HEADER OXIDOREDUCTASE 29-JUN-01 1JI8 TITLE SOLUTION STRUCTURE OF PYROBACULUM AEROPHILUM DSRC/GAMMA SUBUNIT OF TITLE 2 DISSIMILATORY SULFITE REDUCTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DISSIMILATORY SIROHEME-SULFITE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GAMMA SUBUNIT; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROBACULUM AEROPHILUM; SOURCE 3 ORGANISM_TAXID: 13773; SOURCE 4 GENE: DSRC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL221(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET28B KEYWDS ORTHOGONAL HELICAL BUNDLE, STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 NESG, OXIDOREDUCTASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.R.CORT,M.A.KENNEDY,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 23-FEB-22 1JI8 1 REMARK SEQADV REVDAT 3 24-FEB-09 1JI8 1 VERSN REVDAT 2 25-JAN-05 1JI8 1 AUTHOR KEYWDS REMARK REVDAT 1 05-DEC-01 1JI8 0 JRNL AUTH J.R.CORT,S.V.MARIAPPAN,C.Y.KIM,M.S.PARK,T.S.PEAT,G.S.WALDO, JRNL AUTH 2 T.C.TERWILLIGER,M.A.KENNEDY JRNL TITL SOLUTION STRUCTURE OF PYROBACULUM AEROPHILUM DSRC, AN JRNL TITL 2 ARCHAEAL HOMOLOGUE OF THE GAMMA SUBUNIT OF DISSIMILATORY JRNL TITL 3 SULFITE REDUCTASE. JRNL REF EUR.J.BIOCHEM. V. 268 5842 2001 JRNL REFN ISSN 0014-2956 JRNL PMID 11722571 JRNL DOI 10.1046/J.0014-2956.2001.02529.X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.84, X-PLOR 3.84 REMARK 3 AUTHORS : BRUNGER (X-PLOR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 504 NOE-DERIVED DISTANCE RESTRAINTS, 56 REMARK 3 H-BOND RESTRAINTS (2 PER H-BOND), 89 DIHEDRAL RESTRAINTS (50 PHI, REMARK 3 39 PSI) REMARK 4 REMARK 4 1JI8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-01. REMARK 100 THE DEPOSITION ID IS D_1000013802. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 100 MM SALT, 25 MM PHOSPHATE REMARK 210 BUFFER REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM DSRC U-15N, 25 MM PHOSPHATE REMARK 210 BUFFER, PH 7.4, 100 MM NACL, 90% REMARK 210 H2O, 10% D2O; 2 MM DSRC U-13C, REMARK 210 15N, 25 MM PHOSPHATE BUFFER, PH REMARK 210 7.4, 100 MM NACL, 90% H2O, 10% REMARK 210 D2O; 2 MM DSRC U-13C,15N, 25 MM REMARK 210 PHOSPHATE BUFFER, PH* 7.0 100 MM REMARK 210 NACL, 99% D2O; 2 MM DSRC U-15N, REMARK 210 25 MM PHOSPHATE BUFFER, PH* 7.0 REMARK 210 100 MM NACL, 99% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 4D_13C-SEPARATED_NOESY; REMARK 210 3D_13C,15N-SIMULTANEOUS NOESY; REMARK 210 3D_15N-SEPARATED_NOESY; HNHA; 1H- REMARK 210 15N, HSQC D2O EXCHANGE REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 98, VNMR REMARK 210 METHOD USED : DISTANCE GEOMETRY AND SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 24 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 4 87.52 -65.15 REMARK 500 1 ASP A 12 74.49 41.38 REMARK 500 1 ASN A 26 68.67 -157.71 REMARK 500 1 LEU A 42 -66.07 -93.01 REMARK 500 1 THR A 49 -169.15 -71.58 REMARK 500 1 PRO A 71 -160.46 -73.07 REMARK 500 1 THR A 79 -74.50 -159.41 REMARK 500 1 ALA A 95 -85.20 -64.99 REMARK 500 1 