HEADER OXIDOREDUCTASE 20-JUN-01 1JFC TITLE X-RAY STRUCTURE OF NITRIC OXIDE REDUCTASE (CYTOCHROME P450NOR) IN THE TITLE 2 FERROUS CO STATE AT ATOMIC RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITRIC-OXIDE REDUCTASE CYTOCHROME P450 55A1; COMPND 3 CHAIN: A; COMPND 4 EC: 1.7.99.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FUSARIUM OXYSPORUM; SOURCE 3 ORGANISM_TAXID: 5507; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PRSET-C KEYWDS NITRIC OXIDE REDUCTASE, CYTOCHROME P450NOR, ATOMIC RESOLUTION, CARBON KEYWDS 2 MONOXIDE, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 3 STRUCTURAL GENOMICS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.SHIMIZU,S.ADACHI,S.Y.PARK,Y.SHIRO,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 7 13-MAR-24 1JFC 1 REMARK LINK REVDAT 6 13-JUL-11 1JFC 1 VERSN REVDAT 5 24-FEB-09 1JFC 1 VERSN REVDAT 4 25-DEC-02 1JFC 1 REMARK REVDAT 3 01-MAY-02 1JFC 1 REMARK REVDAT 2 16-JAN-02 1JFC 1 JRNL REVDAT 1 20-DEC-01 1JFC 0 JRNL AUTH H.SHIMIZU,S.Y.PARK,Y.SHIRO,S.ADACHI JRNL TITL X-RAY STRUCTURE OF NITRIC OXIDE REDUCTASE (CYTOCHROME JRNL TITL 2 P450NOR) AT ATOMIC RESOLUTION. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 58 81 2002 JRNL REFN ISSN 0907-4449 JRNL PMID 11752781 JRNL DOI 10.1107/S0907444901017383 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.Y.PARK,H.SHIMIZU,S.ADACHI,A.NAKAGAWA,I.TANAKA,K.NAKAHARA, REMARK 1 AUTH 2 H.SHOUN,E.OBAYASHI,H.NAKAMURA,T.IIZUKA,Y.SHIRO REMARK 1 TITL CRYSTAL STRUCTURE OF NITRIC OXIDE REDUCTASE FROM REMARK 1 TITL 2 DENITRIFYING FUNGUS FUSARIUM OXYSPORUM REMARK 1 REF NAT.STRUCT.BIOL. V. 4 827 1997 REMARK 1 REFN ISSN 1072-8368 REMARK 1 REFERENCE 2 REMARK 1 AUTH H.SHIMIZU,E.OBAYASHI,Y.GOMI,H.ARAKAWA,S.Y.PARK,H.NAKAMURA, REMARK 1 AUTH 2 S.ADACHI,H.SHOUN,Y.SHIRO REMARK 1 TITL PROTON DELIVERY IN NO REDUCTION BY FUNGAL NITRIC-OXIDE REMARK 1 TITL 2 REDUCTASE. CRYOGENIC CRYSTALLOGRAPHY, SPECTROSCOPY, AND REMARK 1 TITL 3 KINETICS OF FERRIC-NO COMPLEXES OF WILD- TYPE AND MUTANT REMARK 1 TITL 4 ENZYMES REMARK 1 REF J.BIOL.CHEM. V. 275 4816 2000 REMARK 1 REFN ISSN 0021-9258 REMARK 1 DOI 10.1074/JBC.275.7.4816 REMARK 2 REMARK 2 RESOLUTION. 1.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.117 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.152 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 8716 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 175082 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3099 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 892 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 ANGLE DISTANCES (A) : 0.031 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : NULL REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JFC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-JUL-01. REMARK 100 THE DEPOSITION ID IS D_1000013705. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.7 REMARK 200 MONOCHROMATOR : SI(111) FLAT REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 175256 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.000 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.31700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, MES, GLYCEROL, PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.43300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.89900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.12350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.89900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.43300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.12350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 268 HG SER A 270 1.