HEADER HYDROLASE 26-JUN-01 1JGT TITLE CRYSTAL STRUCTURE OF BETA-LACTAM SYNTHETASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAM SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES CLAVULIGERUS; SOURCE 3 ORGANISM_TAXID: 1901; SOURCE 4 GENE: 1901; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24A(+) KEYWDS BETA-LACTAM SYNTHETASE, ASPARAGINE SYNTHETASE, CLAVULANIC ACID, KEYWDS 2 AMPCPP, CEA, CARBOXYETHYLARGININE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.T.MILLER,B.O.BACHMANN,C.A.TOWNSEND,A.C.ROSENZWEIG REVDAT 8 07-FEB-24 1JGT 1 REMARK LINK REVDAT 7 04-OCT-17 1JGT 1 REMARK REVDAT 6 13-JUL-11 1JGT 1 VERSN REVDAT 5 24-FEB-09 1JGT 1 VERSN REVDAT 4 01-APR-03 1JGT 1 JRNL REVDAT 3 06-FEB-02 1JGT 1 DBREF REVDAT 2 30-JAN-02 1JGT 1 ATOM REVDAT 1 28-DEC-01 1JGT 0 JRNL AUTH M.T.MILLER,B.O.BACHMANN,C.A.TOWNSEND,A.C.ROSENZWEIG JRNL TITL STRUCTURE OF BETA-LACTAM SYNTHETASE REVEALS HOW TO JRNL TITL 2 SYNTHESIZE ANTIBIOTICS INSTEAD OF ASPARAGINE. JRNL REF NAT.STRUCT.BIOL. V. 8 684 2001 JRNL REFN ISSN 1072-8368 JRNL PMID 11473258 JRNL DOI 10.1038/90394 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 66146 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.800 REMARK 3 FREE R VALUE TEST SET COUNT : 5838 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7075 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 614 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7439 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 128 REMARK 3 SOLVENT ATOMS : 622 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.39000 REMARK 3 B22 (A**2) : 11.08000 REMARK 3 B33 (A**2) : -4.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.27000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.22 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.19 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : CNS BULK SOLVENT MODEL USED REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 55.14 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : BLS_NEW5.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 3 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : BLS_NEW4.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JGT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-01. REMARK 100 THE DEPOSITION ID IS D_1000013754. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 5ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68300 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 19.