HEADER LIGASE 02-JUL-01 1JIL TITLE CRYSTAL STRUCTURE OF S. AUREUS TYRRS IN COMPLEX WITH SB284485 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TYROSINE--TRNA LIGASE; TYRRS; TYROSYL-TRANSFER RNA COMPND 5 SYNTHETASE; COMPND 6 EC: 6.1.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 VARIANT: AUREUS N315; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TYROSYL-TRNA SYNTHETASE, STAPHYLOCOCCUS AUREUS, TRUNCATION, STRUCTURE KEYWDS 2 BASED INHIBITOR DESIGN, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR X.QIU,C.A.JANSON,W.W.SMITH,R.L.JARVEST REVDAT 6 16-AUG-23 1JIL 1 REMARK REVDAT 5 16-NOV-11 1JIL 1 HETATM REVDAT 4 13-JUL-11 1JIL 1 VERSN REVDAT 3 24-FEB-09 1JIL 1 VERSN REVDAT 2 01-APR-03 1JIL 1 JRNL REVDAT 1 26-OCT-01 1JIL 0 JRNL AUTH X.QIU,C.A.JANSON,W.W.SMITH,S.M.GREEN,P.MCDEVITT,K.JOHANSON, JRNL AUTH 2 P.CARTER,M.HIBBS,C.LEWIS,A.CHALKER,A.FOSBERRY,J.LALONDE, JRNL AUTH 3 J.BERGE,P.BROWN,C.S.HOUGE-FRYDRYCH,R.L.JARVEST JRNL TITL CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS TYROSYL-TRNA JRNL TITL 2 SYNTHETASE IN COMPLEX WITH A CLASS OF POTENT AND SPECIFIC JRNL TITL 3 INHIBITORS. JRNL REF PROTEIN SCI. V. 10 2008 2001 JRNL REFN ISSN 0961-8368 JRNL PMID 11567092 JRNL DOI 10.1110/PS.18001 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 23342 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1150 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2573 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JIL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-01. REMARK 100 THE DEPOSITION ID IS D_1000013813. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23968 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.14900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1JIK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 1000, CACL2, PH 7.25, VAPOR REMARK 280 DIFFUSION, SITTING DROP AT 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.90000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.45000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.90000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.45000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.45000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 69.90000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.45000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 69.90000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER GENERATED FROM THE REMARK 300 MONOMER IN ASU AND THE OPERATION -X+1, 1/2-Y, Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 66.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 51.45000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 33.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 139.80000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 546 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 555 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 590 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 591 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 611 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 325 REMARK 465 GLY A 326 REMARK 465 ASP A 327 REMARK 465 LEU A 328 REMARK 465 LYS A 329 REMARK 465 SER A 330 REMARK 465 LEU A 331 REMARK 465 SER A 332 REMARK 465 ALA A 333 REMARK 465 LYS