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 5 N ALA A 5 CA 0.396 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 5 N - CA - CB ANGL. DEV. = 13.0 DEGREES REMARK 500 PHE A 22 CD1 - CE1 - CZ ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG A 26 NE - CZ - NH2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG A 66 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 119 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 119 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 119 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 MET A 128 CA - CB - CG ANGL. DEV. = 12.7 DEGREES REMARK 500 ARG A 174 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 174 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 TYR A 194 CB - CG - CD2 ANGL. DEV. = 3.8 DEGREES REMARK 500 TYR A 194 CG - CD2 - CE2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 208 CB - CA - C ANGL. DEV. = 13.1 DEGREES REMARK 500 ASP A 225 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 260 CB - CG - OD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 GLN A 261 CA - CB - CG ANGL. DEV. = 19.2 DEGREES REMARK 500 GLN A 261 CA - CB - CG ANGL. DEV. = 19.6 DEGREES REMARK 500 ARG A 292 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 THR A 293 CA - CB - CG2 ANGL. DEV. = -9.1 DEGREES REMARK 500 ARG A 306 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 306 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 320 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 320 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 349 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 392 CD - NE - CZ ANGL. DEV. = 17.4 DEGREES REMARK 500 ARG A 392 NE - CZ - NH2 ANGL. DEV. = 4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 29 59.76 -157.86 REMARK 500 ASN A 29 68.93 -163.34 REMARK 500 CYS A 133 32.10 -144.46 REMARK 500 PHE A 144 -60.02 -149.26 REMARK 500 ASP A 208 78.09 -103.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 352 SG REMARK 620 2 HEM A 501 NA 96.1 REMARK 620 3 HEM A 501 NB 91.8 90.5 REMARK 620 4 HEM A 501 NC 86.7 177.2 88.8 REMARK 620 5 HEM A 501 ND 92.2 90.2 175.8 90.3 REMARK 620 6 CMO A 502 C 176.6 83.4 84.8 93.8 91.1 REMARK 620 7 CMO A 502 O 173.7 81.8 82.3 95.4 93.7 3.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 352 SG REMARK 620 2 HEM A 501 NA 96.0 REMARK 620 3 HEM A 501 NB 91.8 90.5 REMARK 620 4 HEM A 501 NC 86.7 177.2 88.8 REMARK 620 5 HEM A 501 ND 92.2 90.2 175.9 90.3 REMARK 620 6 CMO A 502 C 176.6 83.4 84.9 93.9 91.2 REMARK 620 7 CMO A 502 O 173.7 81.8 82.3 95.4 93.7 3.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JFB RELATED DB: PDB REMARK 900 1JFB CONTAINS THE SAME PROTEIN IN THE FERRIC RESTING STATE AT REMARK 900 ATOMIC RESOLUTION. REMARK 900 RELATED ID: MY_001000027.2 RELATED DB: TARGETDB DBREF 1JFC A 0 403 UNP P23295 NOR_FUSOX 1 404 SEQRES 1 A 404 THR MET ALA SER GLY ALA PRO SER PHE PRO PHE SER ARG SEQRES 2 A 404 ALA SER GLY PRO GLU PRO PRO ALA GLU PHE ALA LYS LEU SEQRES 3 A 404 ARG ALA THR ASN PRO VAL SER GLN VAL LYS LEU PHE ASP SEQRES 4 A 404 GLY SER LEU ALA TRP LEU VAL THR LYS HIS LYS ASP VAL SEQRES 5 A 404 CYS PHE VAL ALA THR SER GLU LYS LEU SER LYS VAL ARG SEQRES 6 A 404 THR ARG GLN GLY PHE PRO GLU LEU SER ALA SER GLY LYS SEQRES 7 A 404 GLN ALA ALA LYS ALA LYS PRO THR PHE VAL ASP MET ASP SEQRES 8 A 404 PRO PRO GLU HIS MET HIS GLN ARG SER MET VAL GLU PRO SEQRES 9 A 404 THR PHE THR PRO GLU ALA VAL LYS ASN LEU GLN PRO TYR SEQRES 10 A 404 ILE GLN ARG THR VAL ASP ASP LEU LEU GLU GLN MET LYS SEQRES 11 A 404 GLN LYS GLY CYS ALA ASN GLY PRO VAL ASP LEU VAL LYS SEQRES 12 A 404 GLU PHE ALA LEU PRO VAL PRO SER TYR ILE ILE TYR THR SEQRES 13 A 404 LEU LEU GLY VAL PRO PHE ASN ASP LEU GLU TYR LEU THR SEQRES 14 A 404 GLN GLN ASN ALA ILE ARG THR ASN GLY SER SER THR ALA SEQRES 15 A 404 ARG GLU ALA SER ALA ALA ASN GLN GLU LEU LEU ASP TYR SEQRES 