data_1JID # _entry.id 1JID # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1JID pdb_00001jid 10.2210/pdb1jid/pdb NDB PR0054 ? ? RCSB RCSB013805 ? ? WWPDB D_1000013805 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1D4R _pdbx_database_related.details '29-Mer Fragment Of Human Srp RNA Helix 6' _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 1JID _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2001-07-02 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wild, K.' 1 'Sinning, I.' 2 'Cusack, S.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Crystal structure of an early protein-RNA assembly complex of the signal recognition particle.' Science 294 598 601 2001 SCIEAS US 0036-8075 0038 ? 11641499 10.1126/science.1063839 1 'The 2 A structure of helix 6 of the human signal recognition particle RNA' Structure 7 1345 1352 1999 STRUE6 UK 0969-2126 2005 ? ? '10.1016/S0969-2126(00)80024-6' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wild, K.' 1 ? primary 'Sinning, I.' 2 ? primary 'Cusack, S.' 3 ? 1 'Wild, K.' 4 ? 1 'Weichenrieder, O.' 5 ? 1 'Leonard, G.A.' 6 ? 1 'Cusack, S.' 7 ? # _cell.entry_id 1JID _cell.length_a 55.813 _cell.length_b 109.782 _cell.length_c 89.461 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 # _symmetry.entry_id 1JID _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 20 _symmetry.cell_setting ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'HELIX 6 OF HUMAN SRP RNA' 9628.433 1 ? C162U ? ? 2 polymer man 'SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN' 14791.062 1 ? ? '24 C-TERMINAL RESIDUES TRUNCATED' ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 4 water nat water 18.015 277 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no yes 'GG(5BU)GACC(5BU)CCCGGGAGCGGGGGACCACU(A23)' GGUGACCUCCCGGGAGCGGGGGACCACUA B ? 2 'polypeptide(L)' no no ;MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWNRDVQYRG RVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQLEHHHHHH ; ;MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWNRDVQYRG RVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQLEHHHHHH ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 5BU n 1 4 G n 1 5 A n 1 6 C n 1 7 C n 1 8 5BU n 1 9 C n 1 10 C n 1 11 C n 1 12 G n 1 13 G n 1 14 G n 1 15 A n 1 16 G n 1 17 C n 1 18 G n 1 19 G n 1 20 G n 1 21 G n 1 22 G n 1 23 A n 1 24 C n 1 25 C n 1 26 A n 1 27 C n 1 28 U n 1 29 A23 n 2 1 MET n 2 2 ALA n 2 3 CYS n 2 4 ALA n 2 5 ALA n 2 6 ALA n 2 7 ARG n 2 8 SER n 2 9 PRO n 2 10 ALA n 2 11 ASP n 2 12 GLN n 2 13 ASP n 2 14 ARG n 2 15 PHE n 2 16 ILE n 2 17 CYS n 2 18 ILE n 2 19 TYR n 2 20 PRO n 2 21 ALA n 2 22 TYR n 2 23 LEU n 2 24 ASN n 2 25 ASN n 2 26 LYS n 2 27 LYS n 2 28 THR n 2 29 ILE n 2 30 ALA n 2 31 GLU n 2 32 GLY n 2 33 ARG n 2 34 ARG n 2 35 ILE n 2 36 PRO n 2 37 ILE n 2 38 SER n 2 39 LYS n 2 40 ALA n 2 41 VAL n 2 42 GLU n 2 43 ASN n 2 44 PRO n 2 45 THR n 2 46 ALA n 2 47 THR n 2 48 GLU n 2 49 ILE n 2 50 GLN n 2 51 ASP n 2 52 VAL n 2 53 CYS n 2 54 SER n 2 55 ALA n 2 56 VAL n 2 57 GLY n 2 58 LEU n 2 59 ASN n 2 60 VAL n 2 61 PHE n 2 62 LEU n 2 63 GLU n 2 64 LYS n 2 65 ASN n 2 66 LYS n 2 67 MET n 2 68 TYR n 2 69 SER n 2 70 ARG n 2 71 GLU n 2 72 TRP n 2 73 ASN n 2 74 ARG n 2 75 ASP n 2 76 VAL n 2 77 GLN n 2 78 TYR n 2 79 ARG n 2 80 GLY n 2 81 ARG n 2 82 VAL n 2 83 ARG n 2 84 VAL n 2 85 GLN n 2 86 LEU n 2 87 LYS n 2 88 GLN n 2 89 GLU n 2 90 ASP n 2 91 GLY n 2 92 SER n 2 93 LEU n 2 94 CYS n 2 95 LEU n 2 96 VAL n 2 97 GLN n 2 98 PHE n 2 99 PRO n 2 100 SER n 2 101 ARG n 2 102 LYS n 2 103 SER n 2 104 VAL n 2 105 MET n 2 106 LEU n 2 107 TYR n 2 108 ALA n 2 109 ALA n 2 110 GLU n 2 111 MET n 2 112 ILE n 2 113 PRO n 2 114 LYS n 2 115 LEU n 2 116 LYS n 2 117 THR n 2 118 ARG n 2 119 THR n 2 120 GLN n 2 121 LEU n 2 122 GLU n 2 123 HIS n 2 124 HIS n 2 125 HIS n 2 126 HIS n 2 127 HIS n 2 128 HIS n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain JM109 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This sequence occurs naturally in humans. The RNA has been in vitro transcribed using T7 RNA polymerase.' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP SR19_HUMAN 2 P09132 1 ;MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWNRDVQYRG RVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQ ; ? 2 GB X01037 1 36086 139 GGUGACCUCCCGGGAGCGGGGGACCACCA ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1JID A 1 ? 120 ? P09132 1 ? 120 ? 1 120 2 2 1JID B 1 ? 29 ? 36086 139 ? 167 ? 135 163 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1JID LEU A 121 ? UNP P09132 ? ? 'expression tag' 121 1 1 1JID GLU A 122 ? UNP P09132 ? ? 'expression tag' 122 2 1 1JID HIS A 123 ? UNP P09132 ? ? 'expression tag' 123 3 1 1JID HIS A 124 ? UNP P09132 ? ? 'expression tag' 124 4 1 1JID HIS A 125 ? UNP P09132 ? ? 'expression tag' 125 5 1 1JID HIS A 126 ? UNP P09132 ? ? 'expression tag' 126 6 1 1JID HIS A 127 ? UNP P09132 ? ? 'expression tag' 127 7 1 1JID HIS A 128 ? UNP P09132 ? ? 'expression tag' 128 8 2 1JID U B 28 ? GB 36086 C 166 'engineered mutation' 162 9 2 1JID A23 B 29 ? GB 36086 A 167 'modified residue' 163 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5BU 'RNA linking' n "5-BROMO-URIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O9 P' 403.077 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 A23 'RNA linking' n ;ADENOSINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; ? 'C10 H13 N5 O9 P2' 409.186 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1JID _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 55 _exptl_crystal.density_Matthews 2.82 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;potassium chloride, magnesium chloride, sodium chloride, PEG 3350, isopropanol, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 KCl ? ? ? 1 2 1 MgCl2 ? ? ? 1 3 1 NaCl ? ? ? 1 4 1 'PEG 3350' ? ? ? 1 5 1 isopropanol ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2001-05-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator Silicium _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91902 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.91902 _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 # _reflns.entry_id 1JID _reflns.d_resolution_high 1.80 _reflns.d_resolution_low 49.75 _reflns.number_all 24024 _reflns.observed_criterion_sigma_F 0.0 _reflns.B_iso_Wilson_estimate 19.5 _reflns.observed_criterion_sigma_I 0.0 _reflns.number_obs 23784 _reflns.percent_possible_obs 91.5 _reflns.pdbx_Rmerge_I_obs 0.088 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.4 _reflns.pdbx_redundancy 7.8 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 61.2 _reflns_shell.Rmerge_I_obs 0.197 _reflns_shell.meanI_over_sigI_obs 2.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 3.8 _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1JID _refine.ls_number_reflns_all 25876 _refine.ls_number_reflns_obs 23740 _refine.ls_percent_reflns_obs 91.7 _refine.ls_d_res_high 1.80 _refine.ls_d_res_low 49.75 _refine.B_iso_mean 27.63 _refine.occupancy_min 0.35 _refine.occupancy_max 1.00 _refine.aniso_B[1][1] 14.07 _refine.aniso_B[2][2] -6.27 _refine.aniso_B[3][3] -7.79 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_param_bsol 65.4191 _refine.solvent_model_param_ksol 0.417491 _refine.solvent_model_details 'CNS bulk solvent model used' _refine.ls_R_factor_R_work 0.186 _refine.ls_R_factor_R_free 0.222 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_number_reflns_R_free 1142 _refine.ls_percent_reflns_R_free 4.8 _refine.details ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_ls_sigma_I 0.0 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'SAD with molecular replacement' _refine.pdbx_starting_model 'PDB ENTRY 1D4R' _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_isotropic_thermal_model ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1JID _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_obs 0.18 _refine_analyze.Luzzati_sigma_a_obs 0.20 _refine_analyze.Luzzati_coordinate_error_free 0.23 _refine_analyze.Luzzati_sigma_a_free 0.21 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 917 _refine_hist.pdbx_number_atoms_nucleic_acid 630 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 271 _refine_hist.number_atoms_total 1828 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 49.75 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.017 . ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 3.4 . ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 23.6 . ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 3.18 . ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it 1.94 1.50 ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it 2.70 2.00 ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 2.43 2.00 ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 3.41 2.50 ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 1.80 1.88 1940 63.9 0.26 0.262 0.026 100 3.1 8 . 'X-RAY DIFFRACTION' . . 1.88 1.98 2427 80.2 0.237 0.237 0.020 136 4.3 8 . 'X-RAY DIFFRACTION' . . 1.98 2.11 2898 94.5 0.206 0.205 0.018 133 4.1 8 . 'X-RAY DIFFRACTION' . . 2.11 2.27 3045 99.8 0.19 0.189 0.015 159 5.0 8 . 'X-RAY DIFFRACTION' . . 2.27 2.50 3058 99.8 0.172 0.172 0.014 155 4.8 8 . 'X-RAY DIFFRACTION' . . 2.50 2.86 3076 99.9 0.192 0.193 0.015 159 4.9 8 . 'X-RAY DIFFRACTION' . . 2.86 3.60 3073 99.1 0.18 0.179 0.014 158 4.8 8 . 'X-RAY DIFFRACTION' . . 3.60 49.75 3081 95.0 0.173 0.173 0.015 142 4.2 8 . 'X-RAY DIFFRACTION' . . # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 dna-rna-allatom-mod.param dna-rna-allatom-mod.top 'X-RAY DIFFRACTION' 3 water_rep.param water.top 'X-RAY DIFFRACTION' 4 mg3.param mg3.top 'X-RAY DIFFRACTION' # _struct.entry_id 1JID _struct.title 'Human SRP19 in complex with helix 6 of Human SRP RNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1JID _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN/RNA' _struct_keywords.text 'SIGNAL RECOGNITION PARTICLE (SRP), PROTEIN-RNA COMPLEX, GGAG TETRALOOP, SIGNALING PROTEIN-RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details 'The asymmetric unit contains one biological assembly' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP B 11 ? PHE B 15 ? ASP A 11 PHE A 15 5 ? 5 HELX_P HELX_P2 2 TYR B 19 ? LEU B 23 ? TYR A 19 LEU A 23 5 ? 5 HELX_P HELX_P3 3 THR B 45 ? VAL B 56 ? THR A 45 VAL A 56 1 ? 12 HELX_P HELX_P4 4 ASP B 75 ? ARG B 79 ? ASP A 75 ARG A 79 5 ? 5 HELX_P HELX_P5 5 SER B 100 ? ILE B 112 ? SER A 100 ILE A 112 1 ? 13 HELX_P HELX_P6 6 PRO B 113 ? LEU B 115 ? PRO A 113 LEU A 115 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A G 2 "O3'" ? ? ? 1_555 A 5BU 3 P ? ? B G 136 B 5BU 137 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale2 covale both ? A 5BU 3 "O3'" ? ? ? 1_555 A G 4 P ? ? B 5BU 137 B G 138 1_555 ? ? ? ? ? ? ? 1.576 ? ? covale3 covale both ? A C 7 "O3'" ? ? ? 1_555 A 5BU 8 P ? ? B C 141 B 5BU 142 1_555 ? ? ? ? ? ? ? 1.589 ? ? covale4 covale both ? A 5BU 8 "O3'" ? ? ? 1_555 A C 9 P ? ? B 5BU 142 B C 143 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale5 covale both ? A U 28 "O3'" ? ? ? 1_555 A A23 29 P ? ? B U 162 B A23 163 1_555 ? ? ? ? ? ? ? 1.621 ? ? metalc1 metalc ? ? A 5BU 8 O4 ? ? ? 1_555 C MG . MG ? ? B 5BU 142 B MG 301 1_555 ? ? ? ? ? ? ? 2.968 ? ? metalc2 metalc ? ? A G 18 O6 ? ? ? 1_555 D MG . MG ? ? B G 152 B MG 302 1_555 ? ? ? ? ? ? ? 2.799 ? ? metalc3 metalc ? ? A G 19 O6 ? ? ? 1_555 D MG . MG ? ? B G 153 B MG 302 1_555 ? ? ? ? ? ? ? 2.711 ? ? metalc4 metalc ? ? A G 20 O6 ? ? ? 1_555 C MG . MG ? ? B G 154 B MG 301 1_555 ? ? ? ? ? ? ? 2.942 ? ? metalc5 metalc ? ? A G 21 O6 ? ? ? 1_555 C MG . MG ? ? B G 155 B MG 301 1_555 ? ? ? ? ? ? ? 2.577 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? B MG 301 B HOH 303 1_555 ? ? ? ? ? ? ? 2.252 ? ? metalc7 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? B MG 301 B HOH 304 1_555 ? ? ? ? ? ? ? 2.259 ? ? metalc8 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? B MG 301 B HOH 305 1_555 ? ? ? ? ? ? ? 2.241 ? ? metalc9 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? B MG 302 B HOH 306 1_555 ? ? ? ? ? ? ? 2.294 ? ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? B MG 302 B HOH 307 1_555 ? ? ? ? ? ? ? 2.262 ? ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? B MG 302 B HOH 308 1_555 ? ? ? ? ? ? ? 2.260 ? ? metalc12 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? B MG 302 B HOH 320 1_555 ? ? ? ? ? ? ? 2.978 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A U 28 O2 ? ? B G 135 B U 162 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog2 hydrog ? ? A G 1 O6 ? ? ? 1_555 A U 28 N3 ? ? B G 135 B U 162 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog3 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 27 N3 ? ? B G 136 B C 161 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 27 O2 ? ? B G 136 B C 161 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 27 N4 ? ? B G 136 B C 161 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A 5BU 3 N3 ? ? ? 1_555 A A 26 N1 ? ? B 5BU 137 B A 160 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A 5BU 3 O4 ? ? ? 1_555 A A 26 N6 ? ? B 5BU 137 B A 160 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 25 N3 ? ? B G 138 B C 159 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 25 O2 ? ? B G 138 B C 159 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 25 N4 ? ? B G 138 B C 159 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 5 N6 ? ? ? 1_555 A C 24 O2 ? ? B A 139 B C 158 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog12 hydrog ? ? A C 6 N3 ? ? ? 1_555 A A 23 N6 ? ? B C 140 B A 157 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog13 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 22 N1 ? ? B C 141 B G 156 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 22 O6 ? ? B C 141 B G 156 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 22 N2 ? ? B C 141 B G 156 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A 5BU 8 N3 ? ? ? 1_555 A G 21 O6 ? ? B 5BU 142 B G 155 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog17 hydrog ? ? A 5BU 8 O2 ? ? ? 1_555 A G 21 N1 ? ? B 5BU 142 B G 155 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog18 hydrog ? ? A C 9 N3 ? ? ? 1_555 A G 20 N1 ? ? B C 143 B G 154 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 9 N4 ? ? ? 1_555 A G 20 O6 ? ? B C 143 B G 154 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 9 O2 ? ? ? 1_555 A G 20 N2 ? ? B C 143 B G 154 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 19 N1 ? ? B C 144 B G 153 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 19 O6 ? ? B C 144 B G 153 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 19 N2 ? ? B C 144 B G 153 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 18 N1 ? ? B C 145 B G 152 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 18 O6 ? ? B C 145 B G 152 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 18 N2 ? ? B C 145 B G 152 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 17 N3 ? ? B G 146 B C 151 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 17 O2 ? ? B G 146 B C 151 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 17 N4 ? ? B G 146 B C 151 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE B 16 ? ILE B 18 ? ILE A 16 ILE A 18 A 2 ARG B 81 ? VAL B 84 ? ARG A 81 VAL A 84 A 3 VAL B 60 ? GLU B 63 ? VAL A 60 GLU A 63 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE B 18 ? O ILE A 18 N VAL B 82 ? N VAL A 82 A 2 3 N ARG B 83 ? N ARG A 83 O PHE B 61 ? O PHE A 61 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B MG 301 ? 7 'BINDING SITE FOR RESIDUE MG B 301' AC2 Software B MG 302 ? 6 'BINDING SITE FOR RESIDUE MG B 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 5BU A 8 ? 5BU B 142 . ? 1_555 ? 2 AC1 7 G A 20 ? G B 154 . ? 1_555 ? 3 AC1 7 G A 21 ? G B 155 . ? 1_555 ? 4 AC1 7 G A 22 ? G B 156 . ? 1_555 ? 5 AC1 7 HOH E . ? HOH B 303 . ? 1_555 ? 6 AC1 7 HOH E . ? HOH B 304 . ? 1_555 ? 7 AC1 7 HOH E . ? HOH B 305 . ? 1_555 ? 8 AC2 6 G A 18 ? G B 152 . ? 1_555 ? 9 AC2 6 G A 19 ? G B 153 . ? 1_555 ? 10 AC2 6 HOH E . ? HOH B 306 . ? 1_555 ? 11 AC2 6 HOH E . ? HOH B 307 . ? 1_555 ? 12 AC2 6 HOH E . ? HOH B 308 . ? 1_555 ? 13 AC2 6 HOH E . ? HOH B 320 . ? 