HEADER DNA BINDING PROTEIN/DNA 19-JUN-01 1JEY TITLE CRYSTAL STRUCTURE OF THE KU HETERODIMER BOUND TO DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*GP*TP*TP*TP*TP*TP*AP*GP*TP*TP*TP*AP*TP*TP*GP*GP*GP*CP*GP*CP*G)- COMPND 4 3'); COMPND 5 CHAIN: C; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (34-MER); COMPND 9 CHAIN: D; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: KU70; COMPND 13 CHAIN: A; COMPND 14 SYNONYM: HOMO SAPIENS THYROID AUTOANTIGEN 70KD; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: KU80; COMPND 18 CHAIN: B; COMPND 19 FRAGMENT: RESIDUES 1-565; COMPND 20 SYNONYM: DNA REPAIR PROTEIN XRCC5; COMPND 21 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: G22P1; SOURCE 10 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 11 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 13 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 15 EXPRESSION_SYSTEM_PLASMID: PFASTBAC HT; SOURCE 16 MOL_ID: 4; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606; SOURCE 20 GENE: XRCC5; SOURCE 21 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 22 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 24 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 25 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 26 EXPRESSION_SYSTEM_PLASMID: PFASTBAC HT KEYWDS DOUBLE-STRAND DNA BREAK REPAIR, NON-HOMOLOGOUS END-JOINING, PROTEIN- KEYWDS 2 NUCLEIC ACID COMPLEX, ALPHA/BETA DOMAIN, BETA BARREL, HELICAL C- KEYWDS 3 TERMINAL ARM, SAP DOMAIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.R.WALKER,R.A.CORPINA,J.GOLDBERG REVDAT 5 16-AUG-23 1JEY 1 REMARK REVDAT 4 14-FEB-18 1JEY 1 REMARK REVDAT 3 24-FEB-09 1JEY 1 VERSN REVDAT 2 30-JAN-02 1JEY 1 COMPND SOURCE KEYWDS REVDAT 1 10-AUG-01 1JEY 0 JRNL AUTH J.R.WALKER,R.A.CORPINA,J.GOLDBERG JRNL TITL STRUCTURE OF THE KU HETERODIMER BOUND TO DNA AND ITS JRNL TITL 2 IMPLICATIONS FOR DOUBLE-STRAND BREAK REPAIR. JRNL REF NATURE V. 412 607 2001 JRNL REFN ISSN 0028-0836 JRNL PMID 11493912 JRNL DOI 10.1038/35088000 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2533650.680 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 46176 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2304 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7271 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 348 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8224 REMARK 3 NUCLEIC ACID ATOMS : 993 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 255 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.62000 REMARK 3 B22 (A**2) : -3.70000 REMARK 3 B33 (A**2) : -1.