data_1JJ6 # _entry.id 1JJ6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1JJ6 pdb_00001jj6 10.2210/pdb1jj6/pdb NDB PD0228 ? ? RCSB RCSB013833 ? ? WWPDB D_1000013833 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-02-22 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_site 6 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1JJ6 _pdbx_database_status.recvd_initial_deposition_date 2001-07-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1HCR ;Native Wild-Type HIN Recombinase DNA-Binding Domain Bound to Underivatized HIXL Half-Site ; unspecified PDB 1IJW 'FORM1 BR18 DERIVATIVE' unspecified PDB 1JJ8 'FORM2 I4 DERIVATIVE' unspecified PDB 1JKO 'FORM1 A10G MUTANT' unspecified PDB 1JKP 'FORM1 T11G MUTANT' unspecified PDB 1JKQ 'FORM1 G9T MUTANT' unspecified PDB 1JKR 'FORM1 T11C MUTANT' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chiu, T.K.' 1 'Sohn, C.' 2 'Johnson, R.C.' 3 'Dickerson, R.E.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Testing water-mediated DNA recognition by the Hin recombinase.' 'EMBO J.' 21 801 814 2002 EMJODG UK 0261-4189 0897 ? 11847127 10.1093/emboj/21.4.801 1 'How Hin Recombinase, FIS and Cations Bind DNA. Chapter 4. Water-Mediated Sequence-Specific Recognition by Hin Recombinase' Thesis ? 145 241 2001 ? ? ? ? ? ? ? 2 'Hin Recombinase Bound to DNA: The Origin of Specificity in Major and Minor Groove Interactions' Science 263 348 355 1994 SCIEAS US 0036-8075 0038 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chiu, T.K.' 1 ? primary 'Sohn, C.' 2 ? primary 'Dickerson, R.E.' 3 ? primary 'Johnson, R.C.' 4 ? 1 'Chiu, T.K.' 5 ? 2 'Feng, J.A.' 6 ? 2 'Johnson, R.C.' 7 ? 2 'Dickerson, R.E.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*TP*GP*TP*(5IT)P*TP*TP*TP*GP*AP*TP*AP*AP*GP*A)-3'" 4436.707 1 ? ? ? ? 2 polymer syn "5'-D(*AP*TP*CP*TP*TP*AP*TP*CP*AP*AP*AP*AP*AP*C)-3'" 4231.806 1 ? ? ? ? 3 polymer syn 'DNA-INVERTASE HIN' 6047.051 1 ? ? 'RESIDUES 139 TO 190' ? 4 non-polymer syn 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 122.143 1 ? ? ? ? 5 water nat water 18.015 10 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'Hin Recombinase' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DT)(DG)(DT)(5IU)(DT)(DT)(DT)(DG)(DA)(DT)(DA)(DA)(DG)(DA)' TGTUTTTGATAAGA A ? 2 polydeoxyribonucleotide no no '(DA)(DT)(DC)(DT)(DT)(DA)(DT)(DC)(DA)(DA)(DA)(DA)(DA)(DC)' ATCTTATCAAAAAC B ? 3 'polypeptide(L)' no no GRPRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASSIKKRMN GRPRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASSIKKRMN C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRS 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DT n 1 4 5IU n 1 5 DT n 1 6 DT n 1 7 DT n 1 8 DG n 1 9 DA n 1 10 DT n 1 11 DA n 1 12 DA n 1 13 DG n 1 14 DA n 2 1 DA n 2 2 DT n 2 3 DC n 2 4 DT n 2 5 DT n 2 6 DA n 2 7 DT n 2 8 DC n 2 9 DA n 2 10 DA n 2 11 DA n 2 12 DA n 2 13 DA n 2 14 DC n 3 1 GLY n 3 2 ARG n 3 3 PRO n 3 4 ARG n 3 5 ALA n 3 6 ILE n 3 7 ASN n 3 8 LYS n 3 9 HIS n 3 10 GLU n 3 11 GLN n 3 12 GLU n 3 13 GLN n 3 14 ILE n 3 15 SER n 3 16 ARG n 3 17 LEU n 3 18 LEU n 3 19 GLU n 3 20 LYS n 3 21 GLY n 3 22 HIS n 3 23 PRO n 3 24 ARG n 3 25 GLN n 3 26 GLN n 3 27 LEU n 3 28 ALA n 3 29 ILE n 3 30 ILE n 3 31 PHE n 3 32 GLY n 3 33 ILE n 3 34 GLY n 3 35 VAL n 3 36 SER n 3 37 THR n 3 38 LEU n 3 39 TYR n 3 40 ARG n 3 41 TYR n 3 42 PHE n 3 43 PRO n 3 44 ALA n 3 45 SER n 3 46 SER n 3 47 ILE n 3 48 LYS n 3 49 LYS n 3 50 ARG n 3 51 MET n 3 52 ASN n # _pdbx_entity_src_syn.entity_id 3 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'SYNTHETIC PEPTIDE' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5IU 'DNA linking' n "5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 I N2 O8 P' 434.078 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRS non-polymer . 