1_555 ? # _atom_sites.entry_id 1JID _atom_sites.fract_transf_matrix[1][1] 0.017917 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009109 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011178 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol BR C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 135 1 G G B . n A 1 2 G 2 136 2 G G B . n A 1 3 5BU 3 137 3 5BU +U B . n A 1 4 G 4 138 4 G G B . n A 1 5 A 5 139 5 A A B . n A 1 6 C 6 140 6 C C B . n A 1 7 C 7 141 7 C C B . n A 1 8 5BU 8 142 8 5BU +U B . n A 1 9 C 9 143 9 C C B . n A 1 10 C 10 144 10 C C B . n A 1 11 C 11 145 11 C C B . n A 1 12 G 12 146 12 G G B . n A 1 13 G 13 147 13 G G B . n A 1 14 G 14 148 14 G G B . n A 1 15 A 15 149 15 A A B . n A 1 16 G 16 150 16 G G B . n A 1 17 C 17 151 17 C C B . n A 1 18 G 18 152 18 G G B . n A 1 19 G 19 153 19 G G B . n A 1 20 G 20 154 20 G G B . n A 1 21 G 21 155 21 G G B . n A 1 22 G 22 156 22 G G B . n A 1 23 A 23 157 23 A A B . n A 1 24 C 24 158 24 C C B . n A 1 25 C 25 159 25 C C B . n A 1 26 A 26 160 26 A A B . n A 1 27 C 27 161 27 C C B . n A 1 28 U 28 162 28 U U B . n A 1 29 A23 29 163 29 A23 A23 B . n B 2 1 MET 1 1 ? ? ? A . n B 2 2 ALA 2 2 ? ? ? A . n B 2 3 CYS 3 3 ? ? ? A . n B 2 4 ALA 4 4 ? ? ? A . n B 2 5 ALA 5 5 1 ALA ALA A . n B 2 6 ALA 6 6 2 ALA ALA A . n B 2 7 ARG 7 7 3 ARG ARG A . n B 2 8 SER 8 8 4 SER SER A . n B 2 9 PRO 9 9 5 PRO PRO A . n B 2 10 ALA 10 10 6 ALA ALA A . n B 2 11 ASP 11 11 7 ASP ASP A . n B 2 12 GLN 12 12 8 GLN GLN A . n B 2 13 ASP 13 13 9 ASP ASP A . n B 2 14 ARG 14 14 10 ARG ARG A . n B 2 15 PHE 15 15 11 PHE PHE A . n B 2 16 ILE 16 16 12 ILE ILE A . n B 2 17 CYS 17 17 13 CYS CYS A . n B 2 18 ILE 18 18 14 ILE ILE A . n B 2 19 TYR 19 19 15 TYR TYR A . n B 2 20 PRO 20 20 16 PRO PRO A . n B 2 21 ALA 21 21 17 ALA ALA A . n B 2 22 TYR 22 22 18 TYR TYR A . n B 2 23 LEU 23 23 19 LEU LEU A . n B 2 24 ASN 24 24 20 ASN ASN A . n B 2 25 ASN 25 25 21 ASN ASN A . n B 2 26 LYS 26 26 22 LYS LYS A . n B 2 27 LYS 27 27 23 LYS LYS A . n B 2 28 THR 28 28 24 THR THR A . n B 2 29 ILE 29 29 25 ILE ILE A . n B 2 30 ALA 30 30 26 ALA ALA A . n B 2 31 GLU 31 31 27 GLU GLU A . n B 2 32 GLY 32 32 28 GLY GLY A . n B 2 33 ARG 33 33 29 ARG ARG A . n B 2 34 ARG 34 34 30 ARG ARG A . n B 2 35 ILE 35 35 31 ILE ILE A . n B 2 36 PRO 36 36 32 PRO PRO A . n B 2 37 ILE 37 37 33 ILE ILE A . n B 2 38 SER 38 38 34 SER SER A . n B 2 39 LYS 39 39 35 LYS LYS A . n B 2 40 ALA 40 40 36 ALA ALA A . n B 2 41 VAL 41 41 37 VAL VAL A . n B 2 42 GLU 42 42 38 GLU GLU A . n B 2 43 ASN 43 43 39 ASN ASN A . n B 2 44 PRO 44 44 40 PRO PRO A . n B 2 45 THR 45 45 41 THR THR A . n B 2 46 ALA 46 46 42 ALA ALA A . n B 2 47 THR 47 47 43 THR THR A . n B 2 48 GLU 48 48 44 GLU GLU A . n B 2 49 ILE 49 49 45 ILE ILE A . n B 2 50 GLN 50 50 46 GLN GLN A . n B 2 51 ASP 51 51 47 ASP ASP A . n B 2 52 VAL 52 52 48 VAL VAL A . n B 2 53 CYS 53 53 49 CYS CYS A . n B 2 54 SER 54 54 50 SER SER A . n B 2 55 ALA 55 55 51 ALA ALA A . n B 2 56 VAL 56 56 52 VAL VAL A . n B 2 57 GLY 57 57 53 GLY GLY A . n B 2 58 LEU 58 58 54 LEU LEU A . n B 2 59 ASN 59 59 55 ASN ASN A . n B 2 60 VAL 60 60 56 VAL VAL A . n B 2 61 PHE 61 61 57 PHE PHE A . n B 2 62 LEU 62 62 58 LEU LEU A . n B 2 63 GLU 63 63 59 GLU GLU A . n B 2 64 LYS 64 64 60 LYS LYS A . n B 2 65 ASN 65 65 61 ASN ASN A . n B 2 66 LYS 66 66 62 LYS LYS A . n B 2 67 MET 67 67 63 MET MET A . n B 2 68 TYR 68 68 64 TYR TYR A . n B 2 69 SER 69 69 65 SER SER A . n B 2 70 ARG 70 70 66 ARG ARG A . n B 2 71 GLU 71 71 67 GLU GLU A . n B 2 72 TRP 72 72 68 TRP TRP A . n B 2 73 ASN 73 73 69 ASN ASN A . n B 2 74 ARG 74 74 70 ARG ARG A . n B 2 75 ASP 75 75 71 ASP ASP A . n B 2 76 VAL 76 76 72 VAL VAL A . n B 2 77 GLN 77 77 73 GLN GLN A . n B 2 78 TYR 78 78 74 TYR TYR A . n B 2 79 ARG 79 79 75 ARG ARG A . n B 2 80 GLY 80 80 76 GLY GLY A . n B 2 81 ARG 81 81 77 ARG ARG A . n B 2 82 VAL 82 82 78 VAL VAL A . n B 2 83 ARG 83 83 79 ARG ARG A . n B 2 84 VAL 84 84 80 VAL VAL A . n B 2 85 GLN 85 85 81 GLN GLN A . n B 2 86 LEU 86 86 82 LEU LEU A . n B 2 87 LYS 87 87 83 LYS LYS A . n B 2 88 GLN 88 88 84 GLN GLN A . n B 2 89 GLU 89 89 85 GLU GLU A . n B 2 90 ASP 90 90 86 ASP ASP A . n B 2 91 GLY 91 91 87 GLY GLY A . n B 2 92 SER 92 92 88 SER SER A . n B 2 93 LEU 93 93 89 LEU LEU A . n B 2 94 CYS 94 94 90 CYS CYS A . n B 2 95 LEU 95 95 91 LEU LEU A . n B 2 96 VAL 96 96 92 VAL VAL A . n B 2 97 GLN 97 97 93 GLN GLN A . n B 2 98 PHE 98 98 94 PHE PHE A . n B 2 99 PRO 99 99 95 PRO PRO A . n B 2 100 SER 100 100 96 SER SER A . n B 2 101 ARG 101 101 97 ARG ARG A . n B 2 102 LYS 102 102 98 LYS LYS A . n B 2 103 SER 103 103 99 SER SER A . n B 2 104 VAL 104 104 100 VAL VAL A . n B 2 105 MET 105 105 101 MET MET A . n B 2 106 LEU 106 106 102 LEU LEU A . n B 2 107 TYR 107 107 103 TYR TYR A . n B 2 108 ALA 108 108 104 ALA ALA A . n B 2 109 ALA 109 109 105 ALA ALA A . n B 2 110 GLU 110 110 106 GLU GLU A . n B 2 111 MET 111 111 107 MET MET A . n B 2 112 ILE 112 112 108 ILE ILE A . n B 2 113 PRO 113 113 109 PRO PRO A . n B 2 114 LYS 114 114 110 LYS LYS A . n B 2 115 LEU 115 115 111 LEU LEU A . n B 2 116 LYS 116 116 112 LYS LYS A . n B 2 117 THR 117 117 113 THR THR A . n B 2 118 ARG 118 118 114 ARG ARG A . n B 2 119 THR 119 119 ? ? ? A . n B 2 120 GLN 120 120 ? ? ? A . n B 2 121 LEU 121 121 ? ? ? A . n B 2 122 GLU 122 122 ? ? ? A . n B 2 123 HIS 123 123 ? ? ? A . n B 2 124 HIS 124 124 ? ? ? A . n B 2 125 HIS 125 125 ? ? ? A . n B 2 126 HIS 126 126 ? ? ? A . n B 2 127 HIS 127 127 ? ? ? A . n B 2 128 HIS 128 128 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 301 1 MG MO3 B . D 3 MG 1 302 2 MG MO3 B . E 4 HOH 1 303 1 HOH MO3 B . E 4 HOH 2 304 1 HOH MO3 B . E 4 HOH 3 305 1 HOH MO3 B . E 4 HOH 4 306 2 HOH MO3 B . E 4 HOH 5 307 2 HOH MO3 B . E 4 HOH 6 308 2 HOH MO3 B . E 4 HOH 7 309 3 HOH TIP B . E 4 HOH 8 310 5 HOH TIP B . E 4 HOH 9 311 7 HOH TIP B . E 4 HOH 10 312 8 HOH TIP B . E 4 HOH 11 313 11 HOH TIP B . E 4 HOH 12 314 14 HOH TIP B . E 4 HOH 13 315 18 HOH TIP B . E 4 HOH 14 316 19 HOH TIP B . E 4 HOH 15 317 20 HOH TIP B . E 4 HOH 16 318 24 HOH TIP B . E 4 HOH 17 319 25 HOH TIP B . E 4 HOH 18 320 29 HOH TIP B . E 4 HOH 19 321 30 HOH TIP B . E 4 HOH 20 322 31 HOH TIP B . E 4 HOH 21 323 32 HOH TIP B . E 4 HOH 22 324 34 HOH TIP B . E 4 HOH 23 325 39 HOH TIP B . E 4 HOH 24 326 41 HOH TIP B . E 4 HOH 25 327 42 HOH TIP B . E 4 HOH 26 328 44 HOH TIP B . E 4 HOH 27 329 46 HOH TIP B . E 4 HOH 28 330 47 HOH TIP B . E 4 HOH 29 331 48 HOH TIP B . E 4 HOH 30 332 50 HOH TIP B . E 4 HOH 31 333 56 HOH TIP B . E 4 HOH 32 334 57 HOH TIP B . E 4 HOH 33 335 58 HOH TIP B . E 4 HOH 34 336 59 HOH TIP B . E 4 HOH 35 337 61 HOH TIP B . E 4 HOH 36 338 63 HOH TIP B . E 4 HOH 37 339 64 HOH TIP B . E 4 HOH 38 340 65 HOH TIP B . E 4 HOH 39 341 71 HOH TIP B . E 4 HOH 40 342 73 HOH TIP B . E 4 HOH 41 343 74 HOH TIP B . E 4 HOH 42 344 76 HOH TIP B . E 4 HOH 43 345 77 HOH TIP B . E 4 HOH 44 346 79 HOH TIP B . E 4 HOH 45 347 80 HOH TIP B . E 4 HOH 46 348 81 HOH TIP B . E 4 HOH 47 349 82 HOH TIP B . E 4 HOH 48 350 89 HOH TIP B . E 4 HOH 49 351 90 HOH TIP B . E 4 HOH 50 352 93 HOH TIP B . E 4 HOH 51 353 94 HOH TIP B . E 4 HOH 52 354 96 HOH TIP B . E 4 HOH 53 355 97 HOH TIP B . E 4 HOH 54 356 98 HOH TIP B . E 4 HOH 55 357 101 HOH TIP B . E 4 HOH 56 358 104 HOH TIP B . E 4 HOH 57 359 105 HOH TIP B . E 4 HOH 58 360 106 HOH TIP B . E 4 HOH 59 361 107 HOH TIP B . E 4 HOH 60 362 108 HOH TIP B . E 4 HOH 61 363 111 HOH TIP B . E 4 HOH 62 364 114 HOH TIP B . E 4 HOH 63 365 115 HOH TIP B . E 4 HOH 64 366 116 HOH TIP B . E 4 HOH 65 367 119 HOH TIP B . E 4 HOH 66 368 122 HOH TIP B . E 4 HOH 67 369 123 HOH TIP B . E 4 HOH 68 370 124 HOH TIP B . E 4 HOH 69 371 130 HOH TIP B . E 4 HOH 70 372 131 HOH TIP B . E 4 HOH 71 373 132 HOH TIP B . E 4 HOH 72 374 133 HOH TIP B . E 4 HOH 73 375 135 HOH TIP B . E 4 HOH 74 376 136 HOH TIP B . E 4 HOH 75 377 138 HOH TIP B . E 4 HOH 76 378 139 HOH TIP B . E 4 HOH 77 379 145 HOH TIP B . E 4 HOH 78 380 146 HOH TIP B . E 4 HOH 79 381 148 HOH TIP B . E 4 HOH 80 382 149 HOH TIP B . E 4 HOH 81 383 150 HOH TIP B . E 4 HOH 82 384 151 HOH TIP B . E 4 HOH 83 385 154 HOH TIP B . E 4 HOH 84 386 155 HOH TIP B . E 4 HOH 85 387 156 HOH TIP B . E 4 HOH 86 388 157 HOH TIP B . E 4 HOH 87 389 158 HOH TIP B . E 4 HOH 88 390 161 HOH TIP B . E 4 HOH 89 391 165 HOH TIP B . E 4 HOH 90 392 166 HOH TIP B . E 4 HOH 91 393 169 HOH TIP B . E 4 HOH 92 394 177 HOH TIP B . E 4 HOH 93 395 178 HOH TIP B . E 4 HOH 94 396 179 HOH TIP B . E 4 HOH 95 397 186 HOH TIP B . E 4 HOH 96 398 191 HOH TIP B . E 4 HOH 