HEADER OXIDOREDUCTASE 18-JUN-01 1JEH TITLE CRYSTAL STRUCTURE OF YEAST E3, LIPOAMIDE DEHYDROGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROLIPOAMIDE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.8.1.4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932 KEYWDS 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, PYRUVATE DEHYDROGENASE COMPLEX, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.TOYODA,K.SUZUKI,T.SEKIGUSHI,J.REED,A.TAKENAKA REVDAT 8 25-OCT-23 1JEH 1 REMARK REVDAT 7 06-NOV-19 1JEH 1 JRNL REVDAT 6 07-FEB-18 1JEH 1 REMARK REVDAT 5 04-OCT-17 1JEH 1 REMARK REVDAT 4 24-FEB-09 1JEH 1 VERSN REVDAT 3 01-APR-03 1JEH 1 JRNL REVDAT 2 25-DEC-02 1JEH 1 REMARK REVDAT 1 11-JUL-01 1JEH 0 JRNL AUTH T.TOYODA,K.SUZUKI,T.SEKIGUCHI,L.J.REED,A.TAKENAKA JRNL TITL CRYSTAL STRUCTURE OF EUCARYOTIC E3, LIPOAMIDE DEHYDROGENASE JRNL TITL 2 FROM YEAST. JRNL REF J.BIOCHEM. V. 123 668 1998 JRNL REFN ISSN 0021-924X JRNL PMID 9538259 JRNL DOI 10.1093/OXFORDJOURNALS.JBCHEM.A021989 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 4.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 25458 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7184 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 73 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 2.532 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JEH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JUN-01. REMARK 100 THE DEPOSITION ID IS D_1000013681. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 298.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-18B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : FUJI REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, ROTAVATA REMARK 200 DATA SCALING SOFTWARE : CCP4 (AGROVATA, ROTAVATA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33372 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.2 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 42.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MERLOT REMARK 200 STARTING MODEL: PDB ENTRY 3GRS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG6000, PH 7.00, MICRODIALYSIS, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 48.55000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.95000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 79.35000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.95000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.55000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 79.35000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 1 OG1 CG2 REMARK 470 THR A 124 OG1 CG2 REMARK 470 ASP A 132 CG OD1 OD2 REMARK 470 LEU A 134 CG CD1 CD2 REMARK 470 THR A 137 OG1 CG2 REMARK 470 VAL A 138 CG1 CG2 REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 