HEADER HYDROLASE 27-JUN-01 1JH7 TITLE SEMI-REDUCED INHIBITOR-BOUND CYCLIC NUCLEOTIDE PHOSPHODIESTERASE FROM TITLE 2 ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC PHOSPHODIESTERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.4.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11D+ KEYWDS ADP-RIBOSE 1'', 2''-CYCLIC PHOSPHATE, RNA PROCESSING, 2', 3'-CYCLIC KEYWDS 2 NUCLEOTIDE PHOSPHODIESTERASE, 3'-CYCLIC URIDINE VANADATE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.HOFMANN,M.GRELLA,I.BOTOS,W.FILIPOWICZ,A.WLODAWER REVDAT 5 16-OCT-24 1JH7 1 REMARK REVDAT 4 03-APR-24 1JH7 1 REMARK SEQADV REVDAT 3 13-JUL-11 1JH7 1 VERSN REVDAT 2 24-FEB-09 1JH7 1 VERSN REVDAT 1 06-FEB-02 1JH7 0 JRNL AUTH A.HOFMANN,M.GRELLA,I.BOTOS,W.FILIPOWICZ,A.WLODAWER JRNL TITL CRYSTAL STRUCTURES OF THE SEMIREDUCED AND INHIBITOR-BOUND JRNL TITL 2 FORMS OF CYCLIC NUCLEOTIDE PHOSPHODIESTERASE FROM JRNL TITL 3 ARABIDOPSIS THALIANA. JRNL REF J.BIOL.CHEM. V. 277 1419 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 11694509 JRNL DOI 10.1074/JBC.M107889200 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 185038.810 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 84.2 REMARK 3 NUMBER OF REFLECTIONS : 5960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.399 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.900 REMARK 3 FREE R VALUE TEST SET COUNT : 650 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.016 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 829 REMARK 3 BIN R VALUE (WORKING SET) : 0.4310 REMARK 3 BIN FREE R VALUE : 0.4770 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 97 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.048 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1458 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 94 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.85000 REMARK 3 B22 (A**2) : 0.85000 REMARK 3 B33 (A**2) : -1.71000 REMARK 3 B12 (A**2) : 6.95000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM SIGMAA (A) : 0.64 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.59 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.85 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 2.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.020 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.650 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.240 ; 3.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.090 ; 3.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.010 ; 4.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 236.9 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : UVD_NEU2.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : UVD_NEU2.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JH7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUL-01. REMARK 100 THE DEPOSITION ID IS D_1000013768. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X9B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.070 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7212 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.46600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: SEMI-REDUCED CPDASE (A. THALIANA) [DELTA 90-115] REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: (NH4)2SO4, NAOAC, DTT, 2',3'-CYCLIC REMARK 280 URIDINE VANADATE, PH 5.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 50.57000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 29.19660 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 30.00000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 50.57000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 29.19660 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 30.00000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 50.57000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 29.19660 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 30.00000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 50.57000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 29.19660 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 30.00000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 50.57000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 29.19660 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 30.00000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 50.57000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 29.19660 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 30.