97 399 193 HOH TIP B . E 4 HOH 98 400 196 HOH TIP B . E 4 HOH 99 401 203 HOH TIP B . E 4 HOH 100 402 206 HOH TIP B . E 4 HOH 101 403 208 HOH TIP B . E 4 HOH 102 404 209 HOH TIP B . E 4 HOH 103 405 222 HOH TIP B . E 4 HOH 104 406 223 HOH TIP B . E 4 HOH 105 407 224 HOH TIP B . E 4 HOH 106 408 227 HOH TIP B . E 4 HOH 107 409 228 HOH TIP B . E 4 HOH 108 410 229 HOH TIP B . E 4 HOH 109 411 233 HOH TIP B . E 4 HOH 110 412 235 HOH TIP B . E 4 HOH 111 413 236 HOH TIP B . E 4 HOH 112 414 239 HOH TIP B . E 4 HOH 113 415 240 HOH TIP B . E 4 HOH 114 416 241 HOH TIP B . E 4 HOH 115 417 242 HOH TIP B . E 4 HOH 116 418 243 HOH TIP B . E 4 HOH 117 419 246 HOH TIP B . E 4 HOH 118 420 247 HOH TIP B . E 4 HOH 119 421 250 HOH TIP B . E 4 HOH 120 422 251 HOH TIP B . E 4 HOH 121 423 253 HOH TIP B . E 4 HOH 122 424 254 HOH TIP B . E 4 HOH 123 425 256 HOH TIP B . E 4 HOH 124 426 259 HOH TIP B . E 4 HOH 125 427 260 HOH TIP B . E 4 HOH 126 428 263 HOH TIP B . E 4 HOH 127 429 265 HOH TIP B . E 4 HOH 128 430 269 HOH TIP B . E 4 HOH 129 431 270 HOH TIP B . F 4 HOH 1 129 1 HOH TIP A . F 4 HOH 2 130 2 HOH TIP A . F 4 HOH 3 131 4 HOH TIP A . F 4 HOH 4 132 6 HOH TIP A . F 4 HOH 5 133 9 HOH TIP A . F 4 HOH 6 134 10 HOH TIP A . F 4 HOH 7 135 12 HOH TIP A . F 4 HOH 8 136 13 HOH TIP A . F 4 HOH 9 137 15 HOH TIP A . F 4 HOH 10 138 16 HOH TIP A . F 4 HOH 11 139 17 HOH TIP A . F 4 HOH 12 140 21 HOH TIP A . F 4 HOH 13 141 22 HOH TIP A . F 4 HOH 14 142 23 HOH TIP A . F 4 HOH 15 143 26 HOH TIP A . F 4 HOH 16 144 27 HOH TIP A . F 4 HOH 17 145 28 HOH TIP A . F 4 HOH 18 146 33 HOH TIP A . F 4 HOH 19 147 35 HOH TIP A . F 4 HOH 20 148 36 HOH TIP A . F 4 HOH 21 149 37 HOH TIP A . F 4 HOH 22 150 38 HOH TIP A . F 4 HOH 23 151 40 HOH TIP A . F 4 HOH 24 152 43 HOH TIP A . F 4 HOH 25 153 45 HOH TIP A . F 4 HOH 26 154 49 HOH TIP A . F 4 HOH 27 155 51 HOH TIP A . F 4 HOH 28 156 52 HOH TIP A . F 4 HOH 29 157 53 HOH TIP A . F 4 HOH 30 158 54 HOH TIP A . F 4 HOH 31 159 55 HOH TIP A . F 4 HOH 32 160 60 HOH TIP A . F 4 HOH 33 161 62 HOH TIP A . F 4 HOH 34 162 66 HOH TIP A . F 4 HOH 35 163 67 HOH TIP A . F 4 HOH 36 164 68 HOH TIP A . F 4 HOH 37 165 69 HOH TIP A . F 4 HOH 38 166 70 HOH TIP A . F 4 HOH 39 167 72 HOH TIP A . F 4 HOH 40 168 75 HOH TIP A . F 4 HOH 41 169 78 HOH TIP A . F 4 HOH 42 170 83 HOH TIP A . F 4 HOH 43 171 84 HOH TIP A . F 4 HOH 44 172 85 HOH TIP A . F 4 HOH 45 173 86 HOH TIP A . F 4 HOH 46 174 87 HOH TIP A . F 4 HOH 47 175 88 HOH TIP A . F 4 HOH 48 176 91 HOH TIP A . F 4 HOH 49 177 92 HOH TIP A . F 4 HOH 50 178 95 HOH TIP A . F 4 HOH 51 179 99 HOH TIP A . F 4 HOH 52 180 100 HOH TIP A . F 4 HOH 53 181 102 HOH TIP A . F 4 HOH 54 182 103 HOH TIP A . F 4 HOH 55 183 109 HOH TIP A . F 4 HOH 56 184 110 HOH TIP A . F 4 HOH 57 185 112 HOH TIP A . F 4 HOH 58 186 113 HOH TIP A . F 4 HOH 59 187 117 HOH TIP A . F 4 HOH 60 188 118 HOH TIP A . F 4 HOH 61 189 120 HOH TIP A . F 4 HOH 62 190 121 HOH TIP A . F 4 HOH 63 191 125 HOH TIP A . F 4 HOH 64 192 126 HOH TIP A . F 4 HOH 65 193 127 HOH TIP A . F 4 HOH 66 194 128 HOH TIP A . F 4 HOH 67 195 129 HOH TIP A . F 4 HOH 68 196 134 HOH TIP A . F 4 HOH 69 197 137 HOH TIP A . F 4 HOH 70 198 140 HOH TIP A . F 4 HOH 71 199 141 HOH TIP A . F 4 HOH 72 200 142 HOH TIP A . F 4 HOH 73 201 143 HOH TIP A . F 4 HOH 74 202 144 HOH TIP A . F 4 HOH 75 203 147 HOH TIP A . F 4 HOH 76 204 152 HOH TIP A . F 4 HOH 77 205 153 HOH TIP A . F 4 HOH 78 206 159 HOH TIP A . F 4 HOH 79 207 160 HOH TIP A . F 4 HOH 80 208 162 HOH TIP A . F 4 HOH 81 209 163 HOH TIP A . F 4 HOH 82 210 164 HOH TIP A . F 4 HOH 83 211 167 HOH TIP A . F 4 HOH 84 212 168 HOH TIP A . F 4 HOH 85 213 170 HOH TIP A . F 4 HOH 86 214 171 HOH TIP A . F 4 HOH 87 215 172 HOH TIP A . F 4 HOH 88 216 173 HOH TIP A . F 4 HOH 89 217 174 HOH TIP A . F 4 HOH 90 218 175 HOH TIP A . F 4 HOH 91 219 176 HOH TIP A . F 4 HOH 92 220 180 HOH TIP A . F 4 HOH 93 221 181 HOH TIP A . F 4 HOH 94 222 182 HOH TIP A . F 4 HOH 95 223 183 HOH TIP A . F 4 HOH 96 224 184 HOH TIP A . F 4 HOH 97 225 185 HOH TIP A . F 4 HOH 98 226 187 HOH TIP A . F 4 HOH 99 227 188 HOH TIP A . F 4 HOH 100 228 189 HOH TIP A . F 4 HOH 101 229 190 HOH TIP A . F 4 HOH 102 230 192 HOH TIP A . F 4 HOH 103 231 194 HOH TIP A . F 4 HOH 104 232 195 HOH TIP A . F 4 HOH 105 233 197 HOH TIP A . F 4 HOH 106 234 198 HOH TIP A . F 4 HOH 107 235 199 HOH TIP A . F 4 HOH 108 236 200 HOH TIP A . F 4 HOH 109 237 201 HOH TIP A . F 4 HOH 110 238 202 HOH TIP A . F 4 HOH 111 239 204 HOH TIP A . F 4 HOH 112 240 205 HOH TIP A . F 4 HOH 113 241 207 HOH TIP A . F 4 HOH 114 242 210 HOH TIP A . F 4 HOH 115 243 211 HOH TIP A . F 4 HOH 116 244 212 HOH TIP A . F 4 HOH 117 245 213 HOH TIP A . F 4 HOH 118 246 214 HOH TIP A . F 4 HOH 119 247 215 HOH TIP A . F 4 HOH 120 248 216 HOH TIP A . F 4 HOH 121 249 217 HOH TIP A . F 4 HOH 122 250 218 HOH TIP A . F 4 HOH 123 251 219 HOH TIP A . F 4 HOH 124 252 220 HOH TIP A . F 4 HOH 125 253 221 HOH TIP A . F 4 HOH 126 254 225 HOH TIP A . F 4 HOH 127 255 226 HOH TIP A . F 4 HOH 128 256 230 HOH TIP A . F 4 HOH 129 257 231 HOH TIP A . F 4 HOH 130 258 232 HOH TIP A . F 4 HOH 131 259 234 HOH TIP A . F 4 HOH 132 260 237 HOH TIP A . F 4 HOH 133 261 238 HOH TIP A . F 4 HOH 134 262 244 HOH TIP A . F 4 HOH 135 263 245 HOH TIP A . F 4 HOH 136 264 248 HOH TIP A . F 4 HOH 137 265 249 HOH TIP A . F 4 HOH 138 266 252 HOH TIP A . F 4 HOH 139 267 255 HOH TIP A . F 4 HOH 140 268 257 HOH TIP A . F 4 HOH 141 269 258 HOH TIP A . F 4 HOH 142 270 261 HOH TIP A . F 4 HOH 143 271 262 HOH TIP A . F 4 HOH 144 272 264 HOH TIP A . F 4 HOH 145 273 266 HOH TIP A . F 4 HOH 146 274 267 HOH TIP A . F 4 HOH 147 275 268 HOH TIP A . F 4 HOH 148 276 271 HOH TIP A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 5BU 3 B 5BU 137 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" 2 A 5BU 8 B 5BU 142 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" 3 A A23 29 B A23 163 ? A ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O4 ? A 5BU 8 ? B 5BU 142 ? 1_555 MG ? C MG . ? B MG 301 ? 1_555 O6 ? A G 20 ? B G 154 ? 1_555 103.5 ? 2 O4 ? A 5BU 8 ? B 5BU 142 ? 1_555 MG ? C MG . ? B MG 301 ? 1_555 O6 ? A G 21 ? B G 155 ? 1_555 76.4 ? 3 O6 ? A G 20 ? B G 154 ? 1_555 MG ? C MG . ? B MG 301 ? 1_555 O6 ? A G 21 ? B G 155 ? 1_555 83.4 ? 4 O4 ? A 5BU 8 ? B 5BU 142 ? 1_555 MG ? C MG . ? B MG 301 ? 1_555 O ? E HOH . ? B HOH 303 ? 1_555 109.7 ? 5 O6 ? A G 20 ? B G 154 ? 1_555 MG ? C MG . ? B MG 301 ? 1_555 O ? E HOH . ? B HOH 303 ? 1_555 139.9 ? 6 O6 ? A G 21 ? B G 155 ? 1_555 MG ? C MG . ? B MG 301 ? 1_555 O ? E HOH . ? B HOH 303 ? 1_555 125.6 ? 7 O4 ? A 5BU 8 ? B 5BU 142 ? 1_555 MG ? C MG . ? B MG 301 ? 1_555 O ? E HOH . ? B HOH 304 ? 1_555 159.7 ? 8 O6 ? A G 20 ? B G 154 ? 1_555 MG ? C MG . ? B MG 301 ? 1_555 O ? E HOH . ? B HOH 304 ? 1_555 79.2 ? 9 O6 ? A G 21 ? B G 155 ? 1_555 MG ? C MG . ? B MG 301 ? 1_555 O ? E HOH . ? B HOH 304 ? 1_555 84.0 ? 10 O ? E HOH . ? B HOH 303 ? 1_555 MG ? C MG . ? B MG 301 ? 1_555 O ? E HOH . ? B HOH 304 ? 1_555 77.5 ? 11 O4 ? A 5BU 8 ? B 5BU 142 ? 1_555 MG ? C MG . ? B MG 301 ? 1_555 O ? E HOH . ? B HOH 305 ? 1_555 98.2 ? 12 O6 ? A G 20 ? B G 154 ? 1_555 MG ? C MG . ? B MG 301 ? 1_555 O ? E HOH . ? B HOH 305 ? 1_555 68.2 ? 13 O6 ? A G 21 ? B G 155 ? 1_555 MG ? C MG . ? B MG 301 ? 1_555 O ? E HOH . ? B HOH 305 ? 1_555 149.2 ? 14 O ? E HOH . ? B HOH 303 ? 1_555 MG ? C MG . ? B MG 301 ? 1_555 O ? E HOH . ? B HOH 305 ? 1_555 85.0 ? 15 O ? E HOH . ? B HOH 304 ? 1_555 MG ? C MG . ? B MG 301 ? 1_555 O ? E HOH . ? B HOH 305 ? 1_555 101.4 ? 16 O6 ? A G 18 ? B G 152 ? 1_555 MG ? D MG . ? B MG 302 ? 1_555 O6 ? A G 19 ? B G 153 ? 1_555 74.4 ? 17 O6 ? A G 18 ? B G 152 ? 1_555 MG ? D MG . ? B MG 302 ? 1_555 O ? E HOH . ? B HOH 306 ? 1_555 141.8 ? 18 O6 ? A G 19 ? B G 153 ? 1_555 MG ? D MG . ? B MG 302 ? 1_555 O ? E HOH . ? B HOH 306 ? 1_555 67.4 ? 19 O6 ? A G 18 ? B G 152 ? 1_555 MG ? D MG . ? B MG 302 ? 1_555 O ? E HOH . ? B HOH 307 ? 1_555 77.0 ? 20 O6 ? A G 19 ? B G 153 ? 1_555 MG ? D MG . ? B MG 302 ? 1_555 O ? E HOH . ? B HOH 307 ? 1_555 107.4 ? 21 O ? E HOH . ? B HOH 306 ? 1_555 MG ? D MG . ? B MG 302 ? 1_555 O ? E HOH . ? B HOH 307 ? 1_555 113.3 ? 22 O6 ? A G 18 ? B G 152 ? 1_555 MG ? D MG . ? B MG 302 ? 1_555 O ? E HOH . ? B HOH 308 ? 1_555 99.1 ? 23 O6 ? A G 19 ? B G 153 ? 