PRO A 107 -89.99 -72.74 REMARK 500 1 CYS A 110 97.72 58.87 REMARK 500 2 ASP A 21 51.13 -116.79 REMARK 500 2 LEU A 42 -79.49 -83.85 REMARK 500 2 GLU A 43 -79.28 -83.68 REMARK 500 2 PHE A 66 -75.41 -78.90 REMARK 500 2 PRO A 71 -160.21 -72.92 REMARK 500 2 LYS A 73 -44.06 -141.58 REMARK 500 2 THR A 79 -70.69 -68.91 REMARK 500 2 PHE A 81 170.88 -52.18 REMARK 500 2 PRO A 94 -92.45 -72.90 REMARK 500 2 ALA A 95 -89.96 49.60 REMARK 500 3 ASP A 12 -89.66 55.69 REMARK 500 3 ASP A 19 -161.70 -75.42 REMARK 500 3 MET A 24 106.60 -52.61 REMARK 500 3 ASN A 26 68.25 -151.74 REMARK 500 3 ASP A 31 -160.06 -165.65 REMARK 500 3 LEU A 42 -73.54 -91.39 REMARK 500 3 GLU A 43 -76.49 -82.43 REMARK 500 3 LYS A 47 130.58 -177.78 REMARK 500 3 PHE A 66 -35.94 -137.00 REMARK 500 3 PRO A 71 -90.08 -73.40 REMARK 500 3 ILE A 72 74.15 -175.51 REMARK 500 3 LYS A 73 -63.78 -124.88 REMARK 500 3 GLU A 78 -71.00 -102.88 REMARK 500 3 SER A 92 86.17 -67.16 REMARK 500 3 ALA A 104 78.73 177.93 REMARK 500 3 CYS A 110 172.02 -48.22 REMARK 500 4 ASP A 19 -172.94 -59.74 REMARK 500 4 ASP A 29 -81.86 -97.41 REMARK 500 4 TRP A 30 120.34 59.47 REMARK 500 4 GLU A 43 -83.29 -110.24 REMARK 500 4 PRO A 71 -161.95 -72.94 REMARK 500 4 GLU A 78 -78.43 -90.57 REMARK 500 4 SER A 92 94.75 -66.28 REMARK 500 4 ALA A 95 -88.66 -73.50 REMARK 500 4 LYS A 106 77.09 -151.24 REMARK 500 4 THR A 108 -158.72 -106.72 REMARK 500 5 ASP A 12 73.04 43.20 REMARK 500 5 ASP A 19 -162.77 -58.77 REMARK 500 5 ASP A 21 44.26 -106.99 REMARK 500 5 TRP A 30 158.73 -46.32 REMARK 500 REMARK 500 THIS ENTRY HAS 253 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 40 0.26 SIDE CHAIN REMARK 500 1 ARG A 60 0.31 SIDE CHAIN REMARK 500 2 ARG A 40 0.27 SIDE CHAIN REMARK 500 2 ARG A 60 0.24 SIDE CHAIN REMARK 500 3 ARG A 40 0.27 SIDE CHAIN REMARK 500 3 ARG A 60 0.17 SIDE CHAIN REMARK 500 4 ARG A 40 0.29 SIDE CHAIN REMARK 500 4 ARG A 60 0.20 SIDE CHAIN REMARK 500 5 ARG A 40 0.20 SIDE CHAIN REMARK 500 5 ARG A 60 0.27 SIDE CHAIN REMARK 500 6 ARG A 40 0.19 SIDE CHAIN REMARK 500 6 ARG A 60 0.25 SIDE CHAIN REMARK 500 7 ARG A 40 0.29 SIDE CHAIN REMARK 500 7 ARG A 60 0.32 SIDE CHAIN REMARK 500 8 ARG A 40 0.31 SIDE CHAIN REMARK 500 8 ARG A 60 0.19 SIDE CHAIN REMARK 500 9 ARG A 40 0.19 SIDE CHAIN REMARK 500 9 ARG A 60 0.31 SIDE CHAIN REMARK 500 10 ARG A 40 0.31 SIDE CHAIN REMARK 500 10 ARG A 60 0.24 SIDE CHAIN REMARK 500 11 ARG A 40 0.31 SIDE CHAIN REMARK 500 11 ARG A 60 0.28 SIDE CHAIN REMARK 500 12 ARG A 40 0.09 SIDE CHAIN REMARK 500 12 ARG A 60 0.31 SIDE CHAIN REMARK 500 13 ARG A 40 0.15 SIDE CHAIN REMARK 500 13 ARG A 60 0.31 SIDE CHAIN REMARK 500 14 ARG A 40 0.11 SIDE CHAIN REMARK 500 14 ARG A 60 0.17 SIDE CHAIN REMARK 500 15 ARG A 40 0.31 SIDE CHAIN REMARK 500 15 ARG A 60 0.11 SIDE CHAIN REMARK 500 16 ARG A 40 0.25 SIDE CHAIN REMARK 500 16 ARG A 60 0.25 SIDE CHAIN REMARK 500 17 ARG A 40 0.26 SIDE CHAIN REMARK 500 17 ARG A 60 0.26 SIDE CHAIN REMARK 500 18 ARG A 40 0.23 SIDE CHAIN REMARK 500 18 ARG A 60 0.22 SIDE CHAIN REMARK 500 19 ARG