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 58.39321 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 60.00000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 58.39321 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 60.00000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 58.39321 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 60.00000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 58.39321 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 60.00000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 58.39321 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 60.00000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 58.39321 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 60.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -385.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 101.14000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 50.57000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 87.58981 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 50.57000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 -29.19660 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 60.00000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 58.39321 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 60.00000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 101.14000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 58.39321 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 60.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 101.14000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 58.39321 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 60.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 213 LIES ON A SPECIAL POSITION. REMARK 375 S SO4 A 214 LIES ON A SPECIAL POSITION. REMARK 375 O1 SO4 A 214 LIES ON A SPECIAL POSITION. REMARK 375 S SO4 A 215 LIES ON A SPECIAL POSITION. REMARK 375 O2 SO4 A 215 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 377 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 392 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 393 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 186 REMARK 465 HIS A 187 REMARK 465 HIS A 188 REMARK 465 HIS A 189 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 106 CG OD1 ND2 REMARK 470 PHE A 108 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CZ ARG A 76 OG1 THR A 112 14654 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 110 C SER A 111 N -0.147 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 108 CA - C - N ANGL. DEV. = 16.8 DEGREES REMARK 500 PHE A 108 O - C - N ANGL. DEV. = -19.8 DEGREES REMARK 500 SER A 111 CB - CA - C ANGL. DEV. = 12.0 DEGREES REMARK 500 SER A 111 CA - C - N ANGL. DEV. = -15.6 DEGREES REMARK 500 SER A 111 O - C - N ANGL. DEV. = 18.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 15 -155.14 -86.33 REMARK 500 GLU A 17 25.02 -70.70 REMARK 500 GLU A 18 -16.63 -141.20 REMARK 500 SER A 19 -61.71 -94.73 REMARK 500 GLU A 20 -53.79 -28.60 REMARK 500 LYS A 24 -36.26 -36.95 REMARK 500 GLU A 33 -70.61 -59.11 REMARK 500 THR A 35 -152.42 -141.88 REMARK 500 PHE A 39 -163.87 -111.54 REMARK 500 ALA A 49 -163.96 -117.78 REMARK 500 THR A 52 -170.62 -62.72 REMARK 500 GLU A 55 -13.24 -42.48 REMARK 500 LEU A 67 65.05 18.49 REMARK 500 LYS A 68 151.33 -42.97 REMARK 500 ARG A 76 167.25 179.31 REMARK 500 PHE A 83 -31.33 -29.23 REMARK 500 GLN A 85 64.82 -107.50 