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.19400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.23000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POLYETHYLENEGLYCOL 4000, GLYCEROL, REMARK 280 TRIS, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.93650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ALA A 3 REMARK 465 GLY A 21 REMARK 465 ARG A 22 REMARK 465 ALA A 23 REMARK 465 PRO A 24 REMARK 465 ARG A 165 REMARK 465 ASP A 166 REMARK 465 GLY A 445 REMARK 465 VAL A 446 REMARK 465 HIS A 447 REMARK 465 GLU A 448 REMARK 465 GLY A 449 REMARK 465 SER A 450 REMARK 465 GLY A 451 REMARK 465 THR A 452 REMARK 465 THR A 453 REMARK 465 ALA A 509 REMARK 465 ARG A 510 REMARK 465 GLY A 511 REMARK 465 ALA A 512 REMARK 465 ALA A 513 REMARK 465 MET B 1 REMARK 465 ARG B 22 REMARK 465 ALA B 23 REMARK 465 GLY B 445 REMARK 465 VAL B 446 REMARK 465 HIS B 447 REMARK 465 GLU B 448 REMARK 465 GLY B 449 REMARK 465 ALA B 509 REMARK 465 ARG B 510 REMARK 465 GLY B 511 REMARK 465 ALA B 512 REMARK 465 ALA B 513 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 444 CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 CMA A 803 O HOH A 955 1.95 REMARK 500 O2A APC A 801 O2 CMA A 803 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 17 -98.87 -144.97 REMARK 500 THR A 18 -46.67 -141.95 REMARK 500 ALA A 91 -141.29 37.66 REMARK 500 PRO A 93 90.78 -65.34 REMARK 500 ASP A 110 -147.71 55.68 REMARK 500 ALA A 163 9.71 -67.88 REMARK 500 PHE A 170 162.09 -46.65 REMARK 500 ARG A 292 76.09 52.52 REMARK 500 VAL A 465 132.20 179.94 REMARK 500 ASP A 468 -5.83 66.79 REMARK 500 ASP A 506 44.88 -74.70 REMARK 500 SER B 55 -11.68 81.95 REMARK 500 PRO B 58 21.35 -78.53 REMARK 500 ASN B 81 57.85 -94.95 REMARK 500 PRO B 90 -144.53 -54.54 REMARK 500 ASP B 110 -143.99 56.94 REMARK 500 ASP B 166 83.00 38.32 REMARK 500 ASP B 174 -18.58 70.46 REMARK 500 HIS B 419 28.18 48.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 253 OD2 REMARK 620 2 ASP A 351 OD1 100.7 REMARK 620 3 APC A 801 O1G 82.8 92.1 REMARK 620 4 APC A 801 O2B 84.1 174.3 85.4 REMARK 620 5 APC A 801 O1A 161.8 90.6 82.6 84.0 REMARK 620 6 HOH A 922 O 90.9 98.1 168.9 84.8 101.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 253 OD1 REMARK 620 2 ASP B 351 OD1 99.1 REMARK 620 3 APC B 802 O2G 90.5 89.3 REMARK 620 4 APC B 802 O1A 173.2 87.0 92.7 REMARK 620 5 APC B 802 O2B 88.2 171.6 95.0 85.5 REMARK 620 6 HOH B 986 O 67.5 84.4 155.7 110.3 94.