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 'TRIS BUFFER' 'C4 H12 N O3 1' 122.143 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 2 2 DT T A . n A 1 2 DG 2 3 3 DG G A . n A 1 3 DT 3 4 4 DT T A . n A 1 4 5IU 4 5 5 5IU U A . n A 1 5 DT 5 6 6 DT T A . n A 1 6 DT 6 7 7 DT T A . n A 1 7 DT 7 8 8 DT T A . n A 1 8 DG 8 9 9 DG G A . n A 1 9 DA 9 10 10 DA A A . n A 1 10 DT 10 11 11 DT T A . n A 1 11 DA 11 12 12 DA A A . n A 1 12 DA 12 13 13 DA A A . n A 1 13 DG 13 14 14 DG G A . n A 1 14 DA 14 15 15 DA A A . n B 2 1 DA 1 16 16 DA A B . n B 2 2 DT 2 17 17 DT T B . n B 2 3 DC 3 18 18 DC C B . n B 2 4 DT 4 19 19 DT T B . n B 2 5 DT 5 20 20 DT T B . n B 2 6 DA 6 21 21 DA A B . n B 2 7 DT 7 22 22 DT T B . n B 2 8 DC 8 23 23 DC C B . n B 2 9 DA 9 24 24 DA A B . n B 2 10 DA 10 25 25 DA A B . n B 2 11 DA 11 26 26 DA A B . n B 2 12 DA 12 27 27 DA A B . n B 2 13 DA 13 28 28 DA A B . n B 2 14 DC 14 29 29 DC C B . n C 3 1 GLY 1 139 139 GLY GLY C . n C 3 2 ARG 2 140 140 ARG ARG C . n C 3 3 PRO 3 141 141 PRO PRO C . n C 3 4 ARG 4 142 142 ARG ARG C . n C 3 5 ALA 5 143 143 ALA ALA C . n C 3 6 ILE 6 144 144 ILE ILE C . n C 3 7 ASN 7 145 145 ASN ASN C . n C 3 8 LYS 8 146 146 LYS LYS C . n C 3 9 HIS 9 147 147 HIS HIS C . n C 3 10 GLU 10 148 148 GLU GLU C . n C 3 11 GLN 11 149 149 GLN GLN C . n C 3 12 GLU 12 150 150 GLU GLU C . n C 3 13 GLN 13 151 151 GLN GLN C . n C 3 14 ILE 14 152 152 ILE ILE C . n C 3 15 SER 15 153 153 SER SER C . n C 3 16 ARG 16 154 154 ARG ARG C . n C 3 17 LEU 17 155 155 LEU LEU C . n C 3 18 LEU 18 156 156 LEU LEU C . n C 3 19 GLU 19 157 157 GLU GLU C . n C 3 20 LYS 20 158 158 LYS LYS C . n C 3 21 GLY 21 159 159 GLY GLY C . n C 3 22 HIS 22 160 160 HIS HIS C . n C 3 23 PRO 23 161 161 PRO PRO C . n C 3 24 ARG 24 162 162 ARG ARG C . n C 3 25 GLN 25 163 163 GLN GLN C . n C 3 26 GLN 26 164 164 GLN GLN C . n C 3 27 LEU 27 165 165 LEU LEU C . n C 3 28 ALA 28 166 166 ALA ALA C . n C 3 29 ILE 29 167 167 ILE ILE C . n C 3 30 ILE 30 168 168 ILE ILE C . n C 3 31 PHE 31 169 169 PHE PHE C . n C 3 32 GLY 32 170 170 GLY GLY C . n C 3 33 ILE 33 171 171 ILE ILE C . n C 3 34 GLY 34 172 172 GLY GLY C . n C 3 35 VAL 35 173 173 VAL VAL C . n C 3 36 SER 36 174 174 SER SER C . n C 3 37 THR 37 175 175 THR THR C . n C 3 38 LEU 38 176 176 LEU LEU C . n C 3 39 TYR 39 177 177 TYR TYR C . n C 3 40 ARG 40 178 178 ARG ARG C . n C 3 41 TYR 41 179 179 TYR TYR C . n C 3 42 PHE 42 180 180 PHE PHE C . n C 3 43 PRO 43 181 181 PRO PRO C . n C 3 44 ALA 44 182 182 ALA ALA C . n C 3 45 SER 45 183 183 SER SER C . n C 3 46 SER 46 184 184 SER SER C . n C 3 47 ILE 47 185 185 ILE ILE C . n C 3 48 LYS 48 186 ? ? ? C . n C 3 49 LYS 49 187 ? ? ? C . n C 3 50 ARG 50 188 ? ? ? C . n C 3 51 MET 51 189 ? ? ? C . n C 3 52 ASN 52 190 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 TRS 1 203 203 TRS TRS C . E 5 HOH 1 206 206 HOH HOH A . E 5 HOH 2 210 210 HOH HOH A . E 5 HOH 3 212 212 HOH HOH A . F 5 HOH 1 201 201 HOH HOH B . F 5 HOH 2 202 202 HOH HOH B . F 5 HOH 3 204 