A 334 REMARK 465 GLU A 335 REMARK 465 LEU A 336 REMARK 465 LYS A 337 REMARK 465 ASP A 338 REMARK 465 GLY A 339 REMARK 465 PHE A 340 REMARK 465 LYS A 341 REMARK 465 ASP A 342 REMARK 465 VAL A 343 REMARK 465 PRO A 344 REMARK 465 GLN A 345 REMARK 465 VAL A 346 REMARK 465 THR A 347 REMARK 465 LEU A 348 REMARK 465 SER A 349 REMARK 465 ASN A 350 REMARK 465 ASP A 351 REMARK 465 THR A 352 REMARK 465 THR A 353 REMARK 465 ASN A 354 REMARK 465 ILE A 355 REMARK 465 VAL A 356 REMARK 465 GLU A 357 REMARK 465 VAL A 358 REMARK 465 LEU A 359 REMARK 465 ILE A 360 REMARK 465 GLU A 361 REMARK 465 THR A 362 REMARK 465 GLY A 363 REMARK 465 ILE A 364 REMARK 465 SER A 365 REMARK 465 PRO A 366 REMARK 465 SER A 367 REMARK 465 LYS A 368 REMARK 465 ARG A 369 REMARK 465 GLN A 370 REMARK 465 ALA A 371 REMARK 465 ARG A 372 REMARK 465 GLU A 373 REMARK 465 ASP A 374 REMARK 465 VAL A 375 REMARK 465 ASN A 376 REMARK 465 ASN A 377 REMARK 465 GLY A 378 REMARK 465 ALA A 379 REMARK 465 ILE A 380 REMARK 465 TYR A 381 REMARK 465 ILE A 382 REMARK 465 ASN A 383 REMARK 465 GLY A 384 REMARK 465 GLU A 385 REMARK 465 ARG A 386 REMARK 465 GLN A 387 REMARK 465 GLN A 388 REMARK 465 ASP A 389 REMARK 465 VAL A 390 REMARK 465 ASN A 391 REMARK 465 TYR A 392 REMARK 465 ALA A 393 REMARK 465 LEU A 394 REMARK 465 ALA A 395 REMARK 465 PRO A 396 REMARK 465 GLU A 397 REMARK 465 ASP A 398 REMARK 465 LYS A 399 REMARK 465 ILE A 400 REMARK 465 ASP A 401 REMARK 465 GLY A 402 REMARK 465 GLU A 403 REMARK 465 PHE A 404 REMARK 465 THR A 405 REMARK 465 ILE A 406 REMARK 465 ILE A 407 REMARK 465 ARG A 408 REMARK 465 ARG A 409 REMARK 465 GLY A 410 REMARK 465 LYS A 411 REMARK 465 LYS A 412 REMARK 465 LYS A 413 REMARK 465 TYR A 414 REMARK 465 PHE A 415 REMARK 465 MET A 416 REMARK 465 VAL A 417 REMARK 465 ASN A 418 REMARK 465 TYR A 419 REMARK 465 GLN A 420 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 GLU A 160 CG CD OE1 OE2 REMARK 470 GLU A 236 CG CD OE1 OE2 REMARK 470 GLU A 277 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 165 OH TYR A 165 7556 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 35 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 3 24.79 47.07 REMARK 500 TYR A 16 -80.51 -106.22 REMARK 500 SER A 237 -83.10 -75.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 485 A 421 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JII RELATED DB: PDB REMARK 900 SAME PROTEIN, DIFFERENT INHIBITOR REMARK 900 RELATED ID: 1JIJ RELATED DB: PDB REMARK 900 SAME PROTEIN, DIFFERENT INHIBITOR REMARK 900 RELATED ID: 1JIK RELATED DB: PDB REMARK 900 SAME PROTEIN, DIFFERENT INHIBITOR DBREF 1JIL A 1 420 GB 13701524 BAB42818 1 420 SEQRES 1 A 420 MET THR ASN VAL LEU ILE GLU ASP LEU LYS TRP ARG GLY SEQRES 2 A 420 LEU ILE TYR GLN GLN THR ASP GLU GLN GLY ILE GLU ASP SEQRES 3 A 420 LEU LEU ASN LYS GLU GLN VAL THR LEU TYR CYS GLY ALA SEQRES 4 A 420 ASP PRO THR ALA ASP SER LEU HIS ILE GLY HIS LEU LEU SEQRES 5 A 420 PRO PHE LEU THR LEU ARG ARG PHE GLN GLU HIS GLY HIS SEQRES 6 A 420 ARG PRO ILE VAL LEU ILE GLY GLY GLY THR GLY MET ILE SEQRES 7 A 420 GLY ASP PRO SER GLY LYS SER GLU GLU ARG VAL LEU GLN SEQRES 8 A 420 THR GLU GLU GLN VAL ASP LYS ASN ILE GLU GLY ILE SER SEQRES 9 A 420 LYS GLN MET HIS ASN ILE PHE GLU PHE GLY THR ASP HIS SEQRES 10 A 420 