data_1JEK # _entry.id 1JEK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1JEK RCSB RCSB013684 WWPDB D_1000013684 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1JEK _pdbx_database_status.recvd_initial_deposition_date 2001-06-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Malashkevich, V.N.' 1 'Singh, M.' 2 'Kim, P.S.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'The trimer-of-hairpins motif in membrane fusion: Visna virus.' Proc.Natl.Acad.Sci.USA 98 8502 8506 2001 PNASA6 US 0027-8424 0040 ? 11447278 10.1073/pnas.151254798 1 ;Crystal Structure of the Simian Immunodeficiency Virus (Siv) Gp41 Core: Conserved Helical Interactions Underlie the Broad Inhibitory Activity of Gp41 Peptides ; Proc.Natl.Acad.Sci.USA 95 9134 9139 1998 PNASA6 US 0027-8424 0040 ? ? 10.1073/pnas.95.16.9134 2 'Core Structure of Gp41 from the HIV Envelope Glycoprotein' 'Cell(Cambridge,Mass.)' 89 263 273 1997 CELLB5 US 0092-8674 0998 ? ? '10.1016/S0092-8674(00)80205-6' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Malashkevich, V.N.' 1 primary 'Singh, M.' 2 primary 'Kim, P.S.' 3 1 'Malashkevich, V.N.' 4 1 'Chan, D.C.' 5 1 'Chutkowski, C.T.' 6 1 'Kim, P.S.' 7 2 'Chan, D.C.' 8 2 'Fass, D.' 9 2 'Berger, J.M.' 10 2 'Kim, P.S.' 11 # _cell.entry_id 1JEK _cell.length_a 52.548 _cell.length_b 52.548 _cell.length_c 61.686 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JEK _symmetry.space_group_name_H-M 'P 3 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'ENV POLYPROTEIN' 4336.971 1 ? ? ? ? 2 polymer syn 'ENV POLYPROTEIN' 4126.549 1 ? ? ? ? 3 water nat water 18.015 142 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'COAT POLYPROTEIN' 2 'COAT POLYPROTEIN' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes '(ACE)QSLANATAAQQEVLEASYAMVQHIAKGIRILEARVARVEA(NH2)' XQSLANATAAQQEVLEASYAMVQHIAKGIRILEARVARVEAX A ? 2 'polypeptide(L)' no yes '(ACE)WQQWEEEIEQHEGNLSLLLREAALQVHIAQRDAR(NH2)' XWQQWEEEIEQHEGNLSLLLREAALQVHIAQRDARX B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 GLN n 1 3 SER n 1 4 LEU n 1 5 ALA n 1 6 ASN n 1 7 ALA n 1 8 THR n 1 9 ALA n 1 10 ALA n 1 11 GLN n 1 12 GLN n 1 13 GLU n 1 14 VAL n 1 15 LEU n 1 16 GLU n 1 17 ALA n 1 18 SER n 1 19 TYR n 1 20 ALA n 1 21 MET n 1 22 VAL n 1 23 GLN n 1 24 HIS n 1 25 ILE n 1 26 ALA n 1 27 LYS n 1 28 GLY n 1 29 ILE n 1 30 ARG n 1 31 ILE n 1 32 LEU n 1 33 GLU n 1 34 ALA n 1 35 ARG n 1 36 VAL n 1 37 ALA n 1 38 ARG n 1 39 VAL n 1 40 GLU n 1 41 ALA n 1 42 NH2 n 2 1 ACE n 2 2 TRP n 2 3 GLN n 2 4 GLN n 2 5 TRP n 2 6 GLU n 2 7 GLU n 2 8 GLU n 2 9 ILE n 2 10 GLU n 2 11 GLN n 2 12 HIS n 2 13 GLU n 2 14 GLY n 2 15 ASN n 2 16 LEU n 2 17 SER n 2 18 LEU n 2 19 LEU n 2 20 LEU n 2 21 ARG n 2 22 GLU n 2 23 ALA n 2 24 ALA n 2 25 LEU n 2 26 GLN n 2 27 VAL n 2 28 HIS n 2 29 ILE n 2 30 ALA n 2 31 GLN n 2 32 ARG n 2 33 ASP n 2 34 ALA n 2 35 ARG n 2 36 NH2 n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'This peptide was chemically synthesized. The sequence of the peptide is naturally found in Visna virus.' 