204 HOH HOH B . G 5 HOH 1 205 205 HOH HOH C . G 5 HOH 2 207 207 HOH HOH C . G 5 HOH 3 208 208 HOH HOH C . G 5 HOH 4 211 211 HOH HOH C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C LYS 146 ? CD ? C LYS 8 CD 2 1 Y 1 C LYS 146 ? CE ? C LYS 8 CE 3 1 Y 1 C LYS 146 ? NZ ? C LYS 8 NZ 4 1 Y 1 C HIS 147 ? CG ? C HIS 9 CG 5 1 Y 1 C HIS 147 ? ND1 ? C HIS 9 ND1 6 1 Y 1 C HIS 147 ? CD2 ? C HIS 9 CD2 7 1 Y 1 C HIS 147 ? CE1 ? C HIS 9 CE1 8 1 Y 1 C HIS 147 ? NE2 ? C HIS 9 NE2 9 1 Y 1 C GLU 157 ? CG ? C GLU 19 CG 10 1 Y 1 C GLU 157 ? CD ? C GLU 19 CD 11 1 Y 1 C GLU 157 ? OE1 ? C GLU 19 OE1 12 1 Y 1 C GLU 157 ? OE2 ? C GLU 19 OE2 13 1 Y 1 C LYS 158 ? CG ? C LYS 20 CG 14 1 Y 1 C LYS 158 ? CD ? C LYS 20 CD 15 1 Y 1 C LYS 158 ? CE ? C LYS 20 CE 16 1 Y 1 C LYS 158 ? NZ ? C LYS 20 NZ 17 1 Y 1 C GLN 164 ? CG ? C GLN 26 CG 18 1 Y 1 C GLN 164 ? CD ? C GLN 26 CD 19 1 Y 1 C GLN 164 ? OE1 ? C GLN 26 OE1 20 1 Y 1 C GLN 164 ? NE2 ? C GLN 26 NE2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SOLVE phasing . ? 1 CNS refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _cell.entry_id 1JJ6 _cell.length_a 86.796 _cell.length_b 82.120 _cell.length_c 45.234 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JJ6 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # _exptl.entry_id 1JJ6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.68 _exptl_crystal.density_percent_sol 52.3 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 280 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details ;Hanging drop vapor diffusion at 4C, with initial concentration in drop of 0.13 mM DNA, 0.33 mM Hin, 46 mM Tris (pH 8.5), 46 mM CaCl2, 63 mM NaCl, 11.6% v/v PEG400, and 2.03 mM Na cacodylate. Reservoir solution contains 100 mM Tris (pH 8.5), 100 mM CaCl2, 100 mM NaCl, and 25% PEG400. Concentration of PEG400 in reservoir solution was increased in 5% increments to 35%., VAPOR DIFFUSION, HANGING DROP, temperature 280K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 DNA ? ? ? 1 2 1 HIN ? ? ? 1 3 1 Tris ? ? ? 1 4 1 CaCl2 ? ? ? 1 5 1 NaCl ? ? ? 1 6 1 'PEG 400' ? ? ? 1 7 1 'sodium cacodylate' ? ? ? 1 8 2 Tris ? ? ? 1 9 2 CaCl2 ? ? ? 1 10 2 NaCl ? ? ? 1 11 2 'PEG 400' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 _diffrn.details ;MULTIPLE WAVELENGTH WITH ANOMALOUS SCATTERING USING THREE IODINE AND ONE BROMINE DERIVATIVES. THE IODINE DERIVATIVES REPLACE THYMINE AT POSITIONS 4, 5, AND 7+19 WITH 5-IODO URACIL. THE BROMINE DERIVATIVE REPLACES CYTOSINE AT POSITION 18 WITH 5-BROMO CYTOSINE. ; # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 1999-06-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.980 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12C _diffrn_source.pdbx_wavelength 0.980 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1JJ6 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 2.30 _reflns.number_obs 6695 _reflns.number_all ? _reflns.percent_possible_obs 89.55 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.067 _reflns.pdbx_netI_over_sigmaI 21.07 _reflns.B_iso_Wilson_estimate 54 _reflns.pdbx_redundancy 43 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.40 _reflns_shell.percent_possible_all 55.33 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.192 _reflns_shell.meanI_over_sigI_obs 6.34 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1JJ6 _refine.ls_number_reflns_obs 6695 