GLY ALA VAL LEU VAL ASN ASN ARG ASP TRP LEU GLY GLN SEQRES 11 A 420 ILE SER LEU ILE SER PHE LEU ARG ASP TYR GLY LYS HIS SEQRES 12 A 420 VAL GLY VAL ASN TYR MET LEU GLY LYS ASP SER ILE GLN SEQRES 13 A 420 SER ARG LEU GLU HIS GLY ILE SER TYR THR GLU PHE THR SEQRES 14 A 420 TYR THR ILE LEU GLN ALA ILE ASP PHE GLY HIS LEU ASN SEQRES 15 A 420 ARG GLU LEU ASN CYS LYS ILE GLN VAL GLY GLY SER ASP SEQRES 16 A 420 GLN TRP GLY ASN ILE THR SER GLY ILE GLU LEU MET ARG SEQRES 17 A 420 ARG MET TYR GLY GLN THR ASP ALA TYR GLY LEU THR ILE SEQRES 18 A 420 PRO LEU VAL THR LYS SER ASP GLY LYS LYS PHE GLY LYS SEQRES 19 A 420 SER GLU SER GLY ALA VAL TRP LEU ASP ALA GLU LYS THR SEQRES 20 A 420 SER PRO TYR GLU PHE TYR GLN PHE TRP ILE ASN GLN SER SEQRES 21 A 420 ASP GLU ASP VAL ILE LYS PHE LEU LYS TYR PHE THR PHE SEQRES 22 A 420 LEU GLY LYS GLU GLU ILE ASP ARG LEU GLU GLN SER LYS SEQRES 23 A 420 ASN GLU ALA PRO HIS LEU ARG GLU ALA GLN LYS THR LEU SEQRES 24 A 420 ALA GLU GLU VAL THR LYS PHE ILE HIS GLY GLU ASP ALA SEQRES 25 A 420 LEU ASN ASP ALA ILE ARG ILE SER GLN ALA LEU PHE SER SEQRES 26 A 420 GLY ASP LEU LYS SER LEU SER ALA LYS GLU LEU LYS ASP SEQRES 27 A 420 GLY PHE LYS ASP VAL PRO GLN VAL THR LEU SER ASN ASP SEQRES 28 A 420 THR THR ASN ILE VAL GLU VAL LEU ILE GLU THR GLY ILE SEQRES 29 A 420 SER PRO SER LYS ARG GLN ALA ARG GLU ASP VAL ASN ASN SEQRES 30 A 420 GLY ALA ILE TYR ILE ASN GLY GLU ARG GLN GLN ASP VAL SEQRES 31 A 420 ASN TYR ALA LEU ALA PRO GLU ASP LYS ILE ASP GLY GLU SEQRES 32 A 420 PHE THR ILE ILE ARG ARG GLY LYS LYS LYS TYR PHE MET SEQRES 33 A 420 VAL ASN TYR GLN HET 485 A 421 27 HETNAM 485 [2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (3,4,5- HETNAM 2 485 TRIHYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YL)- ACETIC HETNAM 3 485 ACID HETSYN 485 SB-284485 FORMUL 2 485 C17 H24 N2 O8 FORMUL 3 HOH *190(H2 O) HELIX 1 1 ASN A 3 ARG A 12 1 10 HELIX 2 2 ASP A 20 GLU A 31 1 12 HELIX 3 3 HIS A 47 HIS A 63 1 17 HELIX 4 4 GLY A 74 ILE A 78 5 5 HELIX 5 5 THR A 92 PHE A 111 1 20 HELIX 6 6 ASN A 124 GLY A 129 1 6 HELIX 7 7 SER A 132 TYR A 140 1 9 HELIX 8 8 GLY A 141 VAL A 144 5 4 HELIX 9 9 GLY A 145 GLY A 151 1 7 HELIX 10 10 LYS A 152 SER A 154 5 3 HELIX 11 11 ILE A 155 GLU A 160 1 6 HELIX 12 12 SER A 164 ASN A 186 1 23 HELIX 13 13 GLN A 196 GLY A 212 1 17 HELIX 14 14 SER A 248 ASN A 258 1 11 HELIX 15 15 SER A 260 THR A 272 1 13 HELIX 16 16 GLY A 275 ALA A 289 1 15 HELIX 17 17 PRO A 290 LEU A 292 5 3 HELIX 18 18 ARG A 293 GLY A 309 1 17 HELIX 19 19 GLY A 309 PHE A 324 1 16 SHEET 1 A 5 VAL A 120 ASN A 123 0 SHEET 2 A 5 ARG A 66 ILE A 71 1 O PRO A 67 N VAL A 120 SHEET 3 A 5 THR A 34 ALA A 39 1 O LEU A 35 N ILE A 68 SHEET 4 A 5 CYS A 187 GLY A 193 1 N LYS A 188 O THR A 34 SHEET 5 A 5 TYR A 217 ILE A 221 1 N TYR A 217 O LYS A 188 SITE 1 AC1 17 TYR A 36 GLY A 38 ALA A 39 ASP A 40 SITE 2 AC1 17 HIS A 50 PHE A 54 LEU A 70 ASP A 80 SITE 3 AC1 17 TYR A 170 GLN A 174 ASP A 177 GLN A 190 SITE 4 AC1 17 GLY A 192 GLY A 193 ASP A 195 GLN A 196 SITE 5 AC1 17 HOH A 424 CRYST1 66.000 102.900 139.800 90.00 90.00 90.00 I 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015152 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009718 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007153 0.00000