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APC A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMA A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APC B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMA B 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 711 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 712 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 713 DBREF 1JGT A 1 513 UNP Q9R8E3 BLS_STRCL 1 513 DBREF 1JGT B 1 513 UNP Q9R8E3 BLS_STRCL 1 513 SEQRES 1 A 513 MET GLY ALA PRO VAL LEU PRO ALA ALA PHE GLY PHE LEU SEQRES 2 A 513 ALA SER ALA ARG THR GLY GLY GLY ARG ALA PRO GLY PRO SEQRES 3 A 513 VAL PHE ALA THR ARG GLY SER HIS THR ASP ILE ASP THR SEQRES 4 A 513 PRO GLN GLY GLU ARG SER LEU ALA ALA THR LEU VAL HIS SEQRES 5 A 513 ALA PRO SER VAL ALA PRO ASP ARG ALA VAL ALA ARG SER SEQRES 6 A 513 LEU THR GLY ALA PRO THR THR ALA VAL LEU ALA GLY GLU SEQRES 7 A 513 ILE TYR ASN ARG ASP GLU LEU LEU SER VAL LEU PRO ALA SEQRES 8 A 513 GLY PRO ALA PRO GLU GLY ASP ALA GLU LEU VAL LEU ARG SEQRES 9 A 513 LEU LEU GLU ARG TYR ASP LEU HIS ALA PHE ARG LEU VAL SEQRES 10 A 513 ASN GLY ARG PHE ALA THR VAL VAL ARG THR GLY ASP ARG SEQRES 11 A 513 VAL LEU LEU ALA THR ASP HIS ALA GLY SER VAL PRO LEU SEQRES 12 A 513 TYR THR CYS VAL ALA PRO GLY GLU VAL ARG ALA SER THR SEQRES 13 A 513 GLU ALA LYS ALA LEU ALA ALA HIS ARG ASP PRO LYS GLY SEQRES 14 A 513 PHE PRO LEU ALA ASP ALA ARG ARG VAL ALA GLY LEU THR SEQRES 15 A 513 GLY VAL TYR GLN VAL PRO ALA GLY ALA VAL MET ASP ILE SEQRES 16 A 513 ASP LEU GLY SER GLY THR ALA VAL THR HIS ARG THR TRP SEQRES 17 A 513 THR PRO GLY LEU SER ARG ARG ILE LEU PRO GLU GLY GLU SEQRES 18 A 513 ALA VAL ALA ALA VAL ARG ALA ALA LEU GLU LYS ALA VAL SEQRES 19 A 513 ALA GLN ARG VAL THR PRO GLY ASP THR PRO LEU VAL VAL SEQRES 20 A 513 LEU SER GLY GLY ILE ASP SER SER GLY VAL ALA ALA CYS SEQRES 21 A 513 ALA HIS ARG ALA ALA GLY GLU LEU ASP THR VAL SER MET SEQRES 22 A 513 GLY THR ASP THR SER ASN GLU PHE ARG GLU ALA ARG ALA SEQRES 23 A 513 VAL VAL ASP HIS LEU ARG THR ARG HIS ARG GLU ILE THR SEQRES 24 A 513 ILE PRO THR THR GLU LEU LEU ALA GLN LEU PRO TYR ALA SEQRES 25 A 513 VAL TRP ALA SER GLU SER VAL ASP PRO ASP ILE ILE GLU SEQRES 26 A 513 TYR LEU LEU PRO LEU THR ALA LEU TYR ARG ALA LEU ASP SEQRES 27 A 513 GLY PRO GLU ARG ARG ILE LEU THR GLY TYR GLY ALA ASP SEQRES 28 A 513 ILE PRO LEU GLY GLY MET HIS ARG GLU ASP ARG LEU PRO SEQRES 29 A 513 ALA LEU ASP THR VAL LEU ALA HIS ASP MET ALA THR PHE SEQRES 30 A 513 ASP GLY LEU ASN GLU MET SER PRO VAL LEU SER THR LEU SEQRES 31 A 513 ALA GLY HIS TRP