ASP A 254 CG OD1 OD2 REMARK 470 ASP A 255 CG OD1 OD2 REMARK 470 LYS A 303 CG CD CE NZ REMARK 470 HIS A 351 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 403 CG CD OE1 NE2 REMARK 470 THR B 1 OG1 CG2 REMARK 470 THR B 124 OG1 CG2 REMARK 470 VAL B 131 CG1 CG2 REMARK 470 ASP B 132 CG OD1 OD2 REMARK 470 GLU B 135 CG CD OE1 OE2 REMARK 470 THR B 137 OG1 CG2 REMARK 470 VAL B 138 CG1 CG2 REMARK 470 LYS B 139 CG CD CE NZ REMARK 470 LYS B 256 CG CD CE NZ REMARK 470 LYS B 296 CG CD CE NZ REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 THR A 137 REMARK 475 VAL A 138 REMARK 475 LYS A 139 REMARK 475 VAL B 138 REMARK 475 LYS B 139 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 72 NE - CZ - NH1 ANGL. DEV. = 7.9 DEGREES REMARK 500 ARG A 72 NE - CZ - NH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 TYR A 113 CB - CG - CD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 TRP A 371 CD1 - CG - CD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 TRP A 371 CB - CG - CD1 ANGL. DEV. = -9.4 DEGREES REMARK 500 TRP A 371 CG - CD1 - NE1 ANGL. DEV. = -6.3 DEGREES REMARK 500 TRP A 371 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 TRP A 371 CG - CD2 - CE3 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 398 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ALA B 220 CA - C - N ANGL. DEV. = -15.3 DEGREES REMARK 500 TRP B 371 CD1 - CG - CD2 ANGL. DEV. = 8.2 DEGREES REMARK 500 TRP B 371 CB - CG - CD1 ANGL. DEV. = -7.8 DEGREES REMARK 500 TRP B 371 CG - CD1 - NE1 ANGL. DEV. = -6.4 DEGREES REMARK 500 TRP B 371 CE2 - CD2 - CG ANGL. DEV. = -6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 123 58.12 -93.50 REMARK 500 THR A 124 -29.21 177.90 REMARK 500 GLU A 135 83.80 50.79 REMARK 500 THR A 137 -115.13 54.37 REMARK 500 VAL A 138 63.96 -153.44 REMARK 500 LYS A 139 47.13 81.17 REMARK 500 GLU A 140 124.63 65.62 REMARK 500 ASP A 141 102.29 42.43 REMARK 500 GLU A 168 -60.61 -164.70 REMARK 500 SER A 172 -157.67 -108.42 REMARK 500 ALA A 220 65.01 -31.69 REMARK 500 SER A 221 -12.19 -164.90 REMARK 500 ILE A 248 -63.46 -98.55 REMARK 500 ALA A 250 119.85 -164.63 REMARK 500 ASN A 253 78.76 -100.65 REMARK 500 ASN A 257 -3.59 67.87 REMARK 500 ASN A 269 27.54 -73.25 REMARK 500 PHE A 313 -2.59 65.71 REMARK 500 SER A 315 -143.36 -87.57 REMARK 500 THR A 327 -168.67 -102.41 REMARK 500 ASN A 358 53.97 -116.26 REMARK 500 TYR A 364 40.91 -94.06 REMARK 500 ASP A 404 81.82 -152.48 REMARK 500 GLU A 418 12.31 59.67 REMARK 500 ASN A 429 17.55 56.68 REMARK 500 ASP A 473 -109.91 -139.29 REMARK 500 VAL B 131 -99.72 -87.25 REMARK 500 ASP B 132 -89.97 -157.26 REMARK 500 THR B 137 94.20 -67.82 REMARK 500 VAL B 138 89.87 -21.79 REMARK 500 LYS B 139 -69.91 11.48 REMARK 500 ASP B 141 142.36 -37.20 REMARK 500 