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.40 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.240 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.550 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.650 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.970 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.970 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 34.46 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JEY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-01. REMARK 100 THE DEPOSITION ID IS D_1000013691. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X9A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46176 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 67.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.30600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1JEQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% POLYETHYLENE GLYCOL 350 MONOMETHYL REMARK 280 ETHER, 50 MM TRIS-HCL PH 8.0, 5 MM MAGNESIUM CHLORIDE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.96000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.21800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.15250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.21800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.96000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.15250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DG C 19 REMARK 465 DC C 20 REMARK 465 DG C 21 REMARK 465 DC D 1 REMARK 465 DG D 2 REMARK 465 DC D 3 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 TRP A 4 REMARK 465 GLU A 5 REMARK 465 SER A 6 REMARK 465 TYR A 7 REMARK 465 TYR A 8 REMARK 465 LYS A 9 REMARK 465 THR A 10 REMARK 465 GLU A 11 REMARK 465 GLY A 12 REMARK 465 ASP A 13 REMARK 465 GLU A 14 REMARK 465 GLU A 15 REMARK 465 ALA A 16 REMARK 465 GLU A 17 REMARK 465 GLU A 18 REMARK 465 GLU A 19 REMARK 465 GLN A 20 REMARK 465 GLU A 21 REMARK 465 GLU A 22 REMARK 465 ASN A 23 REMARK 465 LEU A 24 REMARK 465 GLU A 25 REMARK 465 ALA A 26 REMARK 465 SER A 27 REMARK 465 GLY A 28 REMARK 465 ASP A 29 REMARK 465 TYR A 30 REMARK 465 LYS A 31 REMARK 465 TYR A 32 REMARK 465 SER A 33 REMARK 465 ILE A 223 REMARK 465 ALA A 224 REMARK 465 GLU A 225 REMARK 465 ASP A 226 REMARK 465 GLU A 227 REMARK 465 ASP A 228 REMARK 465 LEU A 229 REMARK 465 ARG A 230 REMARK 465 ASN A 535 REMARK 465 PRO A 536 REMARK 465 GLU A 537 REMARK 465 GLY A 538 REMARK 465 LYS A 539 REMARK 465 VAL A 540 REMARK 465 THR A 541 REMARK 465 LYS A 542 REMARK 465 ARG A 543 REMARK 465 LYS A 544 REMARK 465 HIS A 545 REMARK 465 ASP A 546 REMARK 465 ASN A 547 REMARK 465 GLU A 548 REMARK 465 GLY A 549 REMARK 465 SER A 550 REMARK 465 GLY A 551 REMARK 465 SER A 552 REMARK 465 LYS A 553 REMARK 465 ARG A 554 REMARK 465 PRO A 555 REMARK 465 LYS A 556 REMARK 465 VAL A 557 REMARK 465 GLU A 558 REMARK 465 TYR A 