2 1 sample ? ? ? ? ? 'This peptide was chemically synthesized. The sequence of the peptide is naturally found in Visna virus.' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP ENV_VILVK 1 P35954 693 QSLANATAAQQEVLEASYAMVQHIAKGIRILEARVARVEA ? 2 UNP ENV_VILVK 2 P35954 775 WQQWEEEIEQHEGNLSLLLREAALQVHIAQRDAR ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1JEK A 2 ? 41 ? P35954 693 ? 732 ? 546 585 2 2 1JEK B 2 ? 35 ? P35954 775 ? 808 ? 628 661 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1JEK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.91 _exptl_crystal.density_percent_sol 57.67 _exptl_crystal.description 'POLYSERINE MODEL' # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '25% tert-butanol, 0.1M TRIS-HCL, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 1998-12-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.28 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4A _diffrn_source.pdbx_wavelength 1.28 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1JEK _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 25.0 _reflns.d_resolution_high 1.5 _reflns.number_obs 16300 _reflns.number_all ? _reflns.percent_possible_obs 90.1 _reflns.pdbx_Rmerge_I_obs 0.0660000 _reflns.pdbx_Rsym_value 0.0660000 _reflns.pdbx_netI_over_sigmaI 13.9 _reflns.B_iso_Wilson_estimate 22.9 _reflns.pdbx_redundancy 7.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.5 _reflns_shell.d_res_low 1.52 _reflns_shell.percent_possible_all 64.7 _reflns_shell.Rmerge_I_obs 0.1380000 _reflns_shell.pdbx_Rsym_value 0.1380000 _reflns_shell.meanI_over_sigI_obs 2.5 _reflns_shell.pdbx_redundancy 1.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1JEK _refine.ls_number_reflns_obs 15369 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 914104.10 _refine.pdbx_data_cutoff_low_absF 0.00 _refine.ls_d_res_low 9.96 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 94.9 _refine.ls_R_factor_obs 0.2130000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2130000 _refine.ls_R_factor_R_free 0.2650000 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.1 _refine.ls_number_reflns_R_free 1559 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 31.1 _refine.aniso_B[1][1] 6.82 _refine.aniso_B[2][2] 6.82 _refine.aniso_B[3][3] -13.64 _refine.aniso_B[1][2] 3.16 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.451 _refine.solvent_model_param_bsol 94.78 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 2SIV' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1JEK _refine_analyze.Luzzati_coordinate_error_obs 0.19 _refine_analyze.Luzzati_sigma_a_obs 0.21 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.24 _refine_analyze.Luzzati_sigma_a_free 0.22 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 598 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 142 _refine_hist.number_atoms_total 740 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 9.96 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 13.9 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.99 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.50 _refine_ls_shell.d_res_low 1.59 _refine_ls_shell.number_reflns_R_work 1723 _refine_ls_shell.R_factor_R_work 0.3190000 _refine_ls_shell.percent_reflns_obs 72.6 _refine_ls_shell.R_factor_R_free 0.3630000 _refine_ls_shell.R_factor_R_free_error 0.026 _refine_ls_shell.percent_reflns_R_free 10.5 _refine_ls_shell.number_reflns_R_free 202 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 ION.PARAM ? 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM ? 'X-RAY DIFFRACTION' # _struct.entry_id 1JEK _struct.title 'Visna TM CORE STRUCTURE' _struct.pdbx_descriptor 'ENV POLYPROTEIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1JEK _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'ENVELOPE GLYCOPROTEIN, RETROVIRUS, HIV, SIV, GP41, Viral protein' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details 'Trimer is formed around the crystallographic 3-fold axis' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 2 ? ALA A 41 ? GLN A 546 ALA A 585 1 ? 40 HELX_P HELX_P2 2 TRP B 2 ? ARG B 35 ? TRP B 628 ARG B 661 1 ? 34 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ACE 1 C ? ? ? 1_555 A GLN 2 N ? ? A ACE 545 A GLN 546 1_555 ? ? ? ? ? ? ? 1.332 ? covale2 covale ? ? A ALA 41 C ? ? ? 1_555 A NH2 42 N ? ? A ALA 585 A NH2 586 1_555 ? ? ? ? ? ? ? 1.322 ? covale3 covale ? ? B ACE 1 C ? ? ? 1_555 B TRP 2 N ? ? B ACE 627 B TRP 628 1_555 ? ? ? ? ? ? ? 1.323 ? covale4 covale ? ? B ARG 35 C ? ? ? 1_555 B NH2 36 N ? ? B ARG 661 B NH2 662 1_555 ? ? ? ? ? ? ? 1.323 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE ACE A 545' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE ACE B 627' AC3 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE NH2 A 586' AC4 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE NH2 B 662' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 ALA A 5 ? ALA A 549 . ? 3_565 ? 2 AC1 2 HOH D . ? HOH B 66 . ? 1_555 ? 3 AC2 3 GLN B 3 ? GLN B 629 . ? 3_565 ? 4 AC2 3 TRP B 5 ? TRP B 631 . ? 3_565 ? 5 AC2 3 HOH D . ? HOH B 47 . ? 3_565 ? 6 AC3 2 ALA A 41 ? ALA A 585 . ? 3_565 ? 7 AC3 2 HOH D . ? HOH B 12 . ? 3_565 ? 8 AC4 2 ALA B 34 ? ALA B 660 . ? 2_665 ? 9 AC4 2 ARG B 35 ? ARG B 661 . ? 