16 A 404 LEU ALA ILE LEU VAL GLU GLN ARG LEU VAL GLU PRO LYS SEQRES 17 A 404 ASP ASP ILE ILE SER LYS LEU CYS THR GLU GLN VAL LYS SEQRES 18 A 404 PRO GLY ASN ILE ASP LYS SER ASP ALA VAL GLN ILE ALA SEQRES 19 A 404 PHE LEU LEU LEU VAL ALA GLY ASN ALA THR MET VAL ASN SEQRES 20 A 404 MET ILE ALA LEU GLY VAL ALA THR LEU ALA GLN HIS PRO SEQRES 21 A 404 ASP GLN LEU ALA GLN LEU LYS ALA ASN PRO SER LEU ALA SEQRES 22 A 404 PRO GLN PHE VAL GLU GLU LEU CYS ARG TYR HIS THR ALA SEQRES 23 A 404 SER ALA LEU ALA ILE LYS ARG THR ALA LYS GLU ASP VAL SEQRES 24 A 404 MET ILE GLY ASP LYS LEU VAL ARG ALA ASN GLU GLY ILE SEQRES 25 A 404 ILE ALA SER ASN GLN SER ALA ASN ARG ASP GLU GLU VAL SEQRES 26 A 404 PHE GLU ASN PRO ASP GLU PHE ASN MET ASN ARG LYS TRP SEQRES 27 A 404 PRO PRO GLN ASP PRO LEU GLY PHE GLY PHE GLY ASP HIS SEQRES 28 A 404 ARG CYS ILE ALA GLU HIS LEU ALA LYS ALA GLU LEU THR SEQRES 29 A 404 THR VAL PHE SER THR LEU TYR GLN LYS PHE PRO ASP LEU SEQRES 30 A 404 LYS VAL ALA VAL PRO LEU GLY LYS ILE ASN TYR THR PRO SEQRES 31 A 404 LEU ASN ARG ASP VAL GLY ILE VAL ASP LEU PRO VAL ILE SEQRES 32 A 404 PHE HET HEM A 501 146 HET CMO A 502 2 HET GOL A 503 6 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CMO CARBON MONOXIDE HETNAM GOL GLYCEROL HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 CMO C O FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *892(H2 O) HELIX 1 1 ALA A 20 ASN A 29 1 10 HELIX 2 2 LYS A 47 SER A 57 1 11 HELIX 3 3 SER A 73 ALA A 80 1 8 HELIX 4 4 THR A 85 MET A 89 5 5 HELIX 5 5 PRO A 92 SER A 99 1 8 HELIX 6 6 MET A 100 PHE A 105 5 6 HELIX 7 7 THR A 106 GLY A 132 1 27 HELIX 8 8 LEU A 140 PHE A 144 1 5 HELIX 9 9 LEU A 146 GLY A 158 1 13 HELIX 10 10 PRO A 160 ASN A 162 5 3 HELIX 11 11 ASP A 163 ASN A 176 1 14 HELIX 12 12 THR A 180 GLU A 205 1 26 HELIX 13 13 ASP A 209 GLN A 218 1 10 HELIX 14 14 ASP A 225 HIS A 258 1 34 HELIX 15 15 HIS A 258 ASN A 268 1 11 HELIX 16 16 LEU A 271 HIS A 283 1 13 HELIX 17 17 SER A 314 ASN A 319 1 6 HELIX 18 18 PHE A 347 ARG A 351 5 5 HELIX 19 19 ALA A 354 PHE A 373 1 20 HELIX 20 20 PRO A 381 ILE A 385 5 5 SHEET 1 A 5 VAL A 31 LYS A 35 0 SHEET 2 A 5 LEU A 41 VAL A 45 -1 O ALA A 42 N VAL A 34 SHEET 3 A 5 GLY A 310 ALA A 313 1 O GLY A 310 N TRP A 43 SHEET 4 A 5 LYS A 291 ALA A 294 -1 O ARG A 292 N ILE A 311 SHEET 5 A 5 LEU A 60 SER A 61 -1 N SER A 61 O THR A 293 SHEET 1 B 3 VAL A 138 ASP A 139 0 SHEET 2 B 3 PRO A 400 ILE A 402 -1 N VAL A 401 O VAL A 138 SHEET 3 B 3 LYS A 377 VAL A 378 -1 N LYS A 377 O ILE A 402 SHEET 1 C 2 VAL A 298 ILE A 300 0 SHEET 2 C 2 LYS A 303 VAL A 305 -1 O LYS A 303 N ILE A 300 SHEET 1 D 2 ASN A 386 TYR A 387 0 SHEET 2 D 2 ILE A 396 ASP A 398 -1 N VAL A 397 O ASN A 386 LINK SG CYS A 352 FE AHEM A 501 1555 1555 2.39 LINK SG CYS A 352 FE BHEM A 501 1555 1555 2.40 LINK FE AHEM A 501 C CMO A 502 1555 1555 1.82 LINK FE BHEM A 501 C CMO A 502 1555 1555 1.82 LINK FE AHEM A 501 O CMO A 502 1555 1555 2.97 LINK FE BHEM A 501 O CMO A 502 1555 1555 2.97 CISPEP 1 PHE A 8 PRO A 9 0 6.43 CISPEP 2 PRO A 91 PRO A 92 0 -2.16 SITE 1 AC1 23 PHE A 86 VAL A 87 HIS A 94 ARG A 98 SITE 2 AC1 23 ILE A 153 LEU A 236 ALA A 239 GLY A 240 SITE 3 AC1 23 THR A 243 MET A 244 MET A 247 SER A 286 SITE 4 AC1 23 GLY A 344 PHE A 345 GLY A 346 PHE A 347 SITE 5 AC1 23 HIS A 350 CYS A 352 ALA A 354 CMO A 502 SITE 6 AC1 23 HOH A 603 HOH A 614 HOH A 617 SITE 1 AC2 4 ALA A 239 GLY A 240 HEM A 501 HOH A1347 SITE 1 AC3 9 ALA A 55 MET A 89 ASP A 90 ARG A 292 SITE 2 AC3 9 HIS A 350 HOH A 607 HOH A 639 HOH A 676 SITE 3 AC3 9 HOH A1316 CRYST1 54.866 82.247 85.798 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018226 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012158 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011655 0.00000