GLU B 167 48.72 -76.78 REMARK 500 GLU B 168 -59.86 -141.59 REMARK 500 SER B 172 -168.87 -106.57 REMARK 500 SER B 221 -6.69 -162.23 REMARK 500 LYS B 242 69.14 -108.93 REMARK 500 LYS B 256 111.47 86.32 REMARK 500 THR B 268 79.27 63.01 REMARK 500 ASP B 310 -168.78 -104.57 REMARK 500 PHE B 313 -6.66 68.47 REMARK 500 SER B 315 -149.87 -88.26 REMARK 500 THR B 327 -163.89 -103.67 REMARK 500 TYR B 364 35.92 -88.44 REMARK 500 GLU B 418 14.33 57.20 REMARK 500 ASP B 473 -101.62 -139.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 480 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 580 DBREF 1JEH A 1 478 UNP P09624 DLDH_YEAST 22 499 DBREF 1JEH B 1 478 UNP P09624 DLDH_YEAST 22 499 SEQRES 1 A 478 THR ILE ASN LYS SER HIS ASP VAL VAL ILE ILE GLY GLY SEQRES 2 A 478 GLY PRO ALA GLY TYR VAL ALA ALA ILE LYS ALA ALA GLN SEQRES 3 A 478 LEU GLY PHE ASN THR ALA CYS VAL GLU LYS ARG GLY LYS SEQRES 4 A 478 LEU GLY GLY THR CYS LEU ASN VAL GLY CYS ILE PRO SER SEQRES 5 A 478 LYS ALA LEU LEU ASN ASN SER HIS LEU PHE HIS GLN MET SEQRES 6 A 478 HIS THR GLU ALA GLN LYS ARG GLY ILE ASP VAL ASN GLY SEQRES 7 A 478 ASP ILE LYS ILE ASN VAL ALA ASN PHE GLN LYS ALA LYS SEQRES 8 A 478 ASP ASP ALA VAL LYS GLN LEU THR GLY GLY ILE GLU LEU SEQRES 9 A 478 LEU PHE LYS LYS ASN LYS VAL THR TYR TYR LYS GLY ASN SEQRES 10 A 478 GLY SER PHE GLU ASP GLU THR LYS ILE ARG VAL THR PRO SEQRES 11 A 478 VAL ASP GLY LEU GLU GLY THR VAL LYS GLU ASP HIS ILE SEQRES 12 A 478 LEU ASP VAL LYS ASN ILE ILE VAL ALA THR GLY SER GLU SEQRES 13 A 478 VAL THR PRO PHE PRO GLY ILE GLU ILE ASP GLU GLU LYS SEQRES 14 A 478 ILE VAL SER SER THR GLY ALA LEU SER LEU LYS GLU ILE SEQRES 15 A 478 PRO LYS ARG LEU THR ILE ILE GLY GLY GLY ILE ILE GLY SEQRES 16 A 478 LEU GLU MET GLY SER VAL TYR SER ARG LEU GLY SER LYS SEQRES 17 A 478 VAL THR VAL VAL GLU PHE GLN PRO GLN ILE GLY ALA SER SEQRES 18 A 478 MET ASP GLY GLU VAL ALA LYS ALA THR GLN LYS PHE LEU SEQRES 19 A 478 LYS LYS GLN GLY LEU ASP PHE LYS LEU SER THR LYS VAL SEQRES 20 A 478 ILE SER ALA LYS ARG ASN ASP ASP LYS ASN VAL VAL GLU SEQRES 21 A 478 ILE VAL VAL GLU ASP THR LYS THR ASN LYS GLN GLU ASN SEQRES 22 A 478 LEU GLU ALA GLU VAL LEU LEU VAL ALA VAL GLY ARG ARG SEQRES 23 A 478 PRO TYR ILE ALA GLY LEU GLY ALA GLU LYS ILE GLY LEU SEQRES 24 A 478 GLU VAL ASP LYS ARG GLY ARG LEU VAL ILE ASP ASP GLN SEQRES 25 A 478 PHE ASN SER LYS PHE PRO HIS ILE LYS VAL VAL GLY ASP SEQRES 26 A 478 VAL THR PHE GLY PRO MET LEU ALA HIS LYS ALA GLU GLU SEQRES 27 A 478 GLU GLY ILE ALA ALA VAL GLU MET LEU LYS THR GLY HIS SEQRES 28 A 478 GLY HIS VAL ASN TYR ASN ASN ILE PRO SER VAL MET TYR SEQRES 29 A 478 SER HIS PRO GLU VAL ALA TRP VAL GLY LYS THR GLU GLU SEQRES 30 A 478 GLN LEU LYS GLU ALA GLY ILE ASP TYR LYS ILE GLY LYS SEQRES 31 A 478 