1_555 MG ? D MG . ? B MG 302 ? 1_555 O ? E HOH . ? B HOH 308 ? 1_555 88.6 ? 24 O ? E HOH . ? B HOH 306 ? 1_555 MG ? D MG . ? B MG 302 ? 1_555 O ? E HOH . ? B HOH 308 ? 1_555 81.2 ? 25 O ? E HOH . ? B HOH 307 ? 1_555 MG ? D MG . ? B MG 302 ? 1_555 O ? E HOH . ? B HOH 308 ? 1_555 161.4 ? 26 O6 ? A G 18 ? B G 152 ? 1_555 MG ? D MG . ? B MG 302 ? 1_555 O ? E HOH . ? B HOH 320 ? 1_555 81.3 ? 27 O6 ? A G 19 ? B G 153 ? 1_555 MG ? D MG . ? B MG 302 ? 1_555 O ? E HOH . ? B HOH 320 ? 1_555 150.3 ? 28 O ? E HOH . ? B HOH 306 ? 1_555 MG ? D MG . ? B MG 302 ? 1_555 O ? E HOH . ? B HOH 320 ? 1_555 135.0 ? 29 O ? E HOH . ? B HOH 307 ? 1_555 MG ? D MG . ? B MG 302 ? 1_555 O ? E HOH . ? B HOH 320 ? 1_555 82.9 ? 30 O ? E HOH . ? B HOH 308 ? 1_555 MG ? D MG . ? B MG 302 ? 1_555 O ? E HOH . ? B HOH 320 ? 1_555 78.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-10-19 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-10-27 5 'Structure model' 1 4 2023-08-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_conn_angle 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_conn_type 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond 9 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.value' 18 4 'Structure model' '_struct_conn.conn_type_id' 19 4 'Structure model' '_struct_conn.id' 20 4 'Structure model' '_struct_conn.pdbx_dist_value' 21 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 22 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 34 4 'Structure model' '_struct_conn_type.id' 35 4 'Structure model' '_struct_ref_seq_dif.details' 36 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 37 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 38 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _refine_B_iso.class _refine_B_iso.treatment _refine_B_iso.details _refine_B_iso.pdbx_refine_id polymer isotropic ? 'X-RAY DIFFRACTION' nonpolymer isotropic ? 'X-RAY DIFFRACTION' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.location _software.classification _software.language _software.citation_id _software.pdbx_ordinal CNS 1.0 1998 package 'Axel T. Brunger' axel.brunger@yale.edu . refinement Fortran ? 1 DENZO . ? ? ? ? ? 'data reduction' ? ? 2 SCALEPACK . ? ? ? ? ? 'data scaling' ? ? 3 CNS . ? ? ? ? ? phasing ? ? 4 SHARP . ? ? ? ? ? phasing ? ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ARG _pdbx_validate_close_contact.auth_seq_id_1 118 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 213 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O5'" _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 A _pdbx_validate_rmsd_bond.auth_seq_id_1 157 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C5'" _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 A _pdbx_validate_rmsd_bond.auth_seq_id_2 157 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.364 _pdbx_validate_rmsd_bond.bond_target_value 1.420 _pdbx_validate_rmsd_bond.bond_deviation -0.056 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.009 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C5'" _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 A _pdbx_validate_rmsd_angle.auth_seq_id_1 157 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C4'" _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 A _pdbx_validate_rmsd_angle.auth_seq_id_2 157 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "C3'" _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 A _pdbx_validate_rmsd_angle.auth_seq_id_3 157 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 106.51 _pdbx_validate_rmsd_angle.angle_target_value 115.20 _pdbx_validate_rmsd_angle.angle_deviation -8.69 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.40 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G B 136 ? ? 0.058 'SIDE CHAIN' 2 1 A B 149 ? ? 0.064 'SIDE CHAIN' 3 1 G B 154 ? ? 0.050 'SIDE CHAIN' 4 1 A B 160 ? ? 0.060 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? B MET 1 2 1 Y 1 A ALA 2 ? B ALA 2 3 1 Y 1 A CYS 3 ? B CYS 3 4 1 Y 1 A ALA 4 ? B ALA 4 5 1 Y 1 A THR 119 ? B THR 119 6 1 Y 1 A GLN 120 ? B GLN 120 7 1 Y 1 A LEU 121 ? B LEU 121 8 1 Y 1 A GLU 122 ? B GLU 122 9 1 Y 1 A HIS 123 ? B HIS 123 10 1 Y 1 A HIS 124 ? B HIS 124 11 1 Y 1 A HIS 125 ? B HIS 125 12 1 Y 1 A HIS 126 ? B HIS 126 13 1 Y 1 A HIS 127 ? B HIS 127 14 1 Y 1 A HIS 128 ? B HIS 128 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5BU P P N N 1 5BU OP1 O N N 2 5BU OP2 O N N 3 5BU OP3 O N N 4 5BU "O5'" O N N 5 5BU "C5'" C N N 6 5BU "C4'" C N R 7 5BU "O4'" O N N 8 5BU "C3'" C N S 9 5BU "O3'" O N N 10 5BU "C2'" C N R 11 5BU "O2'" O N N 12 5BU "C1'" C N R 13 5BU N1 N N N 14 5BU C2 C N N 15 5BU O2 O N N 16 5BU N3 N N N 17 5BU C4 C N N 18 5BU O4 O N N 19 5BU C5 C N N 20 5BU C6 C N N 21 5BU BR BR N N 22 5BU HOP2 H N N 23 5BU HOP3 H N N 24 5BU "H5'" H N N 25 5BU "H5''" H N N 26 5BU "H4'" H N N 27 5BU "H3'" H N N 28 5BU "HO3'" H N N 29 5BU "H2'" H N N 30 5BU "HO2'" H N N 31 5BU "H1'" H N N 32 5BU H3 H N N 33 5BU H6 H N N 34 A OP3 O N N 35 A P P N N 36 A OP1 O N N 37 A OP2 O N N 38 A "O5'" O N N 39 A "C5'" C N N 40 A "C4'" C N R 41 A "O4'" O N N 42 A "C3'" C N S 43 A "O3'" O N N 44 A "C2'" C N R 45 A "O2'" O N N 46 A "C1'" C N R 47 A N9 N Y N 48 A C8 C Y N 49 A N7 N Y N 50 A C5 C Y N 51 A C6 C Y N 52 A N6 N N N 53 A N1 N Y N 54 A C2 C Y N 55 A N3 N Y N 56 A C4 C Y N 57 A HOP3 H N N 58 A HOP2 H N N 59 A "H5'" H N N 60 A "H5''" H N N 61 A "H4'" H N N 62 A "H3'" H N N 63 A "HO3'" H N N 64 A "H2'" H N N 65 A "HO2'" H N N 66 A "H1'" H N N 67 A H8 H N N 68 A H61 H N N 69 A H62 H N N 70 A H2 H N N 71 A23 PC P N S 72 A23 O1C O N N 73 A23 O2C O N N 74 A23 P P N N 75 A23 OP1 O N N 76 A23 OP2 O N N 77 A23 OP3 O N N 78 A23 "O5'" O N N 79 A23 "C5'" C N N 80 A23 "C4'" C N R 81 A23 "O4'" O N N 82 A23 "C3'" C N R 83 A23 "O3'" O N N 84 A23 "C2'" C N R 85 A23 "O2'" O N N 86 A23 "C1'" C N R 87 A23 N9 N Y N 88 A23 C8 C Y N 89 A23 N7 N Y N 90 A23 C5 C Y N 91 A23 C6 C Y N 92 A23 N6 N N N 93 A23 N1 N Y N 94 A23 C2 C Y N 95 A23 N3 N Y N 96 A23 C4 C Y N 97 A23 HOC2 H N N 98 A23 HOP2 H N N 99 A23 HOP3 H N N 100 A23 "H5'" H N N 101 A23 "H5''" H N N 102 A23 "H4'" H N N 103 A23 "H3'" H N N 104 A23 "H2'" H N N 105 A23 "H1'" H N N 106 A23 H8 H N N 107 A23 HN61 H N N 108 A23 HN62 H N N 109 A23 H2 H N N 110 ALA N N N N 111 ALA CA C N S 112 ALA C C N N 113 ALA O O N N 114 ALA CB C N N 115 ALA OXT O N N 116 ALA H H N N 117 ALA H2 H N N 118 ALA HA H N N 119 ALA HB1 H N N 120 ALA HB2 H N N 121 ALA HB3 H N N 122 ALA HXT H N N 123 ARG N N N N 124 ARG CA C N S 125 ARG C C N N 126 ARG O O N N 127 ARG CB C N N 128 ARG CG C N N 129 ARG CD C N N 130 ARG NE N N N 131 ARG CZ C N N 132 ARG NH1 N N N 133 ARG NH2 N N N 134 ARG OXT O N N 135 ARG H H N N 136 ARG H2 H N N 137 ARG HA H N N 138 ARG HB2 H N N 139 ARG HB3 H N N 140 ARG HG2 H N N 141 ARG HG3 H N N 142 ARG HD2 H N N 143 ARG HD3 H N N 144 ARG HE H N N 145 ARG HH11 H N N 146 ARG HH12 H N N 147 ARG HH21 H N N 148 ARG HH22 H N N 149 ARG HXT H N N 150 ASN N N N N 151 ASN CA C N S 152 ASN C C N N 153 ASN O O N N 154 ASN CB C N N 155 ASN CG C N N 156 ASN OD1 O N N 157 ASN ND2 N N N 158 ASN OXT O N N 159 ASN H H N N 160 ASN H2 H N N 161 ASN HA H N N 162 ASN HB2 H N N 163 ASN HB3 H N N 164 ASN HD21 H N N 165 ASN HD22 H N N 166 ASN HXT H N N 167 ASP N N N N 168 ASP CA C N S 169 ASP C C N N 170 ASP O O N N 171 ASP CB C N N 172 ASP CG C N N 173 ASP OD1 O N N 174 ASP OD2 O N N 175 ASP OXT O N N 176 ASP H H N N 177 ASP H2 H N N 178 ASP HA H N N 179 ASP HB2 H N N 180 ASP HB3 H N N 181 ASP HD2 H N N 182 ASP HXT H N N 183 C OP3 O N N 184 C P P N N 185 C OP1 O N N 186 C OP2 O N N 187 C "O5'" O N N 188 C "C5'" C N N 189 C "C4'" C N R 190 C "O4'" O N N 191 C "C3'" C N S 192 C "O3'" O N N 193 C "C2'" C N R 194 C "O2'" O N N 195 C "C1'" C N R 196 C N1 N N N 197 C C2 C N N 198 C O2 O N N 199 C N3 N N N 200 C C4 C N N 201 C N4 N N N 202 C C5 C N N 203 C C6 C N N 204 C HOP3 H N N 205 C HOP2 H N N 206 C "H5'" H N N 207 C "H5''" H N N 208 C "H4'" H N N 209 C "H3'" H N N 210 C "HO3'" H N N 211 C "H2'" H N N 212 C "HO2'" H N N 213 C "H1'" H N N 214 C H41 H N N 215 C H42 H N N 216 C H5 H N N 217 C H6 H N N 218 CYS N N N N 219 CYS CA C N R 220 CYS C C N N 221 CYS O O N N 222 CYS CB C N N 223 CYS SG S N N 224 CYS OXT O N N 225 CYS H H