THR THR HIS PRO TYR TRP ASP ARG GLU SEQRES 32 A 513 VAL LEU ASP LEU LEU VAL SER LEU GLU ALA GLY LEU LYS SEQRES 33 A 513 ARG ARG HIS GLY ARG ASP LYS TRP VAL LEU ARG ALA ALA SEQRES 34 A 513 MET ALA ASP ALA LEU PRO ALA GLU THR VAL ASN ARG PRO SEQRES 35 A 513 LYS LEU GLY VAL HIS GLU GLY SER GLY THR THR SER SER SEQRES 36 A 513 PHE SER ARG LEU LEU LEU ASP HIS GLY VAL ALA GLU ASP SEQRES 37 A 513 ARG VAL HIS GLU ALA LYS ARG GLN VAL VAL ARG GLU LEU SEQRES 38 A 513 PHE ASP LEU THR VAL GLY GLY GLY ARG HIS PRO SER GLU SEQRES 39 A 513 VAL ASP THR ASP ASP VAL VAL ARG SER VAL ALA ASP ARG SEQRES 40 A 513 THR ALA ARG GLY ALA ALA SEQRES 1 B 513 MET GLY ALA PRO VAL LEU PRO ALA ALA PHE GLY PHE LEU SEQRES 2 B 513 ALA SER ALA ARG THR GLY GLY GLY ARG ALA PRO GLY PRO SEQRES 3 B 513 VAL PHE ALA THR ARG GLY SER HIS THR ASP ILE ASP THR SEQRES 4 B 513 PRO GLN GLY GLU ARG SER LEU ALA ALA THR LEU VAL HIS SEQRES 5 B 513 ALA PRO SER VAL ALA PRO ASP ARG ALA VAL ALA ARG SER SEQRES 6 B 513 LEU THR GLY ALA PRO THR THR ALA VAL LEU ALA GLY GLU SEQRES 7 B 513 ILE TYR ASN ARG ASP GLU LEU LEU SER VAL LEU PRO ALA SEQRES 8 B 513 GLY PRO ALA PRO GLU GLY ASP ALA GLU LEU VAL LEU ARG SEQRES 9 B 513 LEU LEU GLU ARG TYR ASP LEU HIS ALA PHE ARG LEU VAL SEQRES 10 B 513 ASN GLY ARG PHE ALA THR VAL VAL ARG THR GLY ASP ARG SEQRES 11 B 513 VAL LEU LEU ALA THR ASP HIS ALA GLY SER VAL PRO LEU SEQRES 12 B 513 TYR THR CYS VAL ALA PRO GLY GLU VAL ARG ALA SER THR SEQRES 13 B 513 GLU ALA LYS ALA LEU ALA ALA HIS ARG ASP PRO LYS GLY SEQRES 14 B 513 PHE PRO LEU ALA ASP ALA ARG ARG VAL ALA GLY LEU THR SEQRES 15 B 513 GLY VAL TYR GLN VAL PRO ALA GLY ALA VAL MET ASP ILE SEQRES 16 B 513 ASP LEU GLY SER GLY THR ALA VAL THR HIS ARG THR TRP SEQRES 17 B 513 THR PRO GLY LEU SER ARG ARG ILE LEU PRO GLU GLY GLU SEQRES 18 B 513 ALA VAL ALA ALA VAL ARG ALA ALA LEU GLU LYS ALA VAL SEQRES 19 B 513 ALA GLN ARG VAL THR PRO GLY ASP THR PRO LEU VAL VAL SEQRES 20 B 513 LEU SER GLY GLY ILE ASP SER SER GLY VAL ALA ALA CYS SEQRES 21 B 513 ALA HIS ARG ALA ALA GLY GLU LEU ASP THR VAL SER MET SEQRES 22 B 513 GLY THR ASP THR SER ASN GLU PHE ARG GLU ALA ARG ALA SEQRES 23 B 513 VAL VAL ASP HIS LEU ARG THR ARG HIS ARG GLU ILE THR SEQRES 24 B 513 ILE PRO THR THR GLU LEU LEU ALA GLN LEU PRO TYR ALA SEQRES 25 B 513 VAL TRP ALA SER GLU SER VAL ASP PRO ASP ILE ILE GLU SEQRES 26 B 513 TYR LEU LEU PRO LEU THR ALA LEU TYR ARG ALA LEU ASP SEQRES 27 B 513 GLY PRO GLU ARG ARG ILE LEU THR GLY TYR GLY ALA ASP SEQRES 28 B 513 ILE PRO LEU GLY