559 REMARK 465 SER A 560 REMARK 465 GLU A 561 REMARK 465 GLU A 562 REMARK 465 GLU A 563 REMARK 465 LEU A 564 REMARK 465 LYS A 565 REMARK 465 THR A 566 REMARK 465 HIS A 567 REMARK 465 ILE A 568 REMARK 465 SER A 569 REMARK 465 LYS A 570 REMARK 465 GLY A 571 REMARK 465 THR A 572 REMARK 465 LEU A 573 REMARK 465 GLY A 574 REMARK 465 LYS A 575 REMARK 465 PHE A 576 REMARK 465 THR A 577 REMARK 465 VAL A 578 REMARK 465 PRO A 579 REMARK 465 MET A 580 REMARK 465 LEU A 581 REMARK 465 LYS A 582 REMARK 465 GLU A 583 REMARK 465 ALA A 584 REMARK 465 CYS A 585 REMARK 465 ARG A 586 REMARK 465 ALA A 587 REMARK 465 TYR A 588 REMARK 465 GLY A 589 REMARK 465 LEU A 590 REMARK 465 LYS A 591 REMARK 465 SER A 592 REMARK 465 GLY A 593 REMARK 465 LEU A 594 REMARK 465 LYS A 595 REMARK 465 LYS A 596 REMARK 465 GLN A 597 REMARK 465 GLU A 598 REMARK 465 LEU A 599 REMARK 465 LEU A 600 REMARK 465 GLU A 601 REMARK 465 ALA A 602 REMARK 465 LEU A 603 REMARK 465 THR A 604 REMARK 465 LYS A 605 REMARK 465 HIS A 606 REMARK 465 PHE A 607 REMARK 465 GLN A 608 REMARK 465 ASP A 609 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 ARG B 3 REMARK 465 SER B 4 REMARK 465 GLY B 5 REMARK 465 LYS B 171 REMARK 465 GLU B 172 REMARK 465 ASP B 173 REMARK 465 GLY B 174 REMARK 465 SER B 175 REMARK 465 GLY B 176 REMARK 465 ASP B 177 REMARK 465 ARG B 178 REMARK 465 GLY B 179 REMARK 465 ASP B 180 REMARK 465 ASP B 546 REMARK 465 GLN B 547 REMARK 465 VAL B 548 REMARK 465 THR B 549 REMARK 465 ALA B 550 REMARK 465 GLN B 551 REMARK 465 GLU B 552 REMARK 465 ILE B 553 REMARK 465 PHE B 554 REMARK 465 GLN B 555 REMARK 465 ASP B 556 REMARK 465 ASN B 557 REMARK 465 HIS B 558 REMARK 465 GLU B 559 REMARK 465 ASP B 560 REMARK 465 GLY B 561 REMARK 465 PRO B 562 REMARK 465 THR B 563 REMARK 465 ALA B 564 REMARK 465 LYS B 565 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DG D 4 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 402 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 53 81.83 60.43 REMARK 500 LEU A 143 -37.19 -37.52 REMARK 500 SER A 162 -97.26 -110.13 REMARK 500 ASN A 174 66.07 -152.64 REMARK 500 MET A 203 74.98 -108.16 REMARK 500 PHE A 216 -50.77 -145.24 REMARK 500 ILE A 220 -51.21 -130.11 REMARK 500 SER A 257 143.95 173.97 REMARK 500 THR A 292 -0.29 -148.15 REMARK 500 PHE A 340 -88.85 -132.34 REMARK 500 LYS A 424 21.75 80.45 REMARK 500 SER A 475 -18.25 -50.00 REMARK 500 ASN B 22 103.46 -56.06 REMARK 500 PRO B 25 88.23 -38.91 REMARK 500 ASP B 65 86.97 -150.39 REMARK 500 PRO B 67 37.43 -70.90 REMARK 500 TYR B 74 54.40 31.65 REMARK 500 GLN B 103 -165.14 -109.52 REMARK 500 SER B 191 84.70 -155.22 REMARK 500 PHE B 192 109.61 -47.73 REMARK 500 LEU B 194 4.04 -59.73 REMARK 500 LEU B 268 116.28 -161.59 REMARK 500 ASP B 300 172.43 -54.18 REMARK 500 ASP B 301 63.34 62.01 REMARK 500 GLU B 302 80.25 -53.83 REMARK 500 CYS B 339 162.64 178.68 REMARK 500 PHE B 340 78.01 -156.19 REMARK 500 GLN B 432 55.78 -91.46 REMARK 500 ASN B 440 49.78 -86.85 REMARK 500 LYS B 443 -41.42 -134.21 REMARK 500 GLU B 468 26.98 47.13 REMARK 500 LYS B 469 84.35 18.26 REMARK 500 THR B 470 20.37 -149.