N N 226 CYS H2 H N N 227 CYS HA H N N 228 CYS HB2 H N N 229 CYS HB3 H N N 230 CYS HG H N N 231 CYS HXT H N N 232 G OP3 O N N 233 G P P N N 234 G OP1 O N N 235 G OP2 O N N 236 G "O5'" O N N 237 G "C5'" C N N 238 G "C4'" C N R 239 G "O4'" O N N 240 G "C3'" C N S 241 G "O3'" O N N 242 G "C2'" C N R 243 G "O2'" O N N 244 G "C1'" C N R 245 G N9 N Y N 246 G C8 C Y N 247 G N7 N Y N 248 G C5 C Y N 249 G C6 C N N 250 G O6 O N N 251 G N1 N N N 252 G C2 C N N 253 G N2 N N N 254 G N3 N N N 255 G C4 C Y N 256 G HOP3 H N N 257 G HOP2 H N N 258 G "H5'" H N N 259 G "H5''" H N N 260 G "H4'" H N N 261 G "H3'" H N N 262 G "HO3'" H N N 263 G "H2'" H N N 264 G "HO2'" H N N 265 G "H1'" H N N 266 G H8 H N N 267 G H1 H N N 268 G H21 H N N 269 G H22 H N N 270 GLN N N N N 271 GLN CA C N S 272 GLN C C N N 273 GLN O O N N 274 GLN CB C N N 275 GLN CG C N N 276 GLN CD C N N 277 GLN OE1 O N N 278 GLN NE2 N N N 279 GLN OXT O N N 280 GLN H H N N 281 GLN H2 H N N 282 GLN HA H N N 283 GLN HB2 H N N 284 GLN HB3 H N N 285 GLN HG2 H N N 286 GLN HG3 H N N 287 GLN HE21 H N N 288 GLN HE22 H N N 289 GLN HXT H N N 290 GLU N N N N 291 GLU CA C N S 292 GLU C C N N 293 GLU O O N N 294 GLU CB C N N 295 GLU CG C N N 296 GLU CD C N N 297 GLU OE1 O N N 298 GLU OE2 O N N 299 GLU OXT O N N 300 GLU H H N N 301 GLU H2 H N N 302 GLU HA H N N 303 GLU HB2 H N N 304 GLU HB3 H N N 305 GLU HG2 H N N 306 GLU HG3 H N N 307 GLU HE2 H N N 308 GLU HXT H N N 309 GLY N N N N 310 GLY CA C N N 311 GLY C C N N 312 GLY O O N N 313 GLY OXT O N N 314 GLY H H N N 315 GLY H2 H N N 316 GLY HA2 H N N 317 GLY HA3 H N N 318 GLY HXT H N N 319 HIS N N N N 320 HIS CA C N S 321 HIS C C N N 322 HIS O O N N 323 HIS CB C N N 324 HIS CG C Y N 325 HIS ND1 N Y N 326 HIS CD2 C Y N 327 HIS CE1 C Y N 328 HIS NE2 N Y N 329 HIS OXT O N N 330 HIS H H N N 331 HIS H2 H N N 332 HIS HA H N N 333 HIS HB2 H N N 334 HIS HB3 H N N 335 HIS HD1 H N N 336 HIS HD2 H N N 337 HIS HE1 H N N 338 HIS HE2 H N N 339 HIS HXT H N N 340 HOH O O N N 341 HOH H1 H N N 342 HOH H2 H N N 343 ILE N N N N 344 ILE CA C N S 345 ILE C C N N 346 ILE O O N N 347 ILE CB C N S 348 ILE CG1 C N N 349 ILE CG2 C N N 350 ILE CD1 C N N 351 ILE OXT O N N 352 ILE H H N N 353 ILE H2 H N N 354 ILE HA H N N 355 ILE HB H N N 356 ILE HG12 H N N 357 ILE HG13 H N N 358 ILE HG21 H N N 359 ILE HG22 H N N 360 ILE HG23 H N N 361 ILE HD11 H N N 362 ILE HD12 H N N 363 ILE HD13 H N N 364 ILE HXT H N N 365 LEU N N N N 366 LEU CA C N S 367 LEU C C N N 368 LEU O O N N 369 LEU CB C N N 370 LEU CG C N N 371 LEU CD1 C N N 372 LEU CD2 C N N 373 LEU OXT O N N 374 LEU H H N N 375 LEU H2 H N N 376 LEU HA H N N 377 LEU HB2 H N N 378 LEU HB3 H N N 379 LEU HG H N N 380 LEU HD11 H N N 381 LEU HD12 H N N 382 LEU HD13 H N N 383 LEU HD21 H N N 384 LEU HD22 H N N 385 LEU HD23 H N N 386 LEU HXT H N N 387 LYS N N N N 388 LYS CA C N S 389 LYS C C N N 390 LYS O O N N 391 LYS CB C N N 392 LYS CG C N N 393 LYS CD C N N 394 LYS CE C N N 395 LYS NZ N N N 396 LYS OXT O N N 397 LYS H H N N 398 LYS H2 H N N 399 LYS HA H N N 400 LYS HB2 H N N 401 LYS HB3 H N N 402 LYS HG2 H N N 403 LYS HG3 H N N 404 LYS HD2 H N N 405 LYS HD3 H N N 406 LYS HE2 H N N 407 LYS HE3 H N N 408 LYS HZ1 H N N 409 LYS HZ2 H N N 410 LYS HZ3 H N N 411 LYS HXT H N N 412 MET N N N N 413 MET CA C N S 414 MET C C N N 415 MET O O N N 416 MET CB C N N 417 MET CG C N N 418 MET SD S N N 419 MET CE C N N 420 MET OXT O N N 421 MET H H N N 422 MET H2 H N N 423 MET HA H N N 424 MET HB2 H N N 425 MET HB3 H N N 426 MET HG2 H N N 427 MET HG3 H N N 428 MET HE1 H N N 429 MET HE2 H N N 430 MET HE3 H N N 431 MET HXT H N N 432 MG MG MG N N 433 PHE N N N N 434 PHE CA C N S 435 PHE C C N N 436 PHE O O N N 437 PHE CB C N N 438 PHE CG C Y N 439 PHE CD1 C Y N 440 PHE CD2 C Y N 441 PHE CE1 C Y N 442 PHE CE2 C Y N 443 PHE CZ C Y N 444 PHE OXT O N N 445 PHE H H N N 446 PHE H2 H N N 447 PHE HA H N N 448 PHE HB2 H N N 449 PHE HB3 H N N 450 PHE HD1 H N N 451 PHE HD2 H N N 452 PHE HE1 H N N 453 PHE HE2 H N N 454 PHE HZ H N N 455 PHE HXT H N N 456 PRO N N N N 457 PRO CA C N S 458 PRO C C N N 459 PRO O O N N 460 PRO CB C N N 461 PRO CG C N N 462 PRO CD C N N 463 PRO OXT O N N 464 PRO H H N N 465 PRO HA H N N 466 PRO HB2 H N N 467 PRO HB3 H N N 468 PRO HG2 H N N 469 PRO HG3 H N N 470 PRO HD2 H N N 471 PRO HD3 H N N 472 PRO HXT H N N 473 SER N N N N 474 SER CA C N S 475 SER C C N N 476 SER O O N N 477 SER CB C N N 478 SER OG O N N 479 SER OXT O N N 480 SER H H N N 481 SER H2 H N N 482 SER HA H N N 483 SER HB2 H N N 484 SER HB3 H N N 485 SER HG H N N 486 SER HXT H N N 487 THR N N N N 488 THR CA C N S 489 THR C C N N 490 THR O O N N 491 THR CB C N R 492 THR OG1 O N N 493 THR CG2 C N N 494 THR OXT O N N 495 THR H H N N 496 THR H2 H N N 497 THR HA H N N 498 THR HB H N N 499 THR HG1 H N N 500 THR HG21 H N N 501 THR HG22 H N N 502 THR HG23 H N N 503 THR HXT H N N 504 TRP N N N N 505 TRP CA C N S 506 TRP C C N N 507 TRP O O N N 508 TRP CB C N N 509 TRP CG C Y N 510 TRP CD1 C Y N 511 TRP CD2 C Y N 512 TRP NE1 N Y N 513 TRP CE2 C Y N 514 TRP CE3 C Y N 515 TRP CZ2 C Y N 516 TRP CZ3 C Y N 517 TRP CH2 C Y N 518 TRP OXT O N N 519 TRP H H N N 520 TRP H2 H N N 521 TRP HA H N N 522 TRP HB2 H N N 523 TRP HB3 H N N 524 TRP HD1 H N N 525 TRP HE1 H N N 526 TRP HE3 H N N 527 TRP HZ2 H N N 528 TRP HZ3 H N N 529 TRP HH2 H N N 530 TRP HXT H N N 531 TYR N N N N 532 TYR CA C N S 533 TYR C C N N 534 TYR O O N N 535 TYR CB C N N 536 TYR CG C Y N 537 TYR CD1 C Y N 538 TYR CD2 C Y N 539 TYR CE1 C Y N 540 TYR CE2 C Y N 541 TYR CZ C Y N 542 TYR OH O N N 543 TYR OXT O N N 544 TYR H H N N 545 TYR H2 H N N 546 TYR HA H N N 547 TYR HB2 H N N 548 TYR HB3 H N N 549 TYR HD1 H N N 550 TYR HD2 H N N 551 TYR HE1 H N N 552 TYR HE2 H N N 553 TYR HH H N N 554 TYR HXT H N N 555 U OP3 O N N 556 U P P N N 557 U OP1 O N N 558 U OP2 O N N 559 U "O5'" O N N 560 U "C5'" C N N 561 U "C4'" C N R 562 U "O4'" O N N 563 U "C3'" C N S 564 U "O3'" O N N 565 U "C2'" C N R 566 U "O2'" O N N 567 U "C1'" C N R 568 U N1 N N N 569 U C2 C N N 570 U O2 O N N 571 U N3 N N N 572 U C4 C N N 573 U O4 O N N 574 U C5 C N N 575 U C6 C N N 576 U HOP3 H N N 577 U HOP2 H N N 578 U "H5'" H N N 579 U "H5''" H N N 580 U "H4'" H N N 581 U "H3'" H N N 582 U "HO3'" H N N 583 U "H2'" H N N 584 U "HO2'" H N N 585 U "H1'" H N N 586 U H3 H N N 587 U H5 H N N 588 U H6 H N N 589 VAL N N N N 590 VAL CA C N S 591 VAL C C N N 592 VAL O O N N 593 VAL CB C N N 594 VAL CG1 C N N 595 VAL CG2 C N N 596 VAL OXT O N N 597 VAL H H N N 598 VAL H2 H N N 599 VAL HA H N N 600 VAL HB H N N 601 VAL HG11 H N N 602 VAL HG12 H N N 603 VAL HG13 H N N 604 VAL HG21 H N N 605 VAL HG22 H N N 606 VAL HG23 H N N 607 VAL HXT H N N 608 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5BU P OP1 doub N N 1 5BU P OP2 sing N N 2 5BU P OP3 sing N N 3 5BU P "O5'" sing N N 4 5BU OP2 HOP2 sing N N 5 5BU OP3 HOP3 sing N N 6 5BU "O5'" "C5'" sing N N 7 5BU "C5'" "C4'" sing N N 8 5BU "C5'" "H5'" sing N N 9 5BU "C5'" "H5''" sing N N 10 5BU "C4'" "O4'" sing N N 11 5BU "C4'" "C3'" sing N N 12 5BU "C4'" "H4'" sing N N 13 5BU "O4'" "C1'" sing N N 14 5BU "C3'" "O3'" sing N N 15 5BU "C3'" "C2'" sing N N 16 5BU "C3'" "H3'" sing N N 17 5BU "O3'" "HO3'" sing N N 18 5BU "C2'" "O2'" sing N N 19 5BU "C2'" "C1'" sing N N 20 5BU "C2'" "H2'" sing N N 21 5BU "O2'" "HO2'" sing N N 22 5BU "C1'" N1 sing N N 23 5BU "C1'" "H1'" sing N N 24 5BU N1 C2 sing N N 25 5BU N1 C6 sing N N 26 5BU C2 O2 doub N N 27 5BU C2 N3 sing N N 28 5BU N3 C4 sing N N 29 5BU N3 H3 sing N N 30 5BU C4 O4 doub N N 31 5BU C4 C5 sing N N 32 5BU C5 C6 doub N N 33 5BU C5 BR sing N N 34 5BU C6 H6 sing N N 35 A OP3 P sing N N 36 A OP3 HOP3 sing N N 37 A P OP1 doub N N 38 A P OP2 sing N N 39 A P "O5'" sing N N 40 A OP2 HOP2 sing N N 41 A "O5'" "C5'" sing N N 42 A "C5'" "C4'" sing N N 43 A "C5'" "H5'" sing N N 44 A "C5'" "H5''" sing N N 45 A "C4'" "O4'" sing N N 46 A "C4'" "C3'" sing N N 47 A "C4'" "H4'" sing N N 48 A "O4'" "C1'" sing N N 49 A "C3'" "O3'" sing N N 50 A "C3'" "C2'" sing N N 51 A "C3'" "H3'" sing N N 52 A "O3'" "HO3'" sing N N 53 A "C2'" "O2'" sing N N 54 A "C2'" "C1'" sing N N 55 A "C2'" "H2'" sing N N 56 A "O2'" "HO2'" sing N N 57 A "C1'" N9 sing N N 58 A "C1'" "H1'" sing N N 59 A N9 C8 sing Y N 60 A N9 C4 sing Y N 61 A C8 N7 doub Y N 62 A C8 H8 sing N