GLY MET HIS ARG GLU ASP ARG LEU PRO SEQRES 29 B 513 ALA LEU ASP THR VAL LEU ALA HIS ASP MET ALA THR PHE SEQRES 30 B 513 ASP GLY LEU ASN GLU MET SER PRO VAL LEU SER THR LEU SEQRES 31 B 513 ALA GLY HIS TRP THR THR HIS PRO TYR TRP ASP ARG GLU SEQRES 32 B 513 VAL LEU ASP LEU LEU VAL SER LEU GLU ALA GLY LEU LYS SEQRES 33 B 513 ARG ARG HIS GLY ARG ASP LYS TRP VAL LEU ARG ALA ALA SEQRES 34 B 513 MET ALA ASP ALA LEU PRO ALA GLU THR VAL ASN ARG PRO SEQRES 35 B 513 LYS LEU GLY VAL HIS GLU GLY SER GLY THR THR SER SER SEQRES 36 B 513 PHE SER ARG LEU LEU LEU ASP HIS GLY VAL ALA GLU ASP SEQRES 37 B 513 ARG VAL HIS GLU ALA LYS ARG GLN VAL VAL ARG GLU LEU SEQRES 38 B 513 PHE ASP LEU THR VAL GLY GLY GLY ARG HIS PRO SER GLU SEQRES 39 B 513 VAL ASP THR ASP ASP VAL VAL ARG SER VAL ALA ASP ARG SEQRES 40 B 513 THR ALA ARG GLY ALA ALA HET MG A 902 1 HET APC A 801 31 HET CMA A 803 17 HET MG B 901 1 HET APC B 802 31 HET CMA B 804 17 HET GOL B 709 6 HET GOL B 710 6 HET GOL B 711 6 HET GOL B 712 6 HET GOL B 713 6 HETNAM MG MAGNESIUM ION HETNAM APC DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER HETNAM CMA N2-(CARBOXYETHYL)-L-ARGININE HETNAM GOL GLYCEROL HETSYN APC ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MG 2(MG 2+) FORMUL 4 APC 2(C11 H18 N5 O12 P3) FORMUL 5 CMA 2(C9 H18 N4 O4) FORMUL 9 GOL 5(C3 H8 O3) FORMUL 14 HOH *622(H2 O) HELIX 1 1 GLN A 41 SER A 45 5 5 HELIX 2 2 ALA A 57 ARG A 60 5 4 HELIX 3 3 ASN A 81 VAL A 88 1 8 HELIX 4 4 GLY A 97 ASP A 110 1 14 HELIX 5 5 LEU A 111 LEU A 116 5 6 HELIX 6 6 GLU A 157 ALA A 163 1 7 HELIX 7 7 PRO A 218 VAL A 238 1 21 HELIX 8 8 GLY A 251 GLY A 266 1 16 HELIX 9 9 GLU A 280 ARG A 292 1 13 HELIX 10 10 PRO A 301 ALA A 307 1 7 HELIX 11 11 GLN A 308 GLU A 317 1 10 HELIX 12 12 ASP A 320 LEU A 337 1 18 HELIX 13 13 ALA A 350 GLY A 355 1 6 HELIX 14 14 LEU A 363 PHE A 377 1 15 HELIX 15 15 PRO A 385 LEU A 390 1 6 HELIX 16 16 HIS A 397 TRP A 400 5 4 HELIX 17 17 ASP A 401 LEU A 411 1 11 HELIX 18 18 GLU A 412 LYS A 416 1 5 HELIX 19 19 LYS A 423 ALA A 431 1 9 HELIX 20 20 PRO A 435 ARG A 441 1 7 HELIX 21 21 SER A 454 GLY A 464 1 11 HELIX 22 22 ARG A 469 VAL A 486 1 18 HELIX 23 23 HIS A 491 VAL A 495 5 5 HELIX 24 24 ASP A 496 ASP A 506 1 11 HELIX 25 25 GLN B 41 SER B 45 5 5 HELIX 26 26 PRO B 58 ARG B 60 5 3 HELIX 27 27 ASN B 81 SER B 87 1 7 HELIX 28 28 GLY B 97 ASP B 110 1 14 HELIX 29 29 LEU B 111 LEU B 116 5 6 HELIX 30 30 GLU B 157 ALA B 163 1 7 HELIX 31 31 PRO B 218 VAL B 238 1 21 HELIX 32 32 GLY B 251 GLY B 266 1 16 HELIX 