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JEQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE KU HETERODIMER DBREF 1JEY A 1 609 UNP P12956 KU70_HUMAN 0 608 DBREF 1JEY B 1 565 UNP P13010 KU86_HUMAN 0 564 DBREF 1JEY C 1 21 PDB 1JEY 1JEY 1 21 DBREF 1JEY D 1 34 PDB 1JEY 1JEY 1 34 SEQRES 1 C 21 DG DT DT DT DT DT DA DG DT DT DT DA DT SEQRES 2 C 21 DT DG DG DG DC DG DC DG SEQRES 1 D 34 DC DG DC DG DC DC DC DA DG DC DT DT DT SEQRES 2 D 34 DC DC DC DA DG DC DT DA DA DT DA DA DA SEQRES 3 D 34 DC DT DA DA DA DA DA DC SEQRES 1 A 609 MET SER GLY TRP GLU SER TYR TYR LYS THR GLU GLY ASP SEQRES 2 A 609 GLU GLU ALA GLU GLU GLU GLN GLU GLU ASN LEU GLU ALA SEQRES 3 A 609 SER GLY ASP TYR LYS TYR SER GLY ARG ASP SER LEU ILE SEQRES 4 A 609 PHE LEU VAL ASP ALA SER LYS ALA MET PHE GLU SER GLN SEQRES 5 A 609 SER GLU ASP GLU LEU THR PRO PHE ASP MET SER ILE GLN SEQRES 6 A 609 CYS ILE GLN SER VAL TYR ILE SER LYS ILE ILE SER SER SEQRES 7 A 609 ASP ARG ASP LEU LEU ALA VAL VAL PHE TYR GLY THR GLU SEQRES 8 A 609 LYS ASP LYS ASN SER VAL ASN PHE LYS ASN ILE TYR VAL SEQRES 9 A 609 LEU GLN GLU LEU ASP ASN PRO GLY ALA LYS ARG ILE LEU SEQRES 10 A 609 GLU LEU ASP GLN PHE LYS GLY GLN GLN GLY GLN LYS ARG SEQRES 11 A 609 PHE GLN ASP MET MET GLY HIS GLY SER ASP TYR SER LEU SEQRES 12 A 609 SER GLU VAL LEU TRP VAL CYS ALA ASN LEU PHE SER ASP SEQRES 13 A 609 VAL GLN PHE LYS MET SER HIS LYS ARG ILE MET LEU PHE SEQRES 14 A 609 THR ASN GLU ASP ASN PRO HIS GLY ASN ASP SER ALA LYS SEQRES 15 A 609 ALA SER ARG ALA ARG THR LYS ALA GLY ASP LEU ARG ASP SEQRES 16 A 609 THR GLY ILE PHE LEU ASP LEU MET HIS LEU LYS LYS PRO SEQRES 17 A 609 GLY GLY PHE ASP ILE SER LEU PHE TYR ARG ASP ILE ILE SEQRES 18 A 609 SER ILE ALA GLU ASP GLU ASP LEU ARG VAL HIS PHE GLU SEQRES 19 A 609 GLU SER SER LYS LEU GLU ASP LEU LEU ARG LYS VAL ARG SEQRES 20 A 609 ALA LYS GLU THR ARG LYS ARG ALA LEU SER ARG LEU LYS SEQRES 21 A 609 LEU LYS LEU ASN LYS ASP ILE VAL ILE SER VAL GLY ILE SEQRES 22 A 609 TYR ASN LEU VAL GLN LYS ALA LEU LYS PRO PRO PRO ILE SEQRES 23 A 609 LYS LEU TYR ARG GLU THR ASN GLU PRO VAL LYS THR LYS SEQRES 24 A 609 THR ARG THR PHE ASN THR SER THR GLY GLY LEU LEU LEU SEQRES 25 A 609 PRO SER ASP THR LYS ARG SER GLN ILE TYR GLY SER ARG SEQRES 26 A 609 GLN ILE ILE LEU GLU LYS GLU GLU THR GLU GLU LEU LYS SEQRES 27 A 609 ARG PHE ASP ASP PRO GLY LEU MET LEU