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 89.55 _refine.ls_R_factor_obs 0.238 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.238 _refine.ls_R_factor_R_free 0.2807 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.1 _refine.ls_number_reflns_R_free 681 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 52 _refine.aniso_B[1][1] 18.32 _refine.aniso_B[2][2] 12.82 _refine.aniso_B[3][3] -31.13 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details ? _refine.solvent_model_param_ksol 0.35 _refine.solvent_model_param_bsol 100 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'MIRAS PHASES' _refine.pdbx_method_to_determine_struct MIRAS _refine.pdbx_isotropic_thermal_model ANISOTROPIC_FIXED_ISOTROPIC _refine.pdbx_stereochemistry_target_values MLF _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1JJ6 _refine_analyze.Luzzati_coordinate_error_obs 0.41 _refine_analyze.Luzzati_sigma_a_obs 0.59 _refine_analyze.Luzzati_d_res_low_obs 5.0 _refine_analyze.Luzzati_coordinate_error_free 0.50 _refine_analyze.Luzzati_sigma_a_free 0.54 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 360 _refine_hist.pdbx_number_atoms_nucleic_acid 575 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 10 _refine_hist.number_atoms_total 954 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.887 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 18.16 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.976 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 2.0 1.5 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 4.9 3.0 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 3.0 2.0 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 7.6 4.0 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.30 _refine_ls_shell.d_res_low 2.40 _refine_ls_shell.number_reflns_R_work 504 _refine_ls_shell.R_factor_R_work 0.356 _refine_ls_shell.percent_reflns_obs 55.33 _refine_ls_shell.R_factor_R_free 0.38 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 6.7 _refine_ls_shell.number_reflns_R_free 61 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 DNA-RNA_REP.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1JJ6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1JJ6 _struct.title 'Testing the Water-Mediated Hin Recombinase DNA Recognition by Systematic Mutations.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1JJ6 _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text 'WATER-MEDIATED RECOGNITION, PROTEIN-DNA COMPLEX, HIN RECOMBINASE, I5, DNA BINDING PROTEIN-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP HIN_SALTY P03013 3 139 ? ? 2 PDB 1JJ6 1JJ6 1 ? ? ? 3 PDB 1JJ6 1JJ6 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1JJ6 C 1 ? 52 ? P03013 139 ? 190 ? 139 190 2 2 1JJ6 A 1 ? 14 ? 1JJ6 2 ? 15 ? 2 15 3 3 1JJ6 B 1 ? 14 ? 1JJ6 16 ? 29 ? 16 29 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN C 7 ? LYS C 20 ? ASN C 145 LYS C 158 1 ? 14 HELX_P HELX_P2 2 PRO C 23 ? GLY C 32 ? PRO C 161 GLY C 170 1 ? 10 HELX_P HELX_P3 3 GLY C 34 ? PHE C 42 ? GLY C 172 PHE C 180 1 ? 9 HELX_P HELX_P4 4 PRO C 43 ? ILE C 47 ? PRO C 181 ILE C 185 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DT 3 "O3'" ? ? ? 1_555 A 5IU 4 P ? ? A DT 4 A 5IU 5 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale2 covale both ? A 5IU 4 "O3'" ? ? ? 1_555 A DT 5 P ? ? A 5IU 5 A DT 6 1_555 ? ? ? ? ? ? ? 