33 33 GLU B 280 ARG B 292 1 13 HELIX 34 34 PRO B 301 ALA B 307 1 7 HELIX 35 35 GLN B 308 GLU B 317 1 10 HELIX 36 36 ASP B 320 LEU B 337 1 18 HELIX 37 37 ALA B 350 GLY B 355 1 6 HELIX 38 38 LEU B 363 PHE B 377 1 15 HELIX 39 39 PRO B 385 LEU B 390 1 6 HELIX 40 40 HIS B 397 TRP B 400 5 4 HELIX 41 41 ASP B 401 LEU B 411 1 11 HELIX 42 42 GLU B 412 LYS B 416 1 5 HELIX 43 43 LYS B 423 ALA B 431 1 9 HELIX 44 44 PRO B 435 ASN B 440 1 6 HELIX 45 45 SER B 454 ASP B 462 1 9 HELIX 46 46 ARG B 469 VAL B 486 1 18 HELIX 47 47 HIS B 491 VAL B 495 5 5 HELIX 48 48 ASP B 496 THR B 508 1 13 SHEET 1 A 7 SER A 33 ASP A 36 0 SHEET 2 A 7 ALA A 47 HIS A 52 -1 N LEU A 50 O THR A 35 SHEET 3 A 7 GLY A 11 ALA A 16 -1 O GLY A 11 N VAL A 51 SHEET 4 A 7 GLU A 151 SER A 155 -1 N VAL A 152 O ALA A 16 SHEET 5 A 7 TYR A 144 ALA A 148 -1 N TYR A 144 O SER A 155 SHEET 6 A 7 TYR A 185 GLN A 186 -1 N TYR A 185 O THR A 145 SHEET 7 A 7 ARG A 176 ARG A 177 -1 O ARG A 176 N GLN A 186 SHEET 1 B 6 VAL A 62 SER A 65 0 SHEET 2 B 6 THR A 71 ILE A 79 -1 N THR A 71 O SER A 65 SHEET 3 B 6 GLY A 119 THR A 127 -1 N ARG A 120 O GLU A 78 SHEET 4 B 6 ARG A 130 THR A 135 -1 O ARG A 130 N THR A 127 SHEET 5 B 6 ALA A 191 ASP A 196 -1 O ALA A 191 N THR A 135 SHEET 6 B 6 THR A 201 ARG A 206 -1 O THR A 201 N ASP A 196 SHEET 1 C 5 ARG A 294 THR A 299 0 SHEET 2 C 5 ASP A 269 GLY A 274 1 N THR A 270 O ARG A 294 SHEET 3 C 5 LEU A 245 VAL A 247 1 N VAL A 246 O ASP A 269 SHEET 4 C 5 ARG A 343 LEU A 345 1 O ARG A 343 N LEU A 245 SHEET 5 C 5 TRP A 394 THR A 396 1 O TRP A 394 N ILE A 344 SHEET 1 D 2 ARG A 417 ARG A 418 0 SHEET 2 D 2 ARG A 421 ASP A 422 -1 N ARG A 421 O ARG A 418 SHEET 1 E 7 SER B 33 ASP B 36 0 SHEET 2 E 7 ALA B 47 HIS B 52 -1 N LEU B 50 O THR B 35 SHEET 3 E 7 GLY B 11 ARG B 17 -1 O GLY B 11 N VAL B 51 SHEET 4 E 7 GLU B 151 SER B 155 -1 N VAL B 152 O ALA B 16 SHEET 5 E 7 TYR B 144 ALA B 148 -1 N TYR B 144 O SER B 155 SHEET 6 E 7 TYR B 185 GLN B 186 -1 O TYR B 185 N THR B 145 SHEET 7 E 7 ARG B 176 ARG B 177 -1 O ARG B 176 N GLN B 186 SHEET 1 F 6 VAL B 62 ARG B 64 0 SHEET 2 F 6 THR B 71 ILE B 79 -1 N ALA B 73 O ALA B 63 SHEET 3 F 6 GLY B 119 THR B 127 -1 N ARG B 120 O GLU B 78 SHEET 4 F 6 ARG B 130 THR B 135 -1 O ARG B 130 N THR B 127 SHEET 5 F 6 ALA B 191 ASP B 196 -1 O ALA B 191 N THR B 135 SHEET 6 F 6 THR B 201 ARG B 206 -1 O THR B 201 N ASP B 196 SHEET 1 G 5 ARG B 294 ILE B 300 0 SHEET 2 G 5 ASP B 269 THR B 275 1 N THR B 270 O ARG B 294 SHEET 3 G 5 LEU B 245 VAL B 247 1 N VAL B 246 O ASP