MET GLY PHE LYS SEQRES 28 A 609 PRO LEU VAL LEU LEU LYS LYS HIS HIS TYR LEU ARG PRO SEQRES 29 A 609 SER LEU PHE VAL TYR PRO GLU GLU SER LEU VAL ILE GLY SEQRES 30 A 609 SER SER THR LEU PHE SER ALA LEU LEU ILE LYS CYS LEU SEQRES 31 A 609 GLU LYS GLU VAL ALA ALA LEU CYS ARG TYR THR PRO ARG SEQRES 32 A 609 ARG ASN ILE PRO PRO TYR PHE VAL ALA LEU VAL PRO GLN SEQRES 33 A 609 GLU GLU GLU LEU ASP ASP GLN LYS ILE GLN VAL THR PRO SEQRES 34 A 609 PRO GLY PHE GLN LEU VAL PHE LEU PRO PHE ALA ASP ASP SEQRES 35 A 609 LYS ARG LYS MET PRO PHE THR GLU LYS ILE MET ALA THR SEQRES 36 A 609 PRO GLU GLN VAL GLY LYS MET LYS ALA ILE VAL GLU LYS SEQRES 37 A 609 LEU ARG PHE THR TYR ARG SER ASP SER PHE GLU ASN PRO SEQRES 38 A 609 VAL LEU GLN GLN HIS PHE ARG ASN LEU GLU ALA LEU ALA SEQRES 39 A 609 LEU ASP LEU MET GLU PRO GLU GLN ALA VAL ASP LEU THR SEQRES 40 A 609 LEU PRO LYS VAL GLU ALA MET ASN LYS ARG LEU GLY SER SEQRES 41 A 609 LEU VAL ASP GLU PHE LYS GLU LEU VAL TYR PRO PRO ASP SEQRES 42 A 609 TYR ASN PRO GLU GLY LYS VAL THR LYS ARG LYS HIS ASP SEQRES 43 A 609 ASN GLU GLY SER GLY SER LYS ARG PRO LYS VAL GLU TYR SEQRES 44 A 609 SER GLU GLU GLU LEU LYS THR HIS ILE SER LYS GLY THR SEQRES 45 A 609 LEU GLY LYS PHE THR VAL PRO MET LEU LYS GLU ALA CYS SEQRES 46 A 609 ARG ALA TYR GLY LEU LYS SER GLY LEU LYS LYS GLN GLU SEQRES 47 A 609 LEU LEU GLU ALA LEU THR LYS HIS PHE GLN ASP SEQRES 1 B 565 MET VAL ARG SER GLY ASN LYS ALA ALA VAL VAL LEU CYS SEQRES 2 B 565 MET ASP VAL GLY PHE THR MET SER ASN SER ILE PRO GLY SEQRES 3 B 565 ILE GLU SER PRO PHE GLU GLN ALA LYS LYS VAL ILE THR SEQRES 4 B 565 MET PHE VAL GLN ARG GLN VAL PHE ALA GLU ASN LYS ASP SEQRES 5 B 565 GLU ILE ALA LEU VAL LEU PHE GLY THR ASP GLY THR ASP SEQRES 6 B 565 ASN PRO LEU SER GLY GLY ASP GLN TYR GLN ASN ILE THR SEQRES 7 B 565 VAL HIS ARG HIS LEU MET LEU PRO ASP PHE ASP LEU LEU SEQRES 8 B 565 GLU ASP ILE GLU SER LYS ILE GLN PRO GLY SER GLN GLN SEQRES 9 B 565 ALA ASP PHE LEU ASP ALA LEU ILE VAL SER MET ASP VAL SEQRES 10 B 565 ILE GLN HIS GLU THR ILE GLY LYS LYS PHE GLU LYS ARG SEQRES 11 B 565 HIS ILE GLU ILE PHE THR ASP LEU SER SER ARG PHE SER SEQRES 12 B 565 LYS SER GLN LEU ASP ILE ILE ILE HIS SER LEU LYS LYS SEQRES 13 B 565 CYS ASP ILE SER LEU GLN PHE PHE LEU PRO PHE SER LEU SEQRES 14 B 565 GLY LYS GLU ASP GLY SER GLY ASP ARG GLY ASP GLY PRO SEQRES 15 B 565 PHE ARG LEU GLY GLY HIS GLY PRO SER PHE PRO LEU LYS SEQRES 16 B 565 GLY ILE THR GLU GLN GLN LYS GLU GLY LEU GLU ILE VAL SEQRES 17 B 565 LYS MET VAL MET ILE SER LEU GLU GLY GLU ASP GLY LEU SEQRES 18 B 565 ASP GLU ILE TYR SER PHE SER GLU SER LEU ARG LYS LEU SEQRES 19 B 565 CYS VAL PHE LYS LYS ILE GLU ARG HIS SER ILE HIS TRP SEQRES 20 B 565 PRO CYS ARG LEU THR ILE GLY SER ASN LEU