A 40 0.20 SIDE CHAIN REMARK 500 19 ARG A 60 0.32 SIDE CHAIN REMARK 500 20 ARG A 40 0.30 SIDE CHAIN REMARK 500 20 ARG A 60 0.30 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: OP1 RELATED DB: TARGETDB DBREF 1JI8 A 1 111 UNP Q8ZUX1 Q8ZUX1_PYRAE 1 111 SEQADV 1JI8 GLN A 10 UNP Q8ZUX1 LYS 10 CONFLICT SEQADV 1JI8 GLY A 13 UNP Q8ZUX1 ASP 13 CONFLICT SEQADV 1JI8 LYS A 14 UNP Q8ZUX1 VAL 14 CONFLICT SEQADV 1JI8 LYS A 15 UNP Q8ZUX1 THR 15 CONFLICT SEQADV 1JI8 VAL A 16 UNP Q8ZUX1 ILE 16 CONFLICT SEQADV 1JI8 ASP A 21 UNP Q8ZUX1 GLU 21 CONFLICT SEQADV 1JI8 MET A 24 UNP Q8ZUX1 LEU 24 CONFLICT SEQADV 1JI8 GLN A 25 UNP Q8ZUX1 SER 25 CONFLICT SEQADV 1JI8 ASP A 29 UNP Q8ZUX1 VAL 29 CONFLICT SEQADV 1JI8 ASP A 31 UNP Q8ZUX1 ASN 31 CONFLICT SEQADV 1JI8 LEU A 38 UNP Q8ZUX1 MET 38 CONFLICT SEQADV 1JI8 GLU A 51 UNP Q8ZUX1 ASP 51 CONFLICT SEQADV 1JI8 LEU A 55 UNP Q8ZUX1 VAL 55 CONFLICT SEQADV 1JI8 PHE A 66 UNP Q8ZUX1 TYR 66 CONFLICT SEQADV 1JI8 THR A 68 UNP Q8ZUX1 VAL 68 CONFLICT SEQADV 1JI8 VAL A 75 UNP Q8ZUX1 LEU 75 CONFLICT SEQADV 1JI8 THR A 76 UNP Q8ZUX1 LEU 76 CONFLICT SEQADV 1JI8 SER A 82 UNP Q8ZUX1 THR 82 CONFLICT SEQADV 1JI8 LYS A 85 UNP Q8ZUX1 GLN 85 CONFLICT SEQADV 1JI8 HIS A 96 UNP Q8ZUX1 ASN 96 CONFLICT SEQRES 1 A 111 MET PRO VAL LYS CYS PRO GLY GLU TYR GLN VAL ASP GLY SEQRES 2 A 111 LYS LYS VAL ILE LEU ASP GLU ASP CYS PHE MET GLN ASN SEQRES 3 A 111 PRO GLU ASP TRP ASP GLU LYS VAL ALA GLU TRP LEU ALA SEQRES 4 A 111 ARG GLU LEU GLU GLY ILE GLN LYS MET THR GLU GLU HIS SEQRES 5 A 111 TRP LYS LEU VAL LYS TYR LEU ARG GLU TYR TRP GLU THR SEQRES 6 A 111 PHE GLY THR CYS PRO PRO ILE LYS MET VAL THR LYS GLU SEQRES 7 A 111 THR GLY PHE SER LEU GLU LYS ILE TYR GLN LEU PHE PRO SEQRES 8 A 111 SER GLY PRO ALA HIS GLY ALA CYS LYS VAL ALA GLY ALA SEQRES 9 A 111 PRO LYS PRO THR GLY CYS VAL HELIX 1 1 GLU A 20 CYS A 22 5 3 HELIX 2 2 ASN A 26 TRP A 30 5 5 HELIX 3 3 ASP A 31 GLU A 43 1 13 HELIX 4 4 THR A 49 TRP A 63 1 15 HELIX 5 5 MET A 74 THR A 79 5 6 HELIX 6 6 SER A 82 PHE A 90 1 9 HELIX 7 7 GLY A 93 GLY A 103 1 11 SHEET 1 A 3 GLY A 7 GLN A 10 0 SHEET 2 A 3 LYS A 15 ASP A 19 -1 N VAL A 16 O TYR A 9 SHEET 3 A 3 PHE A 23 MET A 24 -1 O PHE A 23 N ASP A 19 SSBOND 1 CYS A 5 CYS A 22 1555 1555 2.02 SSBOND 2 CYS A 69 CYS A 99 1555 1555 2.02 CISPEP 1 CYS A 5 PRO A 6 1 -0.23 CISPEP 2 CYS A 5 PRO A 6 2 -0.26 CISPEP 3 CYS A 5 PRO A 6 3 -0.15 CISPEP 4 CYS A 5 PRO A 6 4 -0.27 CISPEP 5 CYS A 5 PRO A 6 5 -0.31 CISPEP 6 CYS A 5 PRO A 6 6 0.00 CISPEP 7 CYS A 5 PRO A 6 7 -0.19 CISPEP 8 CYS A 5 PRO A 6 8 -0.11 CISPEP 9 CYS A 5 PRO A 6 9 -0.25 CISPEP 10 CYS A 5 PRO A 6 10 -0.14 CISPEP 11 CYS A 5 PRO A 6 11 -0.27 CISPEP 12 CYS A 5 PRO A 6 12 -0.35 CISPEP 13 CYS A 5 PRO A 6 13 -0.26 CISPEP 14 CYS A 5 PRO A 6 14 -0.11 CISPEP 15 CYS A 5 PRO A 6 15 -0.32 CISPEP 16 CYS A 5 PRO A 6 16 -0.31 CISPEP 17 CYS A 5 PRO A 6 17 -0.35 CISPEP 18 CYS A 5 PRO A 6 18 -0.14 CISPEP 19 CYS A 5 PRO A 6 19 -0.26 CISPEP 20 CYS A 5 PRO A 6 20 -0.15 CRYST1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1