4 VAL A 81 GLN A 86 -1 N VAL A 81 O GLN A 96 CISPEP 1 TYR A 39 PRO A 40 2 0.97 CISPEP 2 GLY A 88 PRO A 89 3 0.93 CISPEP 3 VAL A 15 PRO A 16 4 0.17 CISPEP 4 VAL A 15 PRO A 16 5 0.35 CISPEP 5 GLY A 88 PRO A 89 7 1.00 CISPEP 6 GLY A 88 PRO A 89 8 1.49 CISPEP 7 CYS A 37 PRO A 38 10 -0.17 CISPEP 8 VAL A 25 PRO A 26 11 -2.19 CISPEP 9 TYR A 39 PRO A 40 12 1.58 CISPEP 10 VAL A 25 PRO A 26 13 1.36 CISPEP 11 CYS A 37 PRO A 38 13 0.62 CISPEP 12 TYR A 39 PRO A 40 13 -0.29 CISPEP 13 VAL A 15 PRO A 16 15 0.42 CISPEP 14 MET A 48 PRO A 49 17 -10.41 CISPEP 15 VAL A 25 PRO A 26 18 0.43 CISPEP 16 TYR A 39 PRO A 40 18 1.53 CISPEP 17 MET A 48 PRO A 49 18 -11.43 CISPEP 18 MET A 48 PRO A 49 19 -11.98 CRYST1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1