SER ILE ARG SEQRES 21 B 565 ILE ALA ALA TYR LYS SER ILE LEU GLN GLU ARG VAL LYS SEQRES 22 B 565 LYS THR TRP THR VAL VAL ASP ALA LYS THR LEU LYS LYS SEQRES 23 B 565 GLU ASP ILE GLN LYS GLU THR VAL TYR CYS LEU ASN ASP SEQRES 24 B 565 ASP ASP GLU THR GLU VAL LEU LYS GLU ASP ILE ILE GLN SEQRES 25 B 565 GLY PHE ARG TYR GLY SER ASP ILE VAL PRO PHE SER LYS SEQRES 26 B 565 VAL ASP GLU GLU GLN MET LYS TYR LYS SER GLU GLY LYS SEQRES 27 B 565 CYS PHE SER VAL LEU GLY PHE CYS LYS SER SER GLN VAL SEQRES 28 B 565 GLN ARG ARG PHE PHE MET GLY ASN GLN VAL LEU LYS VAL SEQRES 29 B 565 PHE ALA ALA ARG ASP ASP GLU ALA ALA ALA VAL ALA LEU SEQRES 30 B 565 SER SER LEU ILE HIS ALA LEU ASP ASP LEU ASP MET VAL SEQRES 31 B 565 ALA ILE VAL ARG TYR ALA TYR ASP LYS ARG ALA ASN PRO SEQRES 32 B 565 GLN VAL GLY VAL ALA PHE PRO HIS ILE LYS HIS ASN TYR SEQRES 33 B 565 GLU CYS LEU VAL TYR VAL GLN LEU PRO PHE MET GLU ASP SEQRES 34 B 565 LEU ARG GLN TYR MET PHE SER SER LEU LYS ASN SER LYS SEQRES 35 B 565 LYS TYR ALA PRO THR GLU ALA GLN LEU ASN ALA VAL ASP SEQRES 36 B 565 ALA LEU ILE ASP SER MET SER LEU ALA LYS LYS ASP GLU SEQRES 37 B 565 LYS THR ASP THR LEU GLU ASP LEU PHE PRO THR THR LYS SEQRES 38 B 565 ILE PRO ASN PRO ARG PHE GLN ARG LEU PHE GLN CYS LEU SEQRES 39 B 565 LEU HIS ARG ALA LEU HIS PRO ARG GLU PRO LEU PRO PRO SEQRES 40 B 565 ILE GLN GLN HIS ILE TRP ASN MET LEU ASN PRO PRO ALA SEQRES 41 B 565 GLU VAL THR THR LYS SER GLN ILE PRO LEU SER LYS ILE SEQRES 42 B 565 LYS THR LEU PHE PRO LEU ILE GLU ALA LYS LYS LYS ASP SEQRES 43 B 565 GLN VAL THR ALA GLN GLU ILE PHE GLN ASP ASN HIS GLU SEQRES 44 B 565 ASP GLY PRO THR ALA LYS FORMUL 5 HOH *255(H2 O) HELIX 1 1 SER A 45 GLU A 50 5 6 HELIX 2 2 THR A 58 SER A 77 1 20 HELIX 3 3 GLY A 112 GLN A 121 1 10 HELIX 4 4 LYS A 123 GLY A 136 1 14 HELIX 5 5 SER A 142 ASP A 156 1 15 HELIX 6 6 ASP A 179 GLY A 197 1 19 HELIX 7 7 PHE A 216 ILE A 220 5 5 HELIX 8 8 LYS A 238 THR A 251 1 14 HELIX 9 9 LEU A 312 SER A 314 5 3 HELIX 10 10 GLU A 330 LEU A 337 1 8 HELIX 11 11 VAL A 354 LEU A 356 5 3 HELIX 12 12 LYS A 357 TYR A 361 5 5 HELIX 13 13 GLY A 377 LYS A 392 1 16 HELIX 14 14 PHE A 439 ASP A 442 5 4 HELIX 15 15 THR A 455 LEU A 469 1 15 HELIX 16 16 ASN A 480 LEU A 495 1 16 HELIX 17 17 LYS A 510 GLY A 519 1 10 HELIX 18 18 SER A 520 TYR A 530 1 11 HELIX 19 19 GLY B 17 ASN B 22 5 6 HELIX 20 20 SER B 29 ALA B 48 1 20 HELIX 21 21 ASP B 87 SER B 96 1 10 HELIX 22 22 ASP B 106 THR B 122 1 17 HELIX 23 23 GLN B 146 CYS B 157 1 12 HELIX 24 24 THR B 198 GLY B 217 1 20 HELIX 25 25 GLU B 218 ASP B 222 5 5 HELIX 26 26 PHE B 227 LEU B 231 1 5 HELIX 27 27 PHE B 237 GLU B 241 5 5 HELIX 28 28 LEU B 306 GLU B 308 5 3 HELIX 29 29 SER B 324 LYS B 332 1 9 HELIX 30 30 SER B 349 VAL B 351 5 