N 63 A N7 C5 sing Y N 64 A C5 C6 sing Y N 65 A C5 C4 doub Y N 66 A C6 N6 sing N N 67 A C6 N1 doub Y N 68 A N6 H61 sing N N 69 A N6 H62 sing N N 70 A N1 C2 sing Y N 71 A C2 N3 doub Y N 72 A C2 H2 sing N N 73 A N3 C4 sing Y N 74 A23 PC O1C doub N N 75 A23 PC O2C sing N N 76 A23 PC "O3'" sing N N 77 A23 PC "O2'" sing N N 78 A23 O2C HOC2 sing N N 79 A23 P OP1 doub N N 80 A23 P OP2 sing N N 81 A23 P OP3 sing N N 82 A23 P "O5'" sing N N 83 A23 OP2 HOP2 sing N N 84 A23 OP3 HOP3 sing N N 85 A23 "O5'" "C5'" sing N N 86 A23 "C5'" "C4'" sing N N 87 A23 "C5'" "H5'" sing N N 88 A23 "C5'" "H5''" sing N N 89 A23 "C4'" "O4'" sing N N 90 A23 "C4'" "C3'" sing N N 91 A23 "C4'" "H4'" sing N N 92 A23 "O4'" "C1'" sing N N 93 A23 "C3'" "O3'" sing N N 94 A23 "C3'" "C2'" sing N N 95 A23 "C3'" "H3'" sing N N 96 A23 "C2'" "O2'" sing N N 97 A23 "C2'" "C1'" sing N N 98 A23 "C2'" "H2'" sing N N 99 A23 "C1'" N9 sing N N 100 A23 "C1'" "H1'" sing N N 101 A23 N9 C8 sing Y N 102 A23 N9 C4 sing Y N 103 A23 C8 N7 doub Y N 104 A23 C8 H8 sing N N 105 A23 N7 C5 sing Y N 106 A23 C5 C6 sing Y N 107 A23 C5 C4 doub Y N 108 A23 C6 N6 sing N N 109 A23 C6 N1 doub Y N 110 A23 N6 HN61 sing N N 111 A23 N6 HN62 sing N N 112 A23 N1 C2 sing Y N 113 A23 C2 N3 doub Y N 114 A23 C2 H2 sing N N 115 A23 N3 C4 sing Y N 116 ALA N CA sing N N 117 ALA N H sing N N 118 ALA N H2 sing N N 119 ALA CA C sing N N 120 ALA CA CB sing N N 121 ALA CA HA sing N N 122 ALA C O doub N N 123 ALA C OXT sing N N 124 ALA CB HB1 sing N N 125 ALA CB HB2 sing N N 126 ALA CB HB3 sing N N 127 ALA OXT HXT sing N N 128 ARG N CA sing N N 129 ARG N H sing N N 130 ARG N H2 sing N N 131 ARG CA C sing N N 132 ARG CA CB sing N N 133 ARG CA HA sing N N 134 ARG C O doub N N 135 ARG C OXT sing N N 136 ARG CB CG sing N N 137 ARG CB HB2 sing N N 138 ARG CB HB3 sing N N 139 ARG CG CD sing N N 140 ARG CG HG2 sing N N 141 ARG CG HG3 sing N N 142 ARG CD NE sing N N 143 ARG CD HD2 sing N N 144 ARG CD HD3 sing N N 145 ARG NE CZ sing N N 146 ARG NE HE sing N N 147 ARG CZ NH1 sing N N 148 ARG CZ NH2 doub N N 149 ARG NH1 HH11 sing N N 150 ARG NH1 HH12 sing N N 151 ARG NH2 HH21 sing N N 152 ARG NH2 HH22 sing N N 153 ARG OXT HXT sing N N 154 ASN N CA sing N N 155 ASN N H sing N N 156 ASN N H2 sing N N 157 ASN CA C sing N N 158 ASN CA CB sing N N 159 ASN CA HA sing N N 160 ASN C O doub N N 161 ASN C OXT sing N N 162 ASN CB CG sing N N 163 ASN CB HB2 sing N N 164 ASN CB HB3 sing N N 165 ASN CG OD1 doub N N 166 ASN CG ND2 sing N N 167 ASN ND2 HD21 sing N N 168 ASN ND2 HD22 sing N N 169 ASN OXT HXT sing N N 170 ASP N CA sing N N 171 ASP N H sing N N 172 ASP N H2 sing N N 173 ASP CA C sing N N 174 ASP CA CB sing N N 175 ASP CA HA sing N N 176 ASP C O doub N N 177 ASP C OXT sing N N 178 ASP CB CG sing N N 179 ASP CB HB2 sing N N 180 ASP CB HB3 sing N N 181 ASP CG OD1 doub N N 182 ASP CG OD2 sing N N 183 ASP OD2 HD2 sing N N 184 ASP OXT HXT sing N N 185 C OP3 P sing N N 186 C OP3 HOP3 sing N N 187 C P OP1 doub N N 188 C P OP2 sing N N 189 C P "O5'" sing N N 190 C OP2 HOP2 sing N N 191 C "O5'" "C5'" sing N N 192 C "C5'" "C4'" sing N N 193 C "C5'" "H5'" sing N N 194 C "C5'" "H5''" sing N N 195 C "C4'" "O4'" sing N N 196 C "C4'" "C3'" sing N N 197 C "C4'" "H4'" sing N N 198 C "O4'" "C1'" sing N N 199 C "C3'" "O3'" sing N N 200 C "C3'" "C2'" sing N N 201 C "C3'" "H3'" sing N N 202 C "O3'" "HO3'" sing N N 203 C "C2'" "O2'" sing N N 204 C "C2'" "C1'" sing N N 205 C "C2'" "H2'" sing N N 206 C "O2'" "HO2'" sing N N 207 C "C1'" N1 sing N N 208 C "C1'" "H1'" sing N N 209 C N1 C2 sing N N 210 C N1 C6 sing N N 211 C C2 O2 doub N N 212 C C2 N3 sing N N 213 C N3 C4 doub N N 214 C C4 N4 sing N N 215 C C4 C5 sing N N 216 C N4 H41 sing N N 217 C N4 H42 sing N N 218 C C5 C6 doub N N 219 C C5 H5 sing N N 220 C C6 H6 sing N N 221 CYS N CA sing N N 222 CYS N H sing N N 223 CYS N H2 sing N N 224 CYS CA C sing N N 225 CYS CA CB sing N N 226 CYS CA HA sing N N 227 CYS C O doub N N 228 CYS C OXT sing N N 229 CYS CB SG sing N N 230 CYS CB HB2 sing N N 231 CYS CB HB3 sing N N 232 CYS SG HG sing N N 233 CYS OXT HXT sing N N 234 G OP3 P sing N N 235 G OP3 HOP3 sing N N 236 G P OP1 doub N N 237 G P OP2 sing N N 238 G P "O5'" sing N N 239 G OP2 HOP2 sing N N 240 G "O5'" "C5'" sing N N 241 G "C5'" "C4'" sing N N 242 G "C5'" "H5'" sing N N 243 G "C5'" "H5''" sing N N 244 G "C4'" "O4'" sing N N 245 G "C4'" "C3'" sing N N 246 G "C4'" "H4'" sing N N 247 G "O4'" "C1'" sing N N 248 G "C3'" "O3'" sing N N 249 G "C3'" "C2'" sing N N 250 G "C3'" "H3'" sing N N 251 G "O3'" "HO3'" sing N N 252 G "C2'" "O2'" sing N N 253 G "C2'" "C1'" sing N N 254 G "C2'" "H2'" sing N N 255 G "O2'" "HO2'" sing N N 256 G "C1'" N9 sing N N 257 G "C1'" "H1'" sing N N 258 G N9 C8 sing Y N 259 G N9 C4 sing Y N 260 G C8 N7 doub Y N 261 G C8 H8 sing N N 262 G N7 C5 sing Y N 263 G C5 C6 sing N N 264 G C5 C4 doub Y N 265 G C6 O6 doub N N 266 G C6 N1 sing N N 267 G N1 C2 sing N N 268 G N1 H1 sing N N 269 G C2 N2 sing N N 270 G C2 N3 doub N N 271 G N2 H21 sing N N 272 G N2 H22 sing N N 273 G N3 C4 sing N N 274 GLN N CA sing N N 275 GLN N H sing N N 276 GLN N H2 sing N N 277 GLN CA C sing N N 278 GLN CA CB sing N N 279 GLN CA HA sing N N 280 GLN C O doub N N 281 GLN C OXT sing N N 282 GLN CB CG sing N N 283 GLN CB HB2 sing N N 284 GLN CB HB3 sing N N 285 GLN CG CD sing N N 286 GLN CG HG2 sing N N 287 GLN CG HG3 sing N N 288 GLN CD OE1 doub N N 289 GLN CD NE2 sing N N 290 GLN NE2 HE21 sing N N 291 GLN NE2 HE22 sing N N 292 GLN OXT HXT sing N N 293 GLU N CA sing N N 294 GLU N H sing N N 295 GLU N H2 sing N N 296 GLU CA C sing N N 297 GLU CA CB sing N N 298 GLU CA HA sing N N 299 GLU C O doub N N 300 GLU C OXT sing N N 301 GLU CB CG sing N N 302 GLU CB HB2 sing N N 303 GLU CB HB3 sing N N 304 GLU CG CD sing N N 305 GLU CG HG2 sing N N 306 GLU CG HG3 sing N N 307 GLU CD OE1 doub N N 308 GLU CD OE2 sing N N 309 GLU OE2 HE2 sing N N 310 GLU OXT HXT sing N N 311 GLY N CA sing N N 312 GLY N H sing N N 313 GLY N H2 sing N N 314 GLY CA C sing N N 315 GLY CA HA2 sing N N 316 GLY CA HA3 sing N N 317 GLY C O doub N N 318 GLY C OXT sing N N 319 GLY OXT HXT sing N N 320 HIS N CA sing N N 321 HIS N H sing N N 322 HIS N H2 sing N N 323 HIS CA C sing N N 324 HIS CA CB sing N N 325 HIS CA HA sing N N 326 HIS C O doub N N 327 HIS C OXT sing N N 328 HIS CB CG sing N N 329 HIS CB HB2 sing N N 330 HIS CB HB3 sing N N 331 HIS CG ND1 sing Y N 332 HIS CG CD2 doub Y N 333 HIS ND1 CE1 doub Y N 334 HIS ND1 HD1 sing N N 335 HIS CD2 NE2 sing Y N 336 HIS CD2 HD2 sing N N 337 HIS CE1 NE2 sing Y N 338 HIS CE1 HE1 sing N N 339 HIS NE2 HE2 sing N N 340 HIS OXT HXT sing N N 341 HOH O H1 sing N N 342 HOH O H2 sing N N 343 ILE N CA sing N N 344 ILE N H sing N N 345 ILE N H2 sing N N 346 ILE CA C sing N N 347 ILE CA CB sing N N 348 ILE CA HA sing N N 349 ILE C O doub N N 350 ILE C OXT sing N N 351 ILE CB CG1 sing N N 352 ILE CB CG2 sing N N 353 ILE CB HB sing N N 354 ILE CG1 CD1 sing N N 355 ILE CG1 HG12 sing N N 356 ILE CG1 HG13 sing N N 357 ILE CG2 HG21 sing N N 358 ILE CG2 HG22 sing N N 359 ILE CG2 HG23 sing N N 360 ILE CD1 HD11 sing N N 361 ILE CD1 HD12 sing N N 362 ILE CD1 HD13 sing N N 363 ILE OXT HXT sing N N 364 LEU N CA sing N N 365 LEU N H sing N N 366 LEU N H2 sing N N 367 LEU CA C sing N N 368 LEU CA CB sing N N 369 LEU CA HA sing N N 370 LEU C O doub N N 371 LEU C OXT sing N N 372 LEU CB CG sing N N 373 LEU CB HB2 sing N N 374 LEU CB HB3 sing N N 375 LEU CG CD1 sing N N 376 LEU CG CD2 sing N N 377 LEU CG HG sing N N 378 LEU CD1 HD11 sing N N 379 LEU CD1 HD12 sing N N 380 LEU CD1 HD13 sing N N 381 LEU CD2 HD21 sing N N 382 LEU CD2 HD22 sing N N 383 LEU CD2 HD23 sing N N 384 LEU OXT HXT sing N N 385 LYS N CA sing N N 386 LYS N H sing N N 387 LYS N H2 sing N N 388 LYS CA C sing N N 389 LYS CA CB sing N N 390 LYS CA HA sing N N 391 LYS C O doub N N 392 LYS C OXT sing N N 393 LYS CB CG sing N N 394 LYS CB HB2 sing N N 395 LYS CB HB3 sing N N 396 LYS CG CD sing N N 397 LYS CG HG2 sing N N 398 LYS CG HG3 sing N N 399 LYS CD CE sing N N 400 LYS CD HD2 sing N N 401 LYS CD HD3 sing N N 402 LYS CE NZ sing N N 403 LYS CE HE2 sing N N 404 LYS CE HE3 sing N N 405 LYS NZ HZ1 sing N N 406 LYS NZ HZ2 sing N N 407 LYS NZ HZ3 sing N N 408 LYS OXT HXT sing N N 409 MET N CA sing