HEADER METAL BINDING PROTEIN 01-JUL-01 1JI9 TITLE SOLUTION STRUCTURE OF THE ALPHA-DOMAIN OF MOUSE METALLOTHIONEIN-3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLOTHIONEIN-III; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL (ALPHA) DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET3D KEYWDS 3-10 HELIX, CD-S CLUSTER, HALF TURN, TYPE II TURN, METAL BINDING KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR G.OZ,K.ZANGGER,I.M.ARMITAGE REVDAT 3 23-FEB-22 1JI9 1 REMARK LINK REVDAT 2 24-FEB-09 1JI9 1 VERSN REVDAT 1 03-OCT-01 1JI9 0 JRNL AUTH G.OZ,K.ZANGGER,I.M.ARMITAGE JRNL TITL THREE-DIMENSIONAL STRUCTURE AND DYNAMICS OF A BRAIN SPECIFIC JRNL TITL 2 GROWTH INHIBITORY FACTOR: METALLOTHIONEIN-3. JRNL REF BIOCHEMISTRY V. 40 11433 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11560491 JRNL DOI 10.1021/BI010827L REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851, X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER (X-PLOR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 A TOTAL OF 377 NOE-DERIVED DISTANCE CONSTRAINTS REMARK 3 AND 16 CADMIUM-TO-CYSTEINE CONNECTIVITIES REMARK 3 WERE USED IN THE STRUCTURE CALCULATIONS. REMARK 4 REMARK 4 1JI9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-01. REMARK 100 THE DEPOSITION ID IS D_1000013803. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283; 303 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 20MM TRIS-HCL; 20MM TRIS-HCL REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 1.6 MM MOUSE METALLOTHIONEIN-3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; 1H-113CD REMARK 210 HMQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : HYBRID DISTANCE GEOMETRY REMARK 210 -DYNAMICAL SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : MINIMIZED AVERAGE STRUCTURE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES AND 2D 1H-113CD HMQC SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 55 HZ3 LYS A 58 1.45 REMARK 500 HG CYS A 51 CD CD A 69 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 46 N - CA - CB ANGL. DEV. = -8.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 34 26.23 35.46 REMARK 500 CYS A 42 107.49 -48.95 REMARK 500 ASP A 48 41.43 178.51 REMARK 500 CYS A 49 88.05 55.02 REMARK 500 GLU A 54 45.94 -86.36 REMARK 500 GLU A 55 -99.25 -94.81 REMARK 500 ALA A 57 40.09 -88.19 REMARK 500 LYS A 58 132.69 -38.74 REMARK 500 ALA A 61 -25.93 -38.54 REMARK 500 GLU A 62 -21.06 89.79 REMARK 500 CYS A 64 -165.93 -118.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 70 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 34 O REMARK 620 2 CYS A 34 SG 65.3 REMARK 620 3 CYS A 35 SG 58.0 110.0 REMARK 620 4 CYS A 45 SG 169.2 107.7 120.6 REMARK 620 5 CYS A 49 SG 83.2 109.4 101.3 107.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 72 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 35 SG REMARK 620 2 CYS A 37 SG 100.9 REMARK 620 3 CYS A 38 SG 110.1 107.0 REMARK 620 4 CYS A 51 SG 106.8 122.2 109.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 71 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 38 SG REMARK 620 2 CYS A 42 SG 96.5 REMARK 620 3 CYS A 45 SG 117.5 114.1 REMARK 620 4 CYS A 67 SG 109.8 99.1 116.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 69 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 51 SG REMARK 620 2 CYS A 64 SG 113.4 REMARK 620 3 CYS A 66 SG 108.7 106.2 REMARK 620 4 CYS A 67 SG 102.2 110.2 116.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 69 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 70 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 71 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 72 DBREF 1JI9 A 32 68 UNP P28184 MT3_MOUSE 1 37 SEQRES 1 A 37 LYS SER CYS CYS SER CYS CYS PRO ALA GLY CYS GLU LYS SEQRES 2 A 37 CYS ALA LYS ASP CYS VAL CYS LYS GLY GLU GLU GLY ALA SEQRES 3 A 37 LYS ALA GLU ALA GLU LYS CYS SER CYS CYS GLN HET CD A 69 1 HET CD A 70 1 HET CD A 71 1 HET CD A 72 1 HETNAM CD CADMIUM ION FORMUL 2 CD 4(CD 2+) LINK O CYS A 34 CD CD A 70 1555 1555 2.90 LINK SG CYS A 34 CD CD A 70 1555 1555 2.52 LINK SG CYS A 35 CD CD A 70 1555 1555 2.51 LINK SG CYS A 35 CD CD A 72 1555 1555 2.49 LINK SG CYS A 37 CD CD A 72 1555 1555 2.51 LINK SG CYS A 38 CD CD A 71 1555 1555 2.49 LINK SG CYS A 38 CD CD A 72 1555 1555 2.50 LINK SG CYS A 42 CD CD A 71 1555 1555 2.50 LINK SG CYS A 45 CD CD A 70 1555 1555 2.52 LINK SG CYS A 45 CD CD A 71 1555 1555 2.53 LINK SG CYS A 49 CD CD A 70 1555 1555 2.51 LINK SG CYS A 51 CD CD A 69 1555 1555 2.51 LINK SG CYS A 51 CD CD A 72 1555 1555 2.51 LINK SG CYS A 64 CD CD A 69 1555 1555 2.51 LINK SG CYS A 66 CD CD A 69 1555 1555 2.51 LINK SG CYS A 67 CD CD A 69 1555 1555 2.51 LINK SG CYS A 67 CD CD A 71 1555 1555 2.51 SITE 1 AC1 6 CYS A 51 CYS A 64 CYS A 66 CYS A 67 SITE 2 AC1 6 CD A 71 CD A 72 SITE 1 AC2 4 CYS A 34 CYS A 35 CYS A 45 CYS A 49 SITE 1 AC3 7 CYS A 38 CYS A 42 CYS A 45 CYS A 51 SITE 2 AC3 7 CYS A 67 CD A 69 CD A 72 SITE 1 AC4 7 CYS A 35 CYS A 37 CYS A 38 CYS A 51 SITE 2 AC4 7 CYS A 64 CD A 69 CD A 71 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000