3 HELIX 31 31 GLN B 352 PHE B 356 5 5 HELIX 32 32 ASP B 370 LEU B 387 1 18 HELIX 33 33 PHE B 426 ASP B 429 5 4 HELIX 34 34 THR B 447 MET B 461 1 15 HELIX 35 35 PRO B 478 ILE B 482 5 5 HELIX 36 36 ASN B 484 HIS B 500 1 17 HELIX 37 37 GLN B 509 ASN B 517 1 9 HELIX 38 38 PRO B 519 PHE B 537 1 19 SHEET 1 A 5 ILE A 102 ASP A 109 0 SHEET 2 A 5 LEU A 82 TYR A 88 -1 N LEU A 83 O ASP A 109 SHEET 3 A 5 ARG A 35 ASP A 43 1 O ASP A 36 N LEU A 82 SHEET 4 A 5 MET A 161 THR A 170 1 N SER A 162 O ARG A 35 SHEET 5 A 5 ILE A 198 HIS A 204 1 O PHE A 199 N ILE A 166 SHEET 1 B 8 SER A 257 LYS A 262 0 SHEET 2 B 8 VAL A 268 TYR A 274 -1 O ILE A 269 N LEU A 261 SHEET 3 B 8 LEU A 366 PRO A 370 -1 N PHE A 367 O TYR A 274 SHEET 4 B 8 GLY A 431 PHE A 436 -1 O PHE A 432 N VAL A 368 SHEET 5 B 8 TYR A 409 GLN A 416 -1 N ALA A 412 O VAL A 435 SHEET 6 B 8 VAL A 394 THR A 401 -1 O ALA A 396 N LEU A 413 SHEET 7 B 8 GLY A 344 PRO A 352 -1 N GLY A 344 O THR A 401 SHEET 8 B 8 SER A 257 LYS A 262 1 O LYS A 260 N LEU A 345 SHEET 1 C 3 ILE A 286 TYR A 289 0 SHEET 2 C 3 ILE B 310 TYR B 316 -1 O ILE B 311 N LEU A 288 SHEET 3 C 3 ASP B 319 PRO B 322 -1 N ASP B 319 O TYR B 316 SHEET 1 D 3 VAL A 296 ASN A 304 0 SHEET 2 D 3 ILE B 289 LEU B 297 -1 O GLN B 290 N PHE A 303 SHEET 3 D 3 GLU B 304 VAL B 305 -1 N VAL B 305 O TYR B 295 SHEET 1 E 3 ARG A 325 LEU A 329 0 SHEET 2 E 3 THR A 316 TYR A 322 -1 N ARG A 318 O LEU A 329 SHEET 3 E 3 THR B 277 ASP B 280 -1 N THR B 277 O SER A 319 SHEET 1 F 2 VAL A 375 ILE A 376 0 SHEET 2 F 2 ILE B 540 GLU B 541 -1 O ILE B 540 N ILE A 376 SHEET 1 G 2 GLU A 419 LEU A 420 0 SHEET 2 G 2 GLN A 426 THR A 428 -1 N VAL A 427 O GLU A 419 SHEET 1 H 6 ILE B 77 MET B 84 0 SHEET 2 H 6 GLU B 53 PHE B 59 -1 N ILE B 54 O MET B 84 SHEET 3 H 6 ALA B 8 ASP B 15 1 O ALA B 8 N GLU B 53 SHEET 4 H 6 LYS B 129 PHE B 135 1 O LYS B 129 N ALA B 9 SHEET 5 H 6 ILE B 159 LEU B 165 1 N SER B 160 O ARG B 130 SHEET 6 H 6 ILE B 224 SER B 226 1 O TYR B 225 N LEU B 165 SHEET 1 I 8 TRP B 247 ILE B 253 0 SHEET 2 I 8 LEU B 257 ILE B 267 -1 O LEU B 257 N ILE B 253 SHEET 3 I 8 MET B 357 ALA B 366 -1 O VAL B 361 N SER B 266 SHEET 4 I 8 GLU B 417 GLN B 423 -1 O LEU B 419 N VAL B 364 SHEET 5 I 8 GLN B 404 ILE B 412 -1 N VAL B 407 O VAL B 422 SHEET 6 I 8 MET B 389 ALA B 396 -1 O ALA B 391 N ALA B 408 SHEET 7 I 8 CYS B 339 LYS B 347 -1 O CYS B 339 N ALA B 396 SHEET 8 I 8 TRP B 247 ILE B 253 1 O ARG B 250 N PHE B 340 SHEET 1 J 2 ALA B 464 LYS B 465 0 SHEET 2 J 2 GLU B 474 ASP B 475 -1 N GLU B 474 O LYS B 465 CRYST1 83.920 126.305 126.436 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011916 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007917 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007909 0.00000