1.599 ? ? hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 14 N3 ? ? A DG 3 B DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 14 O2 ? ? A DG 3 B DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 14 N4 ? ? A DG 3 B DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 13 N1 ? ? A DT 4 B DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 13 N6 ? ? A DT 4 B DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A 5IU 4 N3 ? ? ? 1_555 B DA 12 N1 ? ? A 5IU 5 B DA 27 1_555 ? ? ? ? ? ? '5IU-DA PAIR' ? ? ? hydrog7 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 11 N1 ? ? A DT 6 B DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 11 N6 ? ? A DT 6 B DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 7 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 10 N6 ? ? A DT 7 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 8 B DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 8 B DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 9 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 9 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 9 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 10 B DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 10 B DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 11 B DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 11 B DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 12 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 12 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 13 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 13 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 13 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 14 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 13 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 14 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 13 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 14 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id C _struct_site.pdbx_auth_comp_id TRS _struct_site.pdbx_auth_seq_id 203 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE TRS C 203' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 DG A 8 ? DG A 9 . ? 1_555 ? 2 AC1 3 DC B 8 ? DC B 23 . ? 6_554 ? 3 AC1 3 GLY C 32 ? GLY C 170 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A DT 6 ? ? "O5'" A DT 6 ? ? 1.705 1.593 0.112 0.010 N 2 1 "C3'" B DA 16 ? B "C2'" B DA 16 ? ? 1.416 1.516 -0.100 0.008 N 3 1 "C4'" B DT 17 ? A "C3'" B DT 17 ? ? 1.416 1.521 -0.105 0.010 N 4 1 "C4'" B DT 17 ? B "C3'" B DT 17 ? ? 1.424 1.521 -0.097 0.010 N 5 1 "O4'" B DT 17 ? ? "C4'" B DT 17 ? A 1.525 1.449 0.076 0.009 N 6 1 "O4'" B DT 17 ? ? "C4'" B DT 17 ? B 1.523 1.449 0.074 0.009 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A 5IU 5 ? ? "O3'" A 5IU 5 ? ? P A DT 6 ? ? 134.04 119.70 14.34 1.20 Y 2 1 "O3'" A 5IU 5 ? ? P A DT 6 ? ? "O5'" A DT 6 ? ? 89.27 104.00 -14.73 1.90 Y 3 1 "O3'" A 5IU 5 ? ? P A DT 6 ? ? OP1 A DT 6 ? ? 130.38 110.50 19.88 1.10 Y 4 1 P A DT 6 ? ? "O5'" A DT 6 ? ? "C5'" A DT 6 ? ? 110.55 120.90 -10.35 1.60 N 5 1 "C5'" B DA 16 ? ? "C4'" B DA 16 ? ? "C3'" B DA 16 ? A 130.74 115.70 15.04 1.20 N 6 1 "C4'" B DA 16 ? ? "C3'" B DA 16 ? B "C2'" B DA 16 ? ? 112.20 103.10 9.10 0.90 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DA A 15 ? ? 0.063 'SIDE CHAIN' 2 1 DA B 28 ? ? 