B 269 SHEET 4 G 5 ARG B 343 LEU B 345 1 O ARG B 343 N LEU B 245 SHEET 5 G 5 TRP B 394 THR B 396 1 O TRP B 394 N ILE B 344 SHEET 1 H 2 ARG B 417 ARG B 418 0 SHEET 2 H 2 ARG B 421 ASP B 422 -1 N ARG B 421 O ARG B 418 LINK O5' APC A 801 O2 CMA A 803 1555 1555 1.87 LINK C5' APC A 801 O2 CMA A 803 1555 1555 2.03 LINK OD2 ASP A 253 MG MG A 902 1555 1555 2.06 LINK OD1 ASP A 351 MG MG A 902 1555 1555 2.21 LINK O1G APC A 801 MG MG A 902 1555 1555 2.38 LINK O2B APC A 801 MG MG A 902 1555 1555 2.15 LINK O1A APC A 801 MG MG A 902 1555 1555 2.18 LINK MG MG A 902 O HOH A 922 1555 1555 2.17 LINK OD1 ASP B 253 MG MG B 901 1555 1555 2.00 LINK OD1 ASP B 351 MG MG B 901 1555 1555 2.47 LINK O2G APC B 802 MG MG B 901 1555 1555 2.02 LINK O1A APC B 802 MG MG B 901 1555 1555 2.18 LINK O2B APC B 802 MG MG B 901 1555 1555 2.14 LINK MG MG B 901 O HOH B 986 1555 1555 2.38 CISPEP 1 GLY B 92 PRO B 93 0 0.02 SITE 1 AC1 4 ASP B 253 ASP B 351 APC B 802 HOH B 986 SITE 1 AC2 5 ASP A 253 ASP A 351 LYS A 443 APC A 801 SITE 2 AC2 5 HOH A 922 SITE 1 AC3 22 VAL A 247 LEU A 248 SER A 249 GLY A 251 SITE 2 AC3 22 ILE A 252 ASP A 253 SER A 254 VAL A 271 SITE 3 AC3 22 SER A 272 MET A 273 LEU A 330 GLY A 347 SITE 4 AC3 22 TYR A 348 ASP A 351 LYS A 423 LYS A 443 SITE 5 AC3 22 CMA A 803 MG A 902 HOH A 922 HOH A1086 SITE 6 AC3 22 HOH A1148 HOH A1151 SITE 1 AC4 11 TYR A 326 TYR A 348 GLY A 349 ASP A 351 SITE 2 AC4 11 ILE A 352 ASP A 373 GLU A 382 APC A 801 SITE 3 AC4 11 HOH A 922 HOH A 938 HOH A 955 SITE 1 AC5 21 VAL B 247 LEU B 248 SER B 249 GLY B 251 SITE 2 AC5 21 ILE B 252 ASP B 253 SER B 254 VAL B 271 SITE 3 AC5 21 SER B 272 MET B 273 LEU B 330 LEU B 333 SITE 4 AC5 21 GLY B 347 TYR B 348 ASP B 351 LYS B 423 SITE 5 AC5 21 LYS B 443 CMA B 804 MG B 901 HOH B 960 SITE 6 AC5 21 HOH B1101 SITE 1 AC6 12 TYR B 326 TYR B 348 GLY B 349 ASP B 351 SITE 2 AC6 12 ILE B 352 MET B 357 ASP B 373 GLU B 382 SITE 3 AC6 12 LYS B 443 APC B 802 HOH B 986 HOH B1045 SITE 1 AC7 6 LEU B 245 THR B 270 ARG B 294 ARG B 342 SITE 2 AC7 6 HOH B 922 HOH B 948 SITE 1 AC8 4 LEU B 13 SER B 15 ALA B 48 THR B 49 SITE 1 AC9 1 HIS B 372 SITE 1 BC1 7 ASP A 406 HOH A 918 HOH A1079 SER B 213 SITE 2 BC1 7 ARG B 215 GOL B 713 HOH B1058 SITE 1 BC2 5 ARG B 215 LEU B 217 SER B 410 GOL B 712 SITE 2 BC2 5 HOH B 930 CRYST1 61.352 97.873 80.969 90.00 90.78 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016299 0.000000 0.000222 0.00000 SCALE2 0.000000 0.010217 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012352 0.00000