2_665 ? # _database_PDB_matrix.entry_id 1JEK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1JEK _atom_sites.fract_transf_matrix[1][1] 0.019030 _atom_sites.fract_transf_matrix[1][2] 0.010987 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021974 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016211 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 545 545 ACE ACE A . n A 1 2 GLN 2 546 546 GLN GLN A . n A 1 3 SER 3 547 547 SER SER A . n A 1 4 LEU 4 548 548 LEU LEU A . n A 1 5 ALA 5 549 549 ALA ALA A . n A 1 6 ASN 6 550 550 ASN ASN A . n A 1 7 ALA 7 551 551 ALA ALA A . n A 1 8 THR 8 552 552 THR THR A . n A 1 9 ALA 9 553 553 ALA ALA A . n A 1 10 ALA 10 554 554 ALA ALA A . n A 1 11 GLN 11 555 555 GLN GLN A . n A 1 12 GLN 12 556 556 GLN GLN A . n A 1 13 GLU 13 557 557 GLU GLU A . n A 1 14 VAL 14 558 558 VAL VAL A . n A 1 15 LEU 15 559 559 LEU LEU A . n A 1 16 GLU 16 560 560 GLU GLU A . n A 1 17 ALA 17 561 561 ALA ALA A . n A 1 18 SER 18 562 562 SER SER A . n A 1 19 TYR 19 563 563 TYR TYR A . n A 1 20 ALA 20 564 564 ALA ALA A . n A 1 21 MET 21 565 565 MET MET A . n A 1 22 VAL 22 566 566 VAL VAL A . n A 1 23 GLN 23 567 567 GLN GLN A . n A 1 24 HIS 24 568 568 HIS HIS A . n A 1 25 ILE 25 569 569 ILE ILE A . n A 1 26 ALA 26 570 570 ALA ALA A . n A 1 27 LYS 27 571 571 LYS LYS A . n A 1 28 GLY 28 572 572 GLY GLY A . n A 1 29 ILE 29 573 573 ILE ILE A . n A 1 30 ARG 30 574 574 ARG ARG A . n A 1 31 ILE 31 575 575 ILE ILE A . n A 1 32 LEU 32 576 576 LEU LEU A . n A 1 33 GLU 33 577 577 GLU GLU A . n A 1 34 ALA 34 578 578 ALA ALA A . n A 1 35 ARG 35 579 579 ARG ARG A . n A 1 36 VAL 36 580 580 VAL VAL A . n A 1 37 ALA 37 581 581 ALA ALA A . n A 1 38 ARG 38 582 582 ARG ARG A . n A 1 39 VAL 39 583 583 VAL VAL A . n A 1 40 GLU 40 584 584 GLU GLU A . n A 1 41 ALA 41 585 585 ALA ALA A . n A 1 42 NH2 42 586 586 NH2 NHH A . n B 2 1 ACE 1 627 627 ACE ACE B . n B 2 2 TRP 2 628 628 TRP TRP B . n B 2 3 GLN 3 629 629 GLN GLN B . n B 2 4 GLN 4 630 630 GLN GLN B . n B 2 5 TRP 5 631 631 TRP TRP B . n B 2 6 GLU 6 632 632 GLU GLU B . n B 2 7 GLU 7 633 633 GLU GLU B . n B 2 8 GLU 8 634 634 GLU GLU B . n B 2 9 ILE 9 635 635 ILE ILE B . n B 2 10 GLU 10 636 636 GLU GLU B . n B 2 11 GLN 11 637 637 GLN GLN B . n B 2 12 HIS 12 638 638 HIS HIS B . n B 2 13 GLU 13 639 639 GLU GLU B . n B 2 14 GLY 14 640 640 GLY GLY B . n B 2 15 ASN 15 641 641 ASN ASN B . n B 2 16 LEU 16 642 642 LEU LEU B . n B 2 17 SER 17 643 643 SER SER B . n B 2 18 LEU 18 644 644 LEU LEU B . n B 2 19 LEU 19 645 645 LEU LEU B . n B 2 20 LEU 20 646 646 LEU LEU B . n B 2 21 ARG 21 647 647 ARG ARG B . n B 2 22 GLU 22 648 648 GLU GLU B . n B 2 23 ALA 23 649 649 ALA ALA B . n B 2 24 ALA 24 650 650 ALA ALA B . n B 2 25 LEU 25 651 651 LEU LEU B . n B 2 26 GLN 26 652 652 GLN GLN B . n B 2 27 VAL 27 653 653 VAL VAL B . n B 2 28 HIS 28 654 654 HIS HIS B . n B 2 29 ILE 29 655 655 ILE THR B . n B 2 30 ALA 30 656 656 ALA ALA B . n B 2 31 GLN 31 657 657 GLN GLN B . n B 2 32 ARG 32 658 658 ARG ARG B . n B 2 33 ASP 33 659 659 ASP ASP B . n B 2 34 ALA 34 660 660 ALA ALA B . n B 2 35 ARG 35 661 661 ARG ARG B . n B 2 36 NH2 36 662 662 NH2 NHH B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 13060 ? 