0.094 'SIDE CHAIN' # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id 5IU _pdbx_struct_mod_residue.label_seq_id 4 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id 5IU _pdbx_struct_mod_residue.auth_seq_id 5 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DU _pdbx_struct_mod_residue.details "5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C LYS 186 ? C LYS 48 2 1 Y 1 C LYS 187 ? C LYS 49 3 1 Y 1 C ARG 188 ? C ARG 50 4 1 Y 1 C MET 189 ? C MET 51 5 1 Y 1 C ASN 190 ? C ASN 52 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5IU N1 N N N 1 5IU C2 C N N 2 5IU N3 N N N 3 5IU C4 C N N 4 5IU C5 C N N 5 5IU C6 C N N 6 5IU O2 O N N 7 5IU O4 O N N 8 5IU I5 I N N 9 5IU "C1'" C N R 10 5IU "C2'" C N N 11 5IU "C3'" C N S 12 5IU "C4'" C N R 13 5IU "O3'" O N N 14 5IU "O4'" O N N 15 5IU "C5'" C N N 16 5IU "O5'" O N N 17 5IU P P N N 18 5IU OP1 O N N 19 5IU OP2 O N N 20 5IU OP3 O N N 21 5IU HN3 H N N 22 5IU H6 H N N 23 5IU "H1'" H N N 24 5IU "H2'" H N N 25 5IU "H2''" H N N 26 5IU "H3'" H N N 27 5IU "H4'" H N N 28 5IU "HO3'" H N N 29 5IU "H5'" H N N 30 5IU "H5''" H N N 31 5IU HOP2 H N N 32 5IU HOP3 H N N 33 ALA N N N N 34 ALA CA C N S 35 ALA C C N N 36 ALA O O N N 37 ALA CB C N N 38 ALA OXT O N N 39 ALA H H N N 40 ALA H2 H N N 41 ALA HA H N N 42 ALA HB1 H N N 43 ALA HB2 H N N 44 ALA HB3 H N N 45 ALA HXT H N N 46 ARG N N N N 47 ARG CA C N S 48 ARG C C N N 49 ARG O O N N 50 ARG CB C N N 51 ARG CG C N N 52 ARG CD C N N 53 ARG NE N N N 54 ARG CZ C N N 55 ARG NH1 N N N 56 ARG NH2 N N N 57 ARG OXT O N N 58 ARG H H N N 59 ARG H2 H N N 60 ARG HA H N N 61 ARG HB2 H N N 62 ARG HB3 H N N 63 ARG HG2 H N N 64 ARG HG3 H N N 65 ARG HD2 H N N 66 ARG HD3 H N N 67 ARG HE H N N 68 ARG HH11 H N N 69 ARG HH12 H N N 70 ARG HH21 H N N 71 ARG HH22 H N N 72 ARG HXT H N N 73 ASN N N N N 74 ASN CA C N S 75 ASN C C N N 76 ASN O O N N 77 ASN CB C N N 78 ASN CG C N N 79 ASN OD1 O N N 80 ASN ND2 N N N 81 ASN OXT O N N 82 ASN H H N N 83 ASN H2 H N N 84 ASN HA H N N 85 ASN HB2 H N N 86 ASN HB3 H N N 87 ASN HD21 H N N 88 ASN HD22 H N N 89 ASN HXT H N N 90 DA OP3 O N N 91 DA P P N N 92 DA OP1 O N N 93 DA OP2 O N N 94 DA "O5'" O N N 95 DA "C5'" C N N 96 DA "C4'" C N R 97 DA "O4'" O N N 98 DA "C3'" C N S 99 DA "O3'" O N N 100 DA "C2'" C N N 101 DA "C1'" C N R 102 DA N9 N Y N 103 DA C8 C Y N 104 DA N7 N Y N 105 DA C5 C Y N 106 DA C6 C Y N 107 DA N6 N N N 108 DA N1 N Y N 109 DA C2 C Y N 110 DA N3 N Y N 111 DA C4 C Y N 112 DA HOP3 H N N 113 DA HOP2 H N N 114 DA "H5'" H N N 115 DA "H5''" H N N 116 DA "H4'" H N N 117 DA "H3'" H N N 118 DA "HO3'" H N N 119 DA "H2'" H N N 120 DA "H2''" H N N 121 DA "H1'" H N N 122 DA H8 H N N 123 DA H61 H N N 124 DA H62 H N N 125 DA H2 H N N 126 DC OP3 O N N 127 DC P P N N 128 DC OP1 O N N 129 DC OP2 O N N 130 DC "O5'" O N N 131 DC "C5'" C N N 132 DC "C4'" C N R 133 DC "O4'" O N N 134 DC "C3'" C N S 135 DC "O3'" O N N 136 DC "C2'" C N N 137 DC "C1'" C N R 138 DC N1 N N N 139 DC C2 C N N 140 DC O2 O N N 141 DC N3 N N N 142 DC C4 C N N 143 DC N4 N N N 144 DC C5 C N N 145 DC C6 C N N 146 DC HOP3 H N N 147 DC HOP2 H N N 148 DC "H5'" H N N 149 DC "H5''" H N N 150 DC "H4'" H N N 151 DC "H3'" H N N 152 DC "HO3'" H N N 153 DC "H2'" H N N 154 DC "H2''" H N N 155 DC "H1'" H N N 156 DC H41 H N N 157 DC H42 H N N 158 DC H5 H N N 159 DC H6 H N N 160 DG OP3 O N N 161 DG P P N N 162 DG OP1 O N N 163 DG OP2 O N N 164 DG "O5'" O N N 165 DG "C5'" C N N 166 DG "C4'" C N R 167 DG "O4'" O N N 168 DG "C3'" C N S 169 DG "O3'" O N N 170 DG "C2'" C N N 171 DG "C1'" C N R 172 DG N9 N Y N 173 DG C8 C Y N 174 DG N7 N Y N 175 DG C5 C Y N 176 DG C6 C N N 177 DG O6 O N N 178 DG N1 N N N 179 DG C2 C N N 180 DG N2 N N N 181 DG N3 N N N 182 DG C4 C Y N 183 DG HOP3 H N N 184 DG HOP2 H N N 185 DG "H5'" H N N 186 DG "H5''" H N N 187 DG "H4'" H N N 188 DG "H3'" H N N 189 DG "HO3'" H N N 190 DG "H2'" H N N 191 DG "H2''" H N N 192 DG "H1'" H N N 193 DG H8 H N N 194 DG H1 H N N 195 DG H21 H N N 196 DG H22 H N N 197 DT OP3 O N N 198 DT P P N N 199 DT OP1 O N N 200 DT OP2 O N N 201 DT "O5'" O N N 202 DT "C5'" C N N 203 DT "C4'" C N R 204 DT "O4'" O N N 205 DT "C3'" C N S 206 DT "O3'" O N N 207 DT "C2'" C N N 208 DT "C1'" C N R 209 DT N1 N N N 210 DT C2 C N N 211 DT O2 O N N 212 DT N3 N N N 213 DT C4 C N N 214 DT O4 O N N 215 DT C5 C N N 216 DT C7 C N N 217 DT C6 C N N 218 DT HOP3 H N N 219 DT HOP2 H N N 220 DT "H5'" H N N 221 DT "H5''" H N N 222 DT "H4'" H N N 223 DT "H3'" H N N 224 DT "HO3'" H N N 225 DT "H2'" H N N 226 DT "H2''" H N N 227 DT "H1'" H N N 228 DT H3 H N N 229 DT H71 H N N 230 DT H72 H N N 231 DT H73 H N N 232 DT H6 H N N 233 GLN N N N N 234 GLN CA C N S 235 GLN C C N N 236 GLN O O N N 237 GLN CB C N N 238 GLN CG C N N 239 GLN CD C N N 240 GLN OE1 O N N 241 GLN NE2 N N N 242 GLN OXT O N N 243 GLN H H N N 244 GLN H2 H N N 245 GLN HA H N N 246 GLN HB2 H N N 247 GLN HB3 H N N 248 GLN HG2 H N N 249 GLN HG3 H N N 250 GLN HE21 H N N 251 GLN HE22 H N N 252 GLN HXT H N N 253 GLU N N N N 254 GLU CA C N S 255 GLU C C N N 256 GLU O O N N 257 GLU CB C N N 258 GLU CG C N N 259 GLU CD C N N 260 GLU OE1 O N N 261 GLU OE2 O N N 262 GLU OXT O N N 263 GLU H H N N 264 GLU H2 H N N 265 GLU HA H N N 266 GLU HB2 H N N 267 GLU HB3 H N N 268 GLU HG2 H N N 269 GLU HG3 H N N 270 GLU HE2 H N N 271 GLU HXT H N N 272 GLY N N N N 273 GLY CA C N N 274 GLY C C N N 275 GLY O O N N 276 GLY OXT O N N 277 GLY H H N N 278 GLY H2 H N N 279 GLY HA2 H N N 280 GLY HA3 H N N 281 GLY HXT H N N 282 HIS N N N N 283 HIS CA C N S 284 HIS C C N N 285 HIS O O N N 286 HIS CB C N N 287 HIS CG C Y N 288 HIS ND1 N Y N 289 HIS CD2 C Y N 290 HIS CE1 C Y N 291 HIS NE2 N Y N 292 HIS OXT O N N 293 HIS H H N N 294 HIS H2 H N N 295 HIS HA H N N 296 HIS HB2 H N N 297 HIS HB3 H N N 298 HIS HD1 H N N 299 HIS HD2 H N N 300 HIS HE1 H N N 301 HIS HE2 H N N 302 HIS HXT H N N 303 HOH O O N N 304 HOH H1 H N N 305 HOH H2 H N N 306 ILE N N N N 307 ILE CA C N S 308 ILE C C N N 309 ILE O O N N 310 ILE CB C N S 311 ILE CG1 C N N 312 ILE CG2 C N N 313 ILE CD1 C N N 314 ILE OXT O N N 315 ILE H H N N 316 ILE H2 H N N 317 ILE HA H N N 318 ILE HB H N N 319 ILE HG12 H N N 320 ILE HG13 H N N 321 ILE HG21 H N N 322 ILE HG22 H N N 323 ILE HG23 H N N 324 ILE HD11 H N N 325 ILE HD12 H N N 326 ILE HD13 H N N 327 ILE HXT H N N 328 LEU N N N N 329 LEU CA C N S 330 LEU C C N N 331 LEU O O N N 332 LEU CB C N N 333 LEU CG C N N 334 LEU CD1 C N N 335 LEU CD2 C N N 336 LEU OXT O N N 337 LEU H H N N 338 LEU H2 H N N 339 LEU HA H N N 340 LEU HB2 H N N 341 LEU HB3 H N N 342 LEU HG H N N 343 LEU HD11 H N N 344 LEU HD12 H N N 345 LEU HD13 H N N 346 LEU HD21 H N N 347 LEU HD22 H N N 348 LEU HD23 H N N 349 LEU HXT H N N 350 LYS N N N N 351 LYS CA C N S 352 LYS C C N N 353 LYS O O N N 354 LYS CB C N N 355 LYS CG C N N 356 LYS CD C N N 357 LYS CE C N N 358 LYS NZ N N N 359 LYS OXT O N N 360 LYS H H N N 361 LYS H2 H N N 362 LYS HA H N N 363 LYS HB2 H N N 364 