N N 410 MET N H sing N N 411 MET N H2 sing N N 412 MET CA C sing N N 413 MET CA CB sing N N 414 MET CA HA sing N N 415 MET C O doub N N 416 MET C OXT sing N N 417 MET CB CG sing N N 418 MET CB HB2 sing N N 419 MET CB HB3 sing N N 420 MET CG SD sing N N 421 MET CG HG2 sing N N 422 MET CG HG3 sing N N 423 MET SD CE sing N N 424 MET CE HE1 sing N N 425 MET CE HE2 sing N N 426 MET CE HE3 sing N N 427 MET OXT HXT sing N N 428 PHE N CA sing N N 429 PHE N H sing N N 430 PHE N H2 sing N N 431 PHE CA C sing N N 432 PHE CA CB sing N N 433 PHE CA HA sing N N 434 PHE C O doub N N 435 PHE C OXT sing N N 436 PHE CB CG sing N N 437 PHE CB HB2 sing N N 438 PHE CB HB3 sing N N 439 PHE CG CD1 doub Y N 440 PHE CG CD2 sing Y N 441 PHE CD1 CE1 sing Y N 442 PHE CD1 HD1 sing N N 443 PHE CD2 CE2 doub Y N 444 PHE CD2 HD2 sing N N 445 PHE CE1 CZ doub Y N 446 PHE CE1 HE1 sing N N 447 PHE CE2 CZ sing Y N 448 PHE CE2 HE2 sing N N 449 PHE CZ HZ sing N N 450 PHE OXT HXT sing N N 451 PRO N CA sing N N 452 PRO N CD sing N N 453 PRO N H sing N N 454 PRO CA C sing N N 455 PRO CA CB sing N N 456 PRO CA HA sing N N 457 PRO C O doub N N 458 PRO C OXT sing N N 459 PRO CB CG sing N N 460 PRO CB HB2 sing N N 461 PRO CB HB3 sing N N 462 PRO CG CD sing N N 463 PRO CG HG2 sing N N 464 PRO CG HG3 sing N N 465 PRO CD HD2 sing N N 466 PRO CD HD3 sing N N 467 PRO OXT HXT sing N N 468 SER N CA sing N N 469 SER N H sing N N 470 SER N H2 sing N N 471 SER CA C sing N N 472 SER CA CB sing N N 473 SER CA HA sing N N 474 SER C O doub N N 475 SER C OXT sing N N 476 SER CB OG sing N N 477 SER CB HB2 sing N N 478 SER CB HB3 sing N N 479 SER OG HG sing N N 480 SER OXT HXT sing N N 481 THR N CA sing N N 482 THR N H sing N N 483 THR N H2 sing N N 484 THR CA C sing N N 485 THR CA CB sing N N 486 THR CA HA sing N N 487 THR C O doub N N 488 THR C OXT sing N N 489 THR CB OG1 sing N N 490 THR CB CG2 sing N N 491 THR CB HB sing N N 492 THR OG1 HG1 sing N N 493 THR CG2 HG21 sing N N 494 THR CG2 HG22 sing N N 495 THR CG2 HG23 sing N N 496 THR OXT HXT sing N N 497 TRP N CA sing N N 498 TRP N H sing N N 499 TRP N H2 sing N N 500 TRP CA C sing N N 501 TRP CA CB sing N N 502 TRP CA HA sing N N 503 TRP C O doub N N 504 TRP C OXT sing N N 505 TRP CB CG sing N N 506 TRP CB HB2 sing N N 507 TRP CB HB3 sing N N 508 TRP CG CD1 doub Y N 509 TRP CG CD2 sing Y N 510 TRP CD1 NE1 sing Y N 511 TRP CD1 HD1 sing N N 512 TRP CD2 CE2 doub Y N 513 TRP CD2 CE3 sing Y N 514 TRP NE1 CE2 sing Y N 515 TRP NE1 HE1 sing N N 516 TRP CE2 CZ2 sing Y N 517 TRP CE3 CZ3 doub Y N 518 TRP CE3 HE3 sing N N 519 TRP CZ2 CH2 doub Y N 520 TRP CZ2 HZ2 sing N N 521 TRP CZ3 CH2 sing Y N 522 TRP CZ3 HZ3 sing N N 523 TRP CH2 HH2 sing N N 524 TRP OXT HXT sing N N 525 TYR N CA sing N N 526 TYR N H sing N N 527 TYR N H2 sing N N 528 TYR CA C sing N N 529 TYR CA CB sing N N 530 TYR CA HA sing N N 531 TYR C O doub N N 532 TYR C OXT sing N N 533 TYR CB CG sing N N 534 TYR CB HB2 sing N N 535 TYR CB HB3 sing N N 536 TYR CG CD1 doub Y N 537 TYR CG CD2 sing Y N 538 TYR CD1 CE1 sing Y N 539 TYR CD1 HD1 sing N N 540 TYR CD2 CE2 doub Y N 541 TYR CD2 HD2 sing N N 542 TYR CE1 CZ doub Y N 543 TYR CE1 HE1 sing N N 544 TYR CE2 CZ sing Y N 545 TYR CE2 HE2 sing N N 546 TYR CZ OH sing N N 547 TYR OH HH sing N N 548 TYR OXT HXT sing N N 549 U OP3 P sing N N 550 U OP3 HOP3 sing N N 551 U P OP1 doub N N 552 U P OP2 sing N N 553 U P "O5'" sing N N 554 U OP2 HOP2 sing N N 555 U "O5'" "C5'" sing N N 556 U "C5'" "C4'" sing N N 557 U "C5'" "H5'" sing N N 558 U "C5'" "H5''" sing N N 559 U "C4'" "O4'" sing N N 560 U "C4'" "C3'" sing N N 561 U "C4'" "H4'" sing N N 562 U "O4'" "C1'" sing N N 563 U "C3'" "O3'" sing N N 564 U "C3'" "C2'" sing N N 565 U "C3'" "H3'" sing N N 566 U "O3'" "HO3'" sing N N 567 U "C2'" "O2'" sing N N 568 U "C2'" "C1'" sing N N 569 U "C2'" "H2'" sing N N 570 U "O2'" "HO2'" sing N N 571 U "C1'" N1 sing N N 572 U "C1'" "H1'" sing N N 573 U N1 C2 sing N N 574 U N1 C6 sing N N 575 U C2 O2 doub N N 576 U C2 N3 sing N N 577 U N3 C4 sing N N 578 U N3 H3 sing N N 579 U C4 O4 doub N N 580 U C4 C5 sing N N 581 U C5 C6 doub N N 582 U C5 H5 sing N N 583 U C6 H6 sing N N 584 VAL N CA sing N N 585 VAL N H sing N N 586 VAL N H2 sing N N 587 VAL CA C sing N N 588 VAL CA CB sing N N 589 VAL CA HA sing N N 590 VAL C O doub N N 591 VAL C OXT sing N N 592 VAL CB CG1 sing N N 593 VAL CB CG2 sing N N 594 VAL CB HB sing N N 595 VAL CG1 HG11 sing N N 596 VAL CG1 HG12 sing N N 597 VAL CG1 HG13 sing N N 598 VAL CG2 HG21 sing N N 599 VAL CG2 HG22 sing N N 600 VAL CG2 HG23 sing N N 601 VAL OXT HXT sing N N 602 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1JID 'a-form double helix' 1JID 'hairpin loop' 1JID 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A U 28 1_555 -2.373 -0.484 -0.218 -10.924 -0.765 2.122 1 B_G135:U162_B B 135 ? B 162 ? 28 1 1 A G 2 1_555 A C 27 1_555 -0.427 -0.125 0.148 0.935 -5.759 2.196 2 B_G136:C161_B B 136 ? B 161 ? 19 1 1 A 5BU 3 1_555 A A 26 1_555 0.128 -0.160 0.050 4.598 -11.296 4.489 3 B_5BU137:A160_B B 137 ? B 160 ? 20 1 1 A G 4 1_555 A C 25 1_555 -0.283 -0.183 -0.108 -2.977 -12.714 -0.647 4 B_G138:C159_B B 138 ? B 159 ? 19 1 1 A A 5 1_555 A C 24 1_555 -2.678 -0.520 0.041 0.413 -11.956 3.664 5 B_A139:C158_B B 139 ? B 158 ? ? 1 1 A C 6 1_555 A A 23 1_555 2.446 -0.314 0.069 5.577 -12.993 9.128 6 B_C140:A157_B B 140 ? B 157 ? ? 1 1 A C 7 1_555 A G 22 1_555 0.577 -0.200 -0.161 4.477 -12.966 3.602 7 B_C141:G156_B B 141 ? B 156 ? 19 1 1 A 5BU 8 1_555 A G 21 1_555 2.030 -0.628 0.093 1.009 -10.162 -0.444 8 B_5BU142:G155_B B 142 ? B 155 ? 28 1 1 A C 9 1_555 A G 20 1_555 0.314 -0.166 0.017 11.628 -12.019 0.174 9 B_C143:G154_B B 143 ? B 154 ? 19 1 1 A C 10 1_555 A G 19 1_555 0.212 -0.156 -0.277 11.466 -7.109 1.256 10 B_C144:G153_B B 144 ? B 153 ? 19 1 1 A C 11 1_555 A G 18 1_555 0.268 -0.219 -0.299 8.750 -8.528 1.915 11 B_C145:G152_B B 145 ? B 152 ? 19 1 1 A G 12 1_555 A C 17 1_555 0.015 -0.200 -0.189 -5.838 -3.074 0.660 12 B_G146:C151_B B 146 ? B 151 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A U 28 1_555 A G 2 1_555 A C 27 1_555 -1.266 -1.786 3.003 -4.847 5.075 32.382 -3.908 1.482 2.852 8.969 8.566 33.114 1 BB_G135G136:C161U162_BB B 135 ? B 162 ? B 136 ? B 161 ? 1 A G 2 1_555 A C 27 1_555 A 5BU 3 1_555 A A 26 1_555 0.204 -0.868 3.162 0.834 4.974 33.765 -2.228 -0.222 3.011 8.504 -1.426 34.129 2 BB_G1365BU137:A160C161_BB B 136 ? B 161 ? B 137 ? B 160 ? 1 A 5BU 3 1_555 A A 26 1_555 A G 4 1_555 A C 25 1_555 -0.263 -1.493 3.365 0.564 11.361 29.392 -4.764 0.586 2.616 21.408 -1.062 31.471 3 BB_5BU137G138:C159A160_BB B 137 ? B 160 ? B 138 ? B 159 ? 1 A G 4 1_555 A C 25 1_555 A A 5 1_555 A C 24 1_555 -0.091 -1.851 2.995 -4.723 7.187 21.979 -6.530 -1.093 2.255 17.988 11.822 23.583 4 BB_G138A139:C158C159_BB B 138 ? B 159 ? B 139 ? B 158 ? 1 A A 5 1_555 A C 24 1_555 A C 6 1_555 A A 23 1_555 0.536 -0.611 3.216 0.934 5.752 54.479 -1.000 -0.529 3.149 6.263 -1.017 54.766 5 BB_A139C140:A157C158_BB B 139 ? B 158 ? B 140 ? B 157 ? 1 A C 6 1_555 A A 23 1_555 A C 7 1_555 A G 22 1_555 -0.418 -2.232 3.089 2.777 5.875 20.633 -7.923 2.048 2.297 15.902 -7.517 21.622 6 BB_C140C141:G156A157_BB B 140 ? B 157 ? B 141 ? B 156 ? 1 A C 7 1_555 A G 22 1_555 A 5BU 8 1_555 A G 21 1_555 -0.767 -1.705 3.317 -1.203 8.214 35.668 -3.803 1.062 2.890 13.190 1.932 36.591 7 BB_C1415BU142:G155G156_BB B 141 ? B 156 ? B 142 ? B 155 ? 1 A 5BU 8 1_555 A G 21 1_555 A C 9 1_555 A G 20 1_555 0.255 -2.116 2.787 2.110 6.956 24.476 -6.314 -0.116 2.128 15.963 -4.842 25.517 8 BB_5BU142C143:G154G155_BB B 142 ? B 155 ? B 143 ? B 154 ? 1 A C 9 1_555 A G 20 1_555 A C 10 1_555 A G 19 1_555 -0.745 -2.273 3.262 -1.399 5.031 24.319 -6.692 1.336 2.780 11.770 3.272 24.866 9 BB_C143C144:G153G154_BB B 143 ? B 154 ? B 144 ? B 153 ? 1 A C 10 1_555 A G 19 1_555 A C 11 1_555 A G 18 1_555 -0.275 -2.127 3.291 -1.643 8.533 30.455 -5.356 0.225 2.624 15.842 3.050 31.642 10 BB_C144C145:G152G153_BB B 144 ? B 153 ? B 145 ? B 152 ? 1 A C 11 1_555 A G 18 1_555 A G 12 1_555 A C 17 1_555 0.438 -2.365 3.677 -0.021 8.837 29.217 -6.293 -0.836 2.856 17.033 0.041 30.496 11 BB_C145G146:C151G152_BB B 145 ? B 152 ? B 146 ? B 151 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1D4R _pdbx_initial_refinement_model.details 'PDB ENTRY 1D4R' #