1 MORE -103 ? 1 'SSA (A^2)' 11000 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 26.2740000000 0.8660254038 -0.5000000000 0.0000000000 45.5079029181 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5000000000 0.8660254038 0.0000000000 -26.2740000000 -0.8660254038 -0.5000000000 0.0000000000 45.5079029181 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 1 ? C HOH . 2 1 A HOH 4 ? C HOH . 3 1 A HOH 40 ? C HOH . 4 1 A HOH 46 ? C HOH . 5 1 B HOH 42 ? D HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-07-25 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-11-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Atomic model' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 CNS refinement 1.0 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OE2 _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 GLU _pdbx_validate_symm_contact.auth_seq_id_1 632 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 107 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_565 _pdbx_validate_symm_contact.dist 2.12 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 1 1 HOH WAT A . C 3 HOH 2 2 2 HOH WAT A . C 3 HOH 3 4 4 HOH WAT A . C 3 HOH 4 5 5 HOH WAT A . C 3 HOH 5 6 6 HOH WAT A . C 3 HOH 6 7 7 HOH WAT A . C 3 HOH 7 8 8 HOH WAT A . C 3 HOH 8 9 9 HOH WAT A . C 3 HOH 9 13 13 HOH WAT A . C 3 HOH 10 14 14 HOH WAT A . C 3 HOH 11 15 15 HOH WAT A . C 3 HOH 12 16 16 HOH WAT A . C 3 HOH 13 17 17 HOH WAT A . C 3 HOH 14 18 18 HOH WAT A . C 3 HOH 15 20 20 HOH WAT A . C 3 HOH 16 22 22 HOH WAT A . C 3 HOH 17 23 23 HOH WAT A . C 3 HOH 18 24 24 HOH WAT A . C 3 HOH 19 25 25 HOH WAT A . C 3 HOH 20 26 26 HOH WAT A . C 3 HOH 21 27 27 HOH WAT A . C 3 HOH 22 28 28 HOH WAT A . C 3 HOH 23 31 31 HOH WAT A . C 3 HOH 24 32 32 HOH WAT A . C 3 HOH 25 33 33 HOH WAT A . C 3 HOH 26 34 34 HOH WAT A . C 3 HOH 27 35 35 HOH WAT A . C 3 HOH 28 36 36 HOH WAT A . C 3 HOH 29 37 37 HOH WAT A . C 3 HOH 30 39 39 HOH WAT A . C 3 HOH 31 40 40 HOH WAT A . C 3 HOH 32 41 41 HOH WAT A . C 3 HOH 33 44 44 HOH WAT A . C 3 HOH 34 46 46 HOH WAT A . C 3 HOH 35 48 48 HOH WAT A . C 3 HOH 36 49 49 HOH WAT A . C 3 HOH 37 50 50 HOH WAT A . C 3 HOH 38 52 52 HOH WAT A . C 3 HOH 39 59 59 HOH WAT A . C 3 HOH 40 61 61 HOH WAT A . C 3 HOH 41 62 62 HOH WAT A . C 3 HOH 42 63 63 HOH WAT A . C 3 HOH 43 64 64 HOH WAT A . C 3 HOH 44 65 65 HOH WAT A . C 3 HOH 45 68 68 HOH WAT A . C 3 HOH 46 71 71 HOH WAT A . C 3 HOH 47 72 72 HOH WAT A . C 3 HOH 48 73 73 HOH WAT A . C 3 HOH 49 75 75 HOH WAT A . C 