PHE PRO PHE ALA ALA ASN SER ARG ALA LYS THR ASN GLN SEQRES 32 A 478 ASP THR GLU GLY PHE VAL LYS ILE LEU ILE ASP SER LYS SEQRES 33 A 478 THR GLU ARG ILE LEU GLY ALA HIS ILE ILE GLY PRO ASN SEQRES 34 A 478 ALA GLY GLU MET ILE ALA GLU ALA GLY LEU ALA LEU GLU SEQRES 35 A 478 TYR GLY ALA SER ALA GLU ASP VAL ALA ARG VAL CYS HIS SEQRES 36 A 478 ALA HIS PRO THR LEU SER GLU ALA PHE LYS GLU ALA ASN SEQRES 37 A 478 MET ALA ALA TYR ASP LYS ALA ILE HIS CYS SEQRES 1 B 478 THR ILE ASN LYS SER HIS ASP VAL VAL ILE ILE GLY GLY SEQRES 2 B 478 GLY PRO ALA GLY TYR VAL ALA ALA ILE LYS ALA ALA GLN SEQRES 3 B 478 LEU GLY PHE ASN THR ALA CYS VAL GLU LYS ARG GLY LYS SEQRES 4 B 478 LEU GLY GLY THR CYS LEU ASN VAL GLY CYS ILE PRO SER SEQRES 5 B 478 LYS ALA LEU LEU ASN ASN SER HIS LEU PHE HIS GLN MET SEQRES 6 B 478 HIS THR GLU ALA GLN LYS ARG GLY ILE ASP VAL ASN GLY SEQRES 7 B 478 ASP ILE LYS ILE ASN VAL ALA ASN PHE GLN LYS ALA LYS SEQRES 8 B 478 ASP ASP ALA VAL LYS GLN LEU THR GLY GLY ILE GLU LEU SEQRES 9 B 478 LEU PHE LYS LYS ASN LYS VAL THR TYR TYR LYS GLY ASN SEQRES 10 B 478 GLY SER PHE GLU ASP GLU THR LYS ILE ARG VAL THR PRO SEQRES 11 B 478 VAL ASP GLY LEU GLU GLY THR VAL LYS GLU ASP HIS ILE SEQRES 12 B 478 LEU ASP VAL LYS ASN ILE ILE VAL ALA THR GLY SER GLU SEQRES 13 B 478 VAL THR PRO PHE PRO GLY ILE GLU ILE ASP GLU GLU LYS SEQRES 14 B 478 ILE VAL SER SER THR GLY ALA LEU SER LEU LYS GLU ILE SEQRES 15 B 478 PRO LYS ARG LEU THR ILE ILE GLY GLY GLY ILE ILE GLY SEQRES 16 B 478 LEU GLU MET GLY SER VAL TYR SER ARG LEU GLY SER LYS SEQRES 17 B 478 VAL THR VAL VAL GLU PHE GLN PRO GLN ILE GLY ALA SER SEQRES 18 B 478 MET ASP GLY GLU VAL ALA LYS ALA THR GLN LYS PHE LEU SEQRES 19 B 478 LYS LYS GLN GLY LEU ASP PHE LYS LEU SER THR LYS VAL SEQRES 20 B 478 ILE SER ALA LYS ARG ASN ASP ASP LYS ASN VAL VAL GLU SEQRES 21 B 478 ILE VAL VAL GLU ASP THR LYS THR ASN LYS GLN GLU ASN SEQRES 22 B 478 LEU GLU ALA GLU VAL LEU LEU VAL ALA VAL GLY ARG ARG SEQRES 23 B 478 PRO TYR ILE ALA GLY LEU GLY ALA GLU LYS ILE GLY LEU SEQRES 24 B 478 GLU VAL ASP LYS ARG GLY ARG LEU VAL ILE ASP ASP GLN SEQRES 25 B 478 PHE ASN SER LYS PHE PRO HIS ILE LYS VAL VAL GLY ASP SEQRES 26 B 478 VAL THR PHE GLY PRO MET LEU ALA HIS LYS ALA GLU GLU SEQRES 27 B 478 GLU GLY ILE ALA ALA VAL GLU MET LEU LYS THR GLY HIS SEQRES 28 B 478 GLY HIS VAL ASN TYR ASN ASN ILE PRO SER VAL MET TYR SEQRES 29 B 478 SER HIS PRO GLU VAL ALA TRP VAL GLY LYS THR GLU GLU SEQRES 30 B 478 GLN LEU LYS GLU ALA GLY ILE ASP TYR LYS ILE GLY LYS SEQRES 31 B 478 PHE PRO PHE ALA ALA ASN SER ARG ALA LYS THR ASN GLN SEQRES 32 B 478 ASP THR GLU GLY PHE VAL LYS ILE LEU ILE ASP SER LYS SEQRES 33 B 478 THR GLU ARG ILE LEU GLY ALA HIS ILE ILE GLY PRO ASN SEQRES 34 B 478 ALA GLY GLU MET ILE ALA GLU ALA GLY LEU