REMARK 500 CYS A 86 -91.99 -89.09 REMARK 500 THR A 93 42.13 -62.51 REMARK 500 PRO A 95 -89.02 -48.97 REMARK 500 GLU A 96 -34.36 -26.70 REMARK 500 GLU A 102 -0.23 -54.05 REMARK 500 ASN A 106 106.75 -49.46 REMARK 500 HIS A 107 -144.56 68.05 REMARK 500 CYS A 110 -159.83 -115.01 REMARK 500 SER A 111 57.00 -151.97 REMARK 500 THR A 112 -71.81 0.93 REMARK 500 ALA A 125 114.95 -177.41 REMARK 500 GLU A 126 91.03 -66.04 REMARK 500 GLU A 129 -46.68 -27.22 REMARK 500 THR A 163 -12.93 -33.02 REMARK 500 LEU A 168 11.55 46.69 REMARK 500 ASN A 180 62.87 -115.83 REMARK 500 SER A 183 -159.33 59.43 REMARK 500 HIS A 184 138.36 -19.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UVC A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UVC A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FSI RELATED DB: PDB REMARK 900 OXIDISED CYCLIC NUCLEOTIDE PHOSPHODIESTERASE FROM ARABIDOPSIS REMARK 900 THALIANA REMARK 900 RELATED ID: 1JH6 RELATED DB: PDB REMARK 900 SEMI-REDUCED CYCLIC NUCLEOTIDE PHOSPHODIESTERASE FROM ARABIDOPSIS REMARK 900 THALIANA DBREF 1JH7 A 1 181 UNP O04147 CPD_ARATH 1 181 SEQADV 1JH7 GLY A 182 UNP O04147 EXPRESSION TAG SEQADV 1JH7 SER A 183 UNP O04147 EXPRESSION TAG SEQADV 1JH7 HIS A 184 UNP O04147 EXPRESSION TAG SEQADV 1JH7 HIS A 185 UNP O04147 EXPRESSION TAG SEQADV 1JH7 HIS A 186 UNP O04147 EXPRESSION TAG SEQADV 1JH7 HIS A 187 UNP O04147 EXPRESSION TAG SEQADV 1JH7 HIS A 188 UNP O04147 EXPRESSION TAG SEQADV 1JH7 HIS A 189 UNP O04147 EXPRESSION TAG SEQRES 1 A 189 MET GLU GLU VAL LYS LYS ASP VAL TYR SER VAL TRP ALA SEQRES 2 A 189 LEU PRO ASP GLU GLU SER GLU PRO ARG PHE LYS LYS LEU SEQRES 3 A 189 MET GLU ALA LEU ARG SER GLU PHE THR GLY PRO ARG PHE SEQRES 4 A 189 VAL PRO HIS VAL THR VAL ALA VAL SER ALA TYR LEU THR SEQRES 5 A 189 ALA ASP GLU ALA LYS LYS MET PHE GLU SER ALA CYS ASP SEQRES 6 A 189 GLY LEU LYS ALA TYR THR ALA THR VAL ASP ARG VAL SER SEQRES 7 A 189 THR GLY THR PHE PHE PHE GLN CYS VAL PHE LEU LEU LEU SEQRES 8 A 189 GLN THR THR PRO GLU VAL MET GLU ALA GLY GLU HIS CYS SEQRES 9 A 189 LYS ASN HIS PHE ASN CYS SER THR THR THR PRO TYR MET SEQRES 10 A 189 PRO HIS LEU SER LEU LEU TYR ALA GLU LEU THR GLU GLU SEQRES 11 A 189 GLU LYS LYS ASN ALA GLN GLU LYS ALA TYR THR LEU ASP SEQRES 12 A 189 SER SER LEU ASP GLY LEU SER PHE ARG LEU ASN ARG LEU SEQRES 13 A 189 ALA LEU CYS LYS THR ASP THR GLU ASP LYS THR LEU GLU SEQRES 14 A 189 THR TRP GLU THR VAL ALA VAL CYS ASN LEU ASN PRO GLY SEQRES 15 A 189 SER HIS HIS HIS HIS HIS HIS HET SO4 A 212 5 HET SO4 A 213 5 HET SO4 A 214 5 HET SO4 A 215 5 HET UVC A 201 21 HET UVC A 202 21 HETNAM SO4 SULFATE ION HETNAM UVC URIDINE-2',3'-VANADATE FORMUL 2 SO4 4(O4 S 2-) FORMUL 6 UVC 2(C9 H12 N2 O9 V) FORMUL 8 HOH *94(H2 O) HELIX 1 1 SER A 19 PHE A 34 1 16 HELIX 2 2 ALA A 53 ASP A 65 1 13 HELIX 3 3 THR A 94 GLU A 99 1 6 HELIX 4 4 THR A 128 TYR A 140 1 13 SHEET 1 A 4 VAL A 43 LEU A 51 0 SHEET 2 A 4 ASP A 7 LEU A 14 -1 O ASP A 7 N LEU A 51 SHEET 3 A 4 ARG A 155 LYS A 160 -1 O ARG A 155 N LEU A 14 SHEET 4 A 4 GLU A 172 ASN A 178 -1 O GLU A 172 N LYS A 160 SHEET 1 B 2 THR A 71 THR A 73 0 SHEET 2 B 2 SER A 150 ARG A 152 -1 N PHE A 151 O ALA A 72 SHEET 1 C 3 ARG A 76 PHE A 82 0 SHEET 2 C 3 GLN A 85 LEU A 90 -1 N GLN A 85 O PHE A 82 SHEET 3 C 3 HIS A 119 LEU A 123 -1 O LEU A 120 N LEU A 89 SSBOND 1 CYS A 64 CYS A 177 1555 1555 2.03 SITE 1 AC1 4 SER A 78 HOH A 350 HOH A 368 HOH A 369 SITE 1 AC2 2 HOH A 317 HOH A 392 SITE 1 AC3 1 SO4 A 215 SITE 1 AC4 2 GLU A 28 SO4 A 214 SITE 1 AC5 14 SER A 10 TRP A 12 HIS A 42 THR A 44 SITE 2 AC5 14 TYR A 50 PHE A 84 HIS A 119 SER A 121 SITE 3 AC5 14 TYR A 124 THR A 161 THR A 163 TRP A 171 SITE 4 AC5 14 HOH A 372 HOH A 373 SITE 1 AC6 6 ARG A 31 GLY A 36 PRO A 37 ARG A 38 SITE 2 AC6 6 PHE A 39 LEU A 168 CRYST1 101.140 101.140 90.000 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009887 0.005708 0.000000 0.00000 SCALE2 0.000000 0.011417 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011111 0.00000