3 HOH 50 78 78 HOH WAT A . C 3 HOH 51 80 80 HOH WAT A . C 3 HOH 52 82 82 HOH WAT A . C 3 HOH 53 83 83 HOH WAT A . C 3 HOH 54 89 89 HOH WAT A . C 3 HOH 55 90 90 HOH WAT A . C 3 HOH 56 94 94 HOH WAT A . C 3 HOH 57 97 97 HOH WAT A . C 3 HOH 58 99 99 HOH WAT A . C 3 HOH 59 101 101 HOH WAT A . C 3 HOH 60 102 102 HOH WAT A . C 3 HOH 61 105 105 HOH WAT A . C 3 HOH 62 107 107 HOH WAT A . C 3 HOH 63 108 108 HOH WAT A . C 3 HOH 64 112 112 HOH WAT A . C 3 HOH 65 114 114 HOH WAT A . C 3 HOH 66 116 116 HOH WAT A . C 3 HOH 67 117 117 HOH WAT A . C 3 HOH 68 118 118 HOH WAT A . C 3 HOH 69 119 119 HOH WAT A . C 3 HOH 70 120 120 HOH WAT A . C 3 HOH 71 128 128 HOH WAT A . C 3 HOH 72 129 129 HOH WAT A . C 3 HOH 73 130 130 HOH WAT A . C 3 HOH 74 131 131 HOH WAT A . C 3 HOH 75 132 132 HOH WAT A . C 3 HOH 76 133 133 HOH WAT A . C 3 HOH 77 134 134 HOH WAT A . C 3 HOH 78 135 135 HOH WAT A . C 3 HOH 79 138 138 HOH WAT A . C 3 HOH 80 139 139 HOH WAT A . C 3 HOH 81 140 140 HOH WAT A . C 3 HOH 82 141 141 HOH WAT A . D 3 HOH 1 3 3 HOH WAT B . D 3 HOH 2 10 10 HOH WAT B . D 3 HOH 3 11 11 HOH WAT B . D 3 HOH 4 12 12 HOH WAT B . D 3 HOH 5 19 19 HOH WAT B . D 3 HOH 6 21 21 HOH WAT B . D 3 HOH 7 29 29 HOH WAT B . D 3 HOH 8 30 30 HOH WAT B . D 3 HOH 9 38 38 HOH WAT B . D 3 HOH 10 42 42 HOH WAT B . D 3 HOH 11 43 43 HOH WAT B . D 3 HOH 12 45 45 HOH WAT B . D 3 HOH 13 47 47 HOH WAT B . D 3 HOH 14 51 51 HOH WAT B . D 3 HOH 15 54 54 HOH WAT B . D 3 HOH 16 55 55 HOH WAT B . D 3 HOH 17 56 56 HOH WAT B . D 3 HOH 18 57 57 HOH WAT B . D 3 HOH 19 60 60 HOH WAT B . D 3 HOH 20 66 66 HOH WAT B . D 3 HOH 21 67 67 HOH WAT B . D 3 HOH 22 69 69 HOH WAT B . D 3 HOH 23 70 70 HOH WAT B . D 3 HOH 24 74 74 HOH WAT B . D 3 HOH 25 76 76 HOH WAT B . D 3 HOH 26 77 77 HOH WAT B . D 3 HOH 27 79 79 HOH WAT B . D 3 HOH 28 81 81 HOH WAT B . D 3 HOH 29 84 84 HOH WAT B . D 3 HOH 30 85 85 HOH WAT B . D 3 HOH 31 87 87 HOH WAT B . D 3 HOH 32 88 88 HOH WAT B . D 3 HOH 33 91 91 HOH WAT B . D 3 HOH 34 92 92 HOH WAT B . D 3 HOH 35 93 93 HOH WAT B . D 3 HOH 36 95 95 HOH WAT B . D 3 HOH 37 96 96 HOH WAT B . D 3 HOH 38 98 98 HOH WAT B . D 3 HOH 39 104 104 HOH WAT B . D 3 HOH 40 106 106 HOH WAT B . D 3 HOH 41 109 109 HOH WAT B . D 3 HOH 42 110 110 HOH WAT B . D 3 HOH 43 111 111 HOH WAT B . D 3 HOH 44 115 115 HOH WAT B . D 3 HOH 45 121 121 HOH WAT B . D 3 HOH 46 122 122 HOH WAT B . D 3 HOH 47 123 123 HOH WAT B . D 3 HOH 48 125 125 HOH WAT B . D 3 HOH 49 126 126 HOH WAT B . D 3 HOH 50 127 127 HOH WAT B . D 3 HOH 51 136 136 HOH WAT B . D 3 HOH 52 137 137 HOH WAT B . D 3 HOH 53 142 142 HOH WAT B . D 3 HOH 54 143 143 HOH WAT B . D 3 HOH 55 144 144 HOH WAT B . D 3 HOH 56 145 145 HOH WAT B . D 3 HOH 57 146 146 HOH WAT B . D 3 HOH 58 147 147 HOH WAT B . D 3 HOH 59 148 148 HOH WAT B . D 3 HOH 60 149 149 HOH WAT B . #