ALA LEU GLU SEQRES 35 B 478 TYR GLY ALA SER ALA GLU ASP VAL ALA ARG VAL CYS HIS SEQRES 36 B 478 ALA HIS PRO THR LEU SER GLU ALA PHE LYS GLU ALA ASN SEQRES 37 B 478 MET ALA ALA TYR ASP LYS ALA ILE HIS CYS HET FAD A 480 53 HET FAD B 580 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 HOH *73(H2 O) HELIX 1 1 ALA A 16 LEU A 27 1 12 HELIX 2 2 GLY A 41 VAL A 47 1 7 HELIX 3 3 GLY A 48 THR A 67 1 20 HELIX 4 4 ASN A 83 LYS A 110 1 28 HELIX 5 5 SER A 172 LEU A 177 1 6 HELIX 6 6 GLY A 192 GLY A 206 1 15 HELIX 7 7 ASP A 223 GLN A 237 1 15 HELIX 8 8 GLY A 293 GLY A 298 1 6 HELIX 9 9 LEU A 332 THR A 349 1 18 HELIX 10 10 ASN A 355 ILE A 359 5 5 HELIX 11 11 THR A 375 GLY A 383 1 9 HELIX 12 12 ASN A 396 ASN A 402 1 7 HELIX 13 13 ASN A 429 TYR A 443 1 15 HELIX 14 14 SER A 446 ARG A 452 1 7 HELIX 15 15 SER A 461 ASP A 473 1 13 HELIX 16 16 GLY B 14 LEU B 27 1 14 HELIX 17 17 GLY B 41 GLY B 48 1 8 HELIX 18 18 GLY B 48 GLU B 68 1 21 HELIX 19 19 ASN B 83 ASN B 109 1 27 HELIX 20 20 SER B 172 SER B 178 1 7 HELIX 21 21 GLY B 192 GLY B 206 1 15 HELIX 22 22 ASP B 223 GLN B 237 1 15 HELIX 23 23 GLY B 324 THR B 327 5 4 HELIX 24 24 LEU B 332 GLY B 350 1 19 HELIX 25 25 THR B 375 ALA B 382 1 8 HELIX 26 26 ASN B 396 ASN B 402 1 7 HELIX 27 27 ASN B 429 GLY B 444 1 16 HELIX 28 28 SER B 446 ARG B 452 1 7 HELIX 29 29 SER B 461 ASP B 473 1 13 SHEET 1 A 6 THR A 112 TYR A 114 0 SHEET 2 A 6 THR A 31 VAL A 34 1 O THR A 31 N THR A 112 SHEET 3 A 6 ILE A 2 ILE A 11 1 O VAL A 8 N ALA A 32 SHEET 4 A 6 HIS A 142 VAL A 151 1 N ILE A 143 O ILE A 2 SHEET 5 A 6 LYS A 125 PRO A 130 -1 O ILE A 126 N LEU A 144 SHEET 6 A 6 GLY A 116 PHE A 120 -1 O ASN A 117 N THR A 129 SHEET 1 B 5 THR A 112 TYR A 114 0 SHEET 2 B 5 THR A 31 VAL A 34 1 O THR A 31 N THR A 112 SHEET 3 B 5 ILE A 2 ILE A 11 1 O VAL A 8 N ALA A 32 SHEET 4 B 5 HIS A 142 VAL A 151 1 N ILE A 143 O ILE A 2 SHEET 5 B 5 ILE A 320 VAL A 322 1 O LYS A 321 N VAL A 151 SHEET 1 C 2 ILE A 74 ILE A 82 0 SHEET 2 C 2 ILE B 74 ILE B 82 -1 O ASP B 75 N LYS A 81 SHEET 1 D 2 SER A 155 VAL A 157 0 SHEET 2 D 2 ARG A 285 PRO A 287 -1 O ARG A 286 N GLU A 156 SHEET 1 E 5 ILE A 170 VAL A 171 0 SHEET 2 E 5 VAL A 278 VAL A 281 1 O LEU A 279 N VAL A 171 SHEET 3 E 5 ARG A 185 ILE A 189 1 O ARG A 185 N VAL A 278 SHEET 4 E 5 LYS A 208 GLU A 213 1 O LYS A 208 N LEU A 186 SHEET 5 E 5 ASP A 240 LEU A 243 1 N ASP A 240 O VAL A 209 SHEET 1 F 3 THR A 245 ARG A 252 0 SHEET 2 F 3 VAL A 259 ASP A 265 -1 N GLU A 260 O LYS A 251 SHEET 3 F 3 GLN A 271 ALA A 276 -1 O GLU A 272 N VAL A 263 SHEET 1 G 5 SER A 361 MET A 363 0 SHEET 2 G 5 GLU A 368 GLY A 373 -1 O VAL A 369 N MET A 363 SHEET 3 G 5 ILE A 420 GLY A 427 -1 N ALA A 423 O VAL A 372 SHEET 4 G 5 PHE A 408 ASP A 414 -1 O PHE A 408 N ILE A 426 SHEET 5 G 5 TYR A 386 PRO A 392 -1 O LYS A 387 N ILE A 413 SHEET 1 H 6 THR B 112 LYS B 115 0 SHEET 2 H 6 THR B 31 GLU B 35 1 O THR B 31 N THR B 112 SHEET 3 H 6 SER B 5 ILE B 11 1 O VAL B 8 N ALA B 32 SHEET 4 H 6 HIS B 142 VAL B 151 1 O ASP B 145 N HIS B 6 SHEET 5 H 6 LYS B 125 THR B 129 -1 O ILE B 126 N LEU B 144 SHEET 6 H 6 ASN B 117 ASP B 122 -1 O ASN B 117 N THR B 129 SHEET 1 I 5 THR B 112 LYS B 115 0 SHEET 2 I 5 THR B 31 GLU B 35 1 O THR B 31 N THR B 112 SHEET 3 I 5 SER B 5 ILE B 11 1 O VAL B 8 N ALA B 32 SHEET 4 I 5 HIS B 142 VAL B 151 1 O ASP B 145 N HIS B 6 SHEET 5 I 5 ILE B 320 VAL B 322 1 N LYS B 321 O ILE B 149 SHEET 1 J 2 SER B 155 VAL B 157 0 SHEET 2 J 2 ARG B 285 PRO B 287 -1 N ARG B 286 O GLU B 156 SHEET 1 K 4 LEU B 239 LEU B 243 0 SHEET 2 K 4 LYS B 208 GLU B 213 1 O VAL B 209 N ASP B 240 SHEET 3 K 4 ARG B 185 ILE B 189 1 O LEU B 186 N THR B 210 SHEET 4 K 4 VAL B 278 VAL B 281 1 O VAL B 278 N THR B 187 SHEET 1 L 3 THR B 245 ASN B 253 0 SHEET 2 L 3 VAL B 258 ASP B 265 -1 O VAL B 258 N ASN B 253 SHEET 3 L 3 GLN B 271 ALA B 276 -1 O GLU B 272 N VAL B 263 SHEET 1 M 5 SER B 361 MET B 363 0 SHEET 2 M 5 GLU B 368 GLY B 373 -1 O VAL B 369 N MET B 363 SHEET 3 M 5 ILE B 420 GLY B 427 -1 N ALA B 423 O VAL B 372 SHEET 4 M 5 PHE B 408 ASP B 414 -1 O PHE B 408 N ILE B 426 SHEET 5 M 5 TYR B 386 PRO B 392 -1 O LYS B 387 N ILE B 413 SSBOND 1 CYS A 44 CYS A 49 1555 1555 2.02 SSBOND 2 CYS B 44 CYS B 49 1555 1555 2.02 CISPEP 1 HIS A 366 PRO A 367 0 1.60 CISPEP 2 HIS A 457 PRO A 458 0 -14.77 CISPEP 3 HIS B 366 PRO B 367 0 1.45 CISPEP 4 HIS B 457 PRO B 458 0 -17.31 SITE 1 AC1 36 ILE A 11 GLY A 12 GLY A 14 PRO A 15 SITE 2 AC1 36 ALA A 16 VAL A 34 GLU A 35 LYS A 36 SITE 3 AC1 36 ARG A 37 GLY A 42 THR A 43 CYS A 44 SITE 4 AC1 36 VAL A 47 GLY A 48 CYS A 49 SER A 52 SITE 5 AC1 36 LYS A 53 GLY A 118 ALA A 152 THR A 153 SITE 6 AC1 36 GLY A 154 SER A 173 ILE A 194 ARG A 285 SITE 7 AC1 36 TYR A 288 GLY A 291 LEU A 292 GLY A 324 SITE 8 AC1 36 ASP A 325 MET A 331 LEU A 332 ALA A 333 SITE 9 AC1 36 HIS A 334 TYR A 364 HIS B 457 PRO B 458 SITE 1 AC2 37 HIS A 457 PRO A 458 ILE B 11 GLY B 12 SITE 2 AC2 37 GLY B 14 PRO B 15 ALA B 16 GLU B 35 SITE 3 AC2 37 LYS B 36 ARG B 37 GLY B 42 THR B 43 SITE 4 AC2 37 CYS B 44 GLY B 48 CYS B 49 SER B 52 SITE 5 AC2 37 LYS B 53 ASN B 117 GLY B 118 ALA B 152 SITE 6 AC2 37 THR B 153 GLY B 154 SER B 155 SER B 173 SITE 7 AC2 37 ARG B 285 TYR B 288 ALA B 290 GLY B 291 SITE 8 AC2 37 LEU B 292 GLY B 324 ASP B 325 MET B 331 SITE 9 AC2 37 LEU B 332 ALA B 333 HIS B 334 TYR B 364 SITE 10 AC2 37 HOH B 611 CRYST1 97.100 158.700 67.900 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010299 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006301 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014728 0.00000