LYS HB3 H N N 365 LYS HG2 H N N 366 LYS HG3 H N N 367 LYS HD2 H N N 368 LYS HD3 H N N 369 LYS HE2 H N N 370 LYS HE3 H N N 371 LYS HZ1 H N N 372 LYS HZ2 H N N 373 LYS HZ3 H N N 374 LYS HXT H N N 375 MET N N N N 376 MET CA C N S 377 MET C C N N 378 MET O O N N 379 MET CB C N N 380 MET CG C N N 381 MET SD S N N 382 MET CE C N N 383 MET OXT O N N 384 MET H H N N 385 MET H2 H N N 386 MET HA H N N 387 MET HB2 H N N 388 MET HB3 H N N 389 MET HG2 H N N 390 MET HG3 H N N 391 MET HE1 H N N 392 MET HE2 H N N 393 MET HE3 H N N 394 MET HXT H N N 395 PHE N N N N 396 PHE CA C N S 397 PHE C C N N 398 PHE O O N N 399 PHE CB C N N 400 PHE CG C Y N 401 PHE CD1 C Y N 402 PHE CD2 C Y N 403 PHE CE1 C Y N 404 PHE CE2 C Y N 405 PHE CZ C Y N 406 PHE OXT O N N 407 PHE H H N N 408 PHE H2 H N N 409 PHE HA H N N 410 PHE HB2 H N N 411 PHE HB3 H N N 412 PHE HD1 H N N 413 PHE HD2 H N N 414 PHE HE1 H N N 415 PHE HE2 H N N 416 PHE HZ H N N 417 PHE HXT H N N 418 PRO N N N N 419 PRO CA C N S 420 PRO C C N N 421 PRO O O N N 422 PRO CB C N N 423 PRO CG C N N 424 PRO CD C N N 425 PRO OXT O N N 426 PRO H H N N 427 PRO HA H N N 428 PRO HB2 H N N 429 PRO HB3 H N N 430 PRO HG2 H N N 431 PRO HG3 H N N 432 PRO HD2 H N N 433 PRO HD3 H N N 434 PRO HXT H N N 435 SER N N N N 436 SER CA C N S 437 SER C C N N 438 SER O O N N 439 SER CB C N N 440 SER OG O N N 441 SER OXT O N N 442 SER H H N N 443 SER H2 H N N 444 SER HA H N N 445 SER HB2 H N N 446 SER HB3 H N N 447 SER HG H N N 448 SER HXT H N N 449 THR N N N N 450 THR CA C N S 451 THR C C N N 452 THR O O N N 453 THR CB C N R 454 THR OG1 O N N 455 THR CG2 C N N 456 THR OXT O N N 457 THR H H N N 458 THR H2 H N N 459 THR HA H N N 460 THR HB H N N 461 THR HG1 H N N 462 THR HG21 H N N 463 THR HG22 H N N 464 THR HG23 H N N 465 THR HXT H N N 466 TRS C C N N 467 TRS C1 C N N 468 TRS C2 C N N 469 TRS C3 C N N 470 TRS N N N N 471 TRS O1 O N N 472 TRS O2 O N N 473 TRS O3 O N N 474 TRS H11 H N N 475 TRS H12 H N N 476 TRS H21 H N N 477 TRS H22 H N N 478 TRS H31 H N N 479 TRS H32 H N N 480 TRS HN1 H N N 481 TRS HN2 H N N 482 TRS HN3 H N N 483 TRS HO1 H N N 484 TRS HO2 H N N 485 TRS HO3 H N N 486 TYR N N N N 487 TYR CA C N S 488 TYR C C N N 489 TYR O O N N 490 TYR CB C N N 491 TYR CG C Y N 492 TYR CD1 C Y N 493 TYR CD2 C Y N 494 TYR CE1 C Y N 495 TYR CE2 C Y N 496 TYR CZ C Y N 497 TYR OH O N N 498 TYR OXT O N N 499 TYR H H N N 500 TYR H2 H N N 501 TYR HA H N N 502 TYR HB2 H N N 503 TYR HB3 H N N 504 TYR HD1 H N N 505 TYR HD2 H N N 506 TYR HE1 H N N 507 TYR HE2 H N N 508 TYR HH H N N 509 TYR HXT H N N 510 VAL N N N N 511 VAL CA C N S 512 VAL C C N N 513 VAL O O N N 514 VAL CB C N N 515 VAL CG1 C N N 516 VAL CG2 C N N 517 VAL OXT O N N 518 VAL H H N N 519 VAL H2 H N N 520 VAL HA H N N 521 VAL HB H N N 522 VAL HG11 H N N 523 VAL HG12 H N N 524 VAL HG13 H N N 525 VAL HG21 H N N 526 VAL HG22 H N N 527 VAL HG23 H N N 528 VAL HXT H N N 529 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5IU N1 C2 sing N N 1 5IU N1 C6 sing N N 2 5IU N1 "C1'" sing N N 3 5IU C2 N3 sing N N 4 5IU C2 O2 doub N N 5 5IU N3 C4 sing N N 6 5IU N3 HN3 sing N N 7 5IU C4 C5 sing N N 8 5IU C4 O4 doub N N 9 5IU C5 C6 doub N N 10 5IU C5 I5 sing N N 11 5IU C6 H6 sing N N 12 5IU "C1'" "C2'" sing N N 13 5IU "C1'" "O4'" sing N N 14 5IU "C1'" "H1'" sing N N 15 5IU "C2'" "C3'" sing N N 16 5IU "C2'" "H2'" sing N N 17 5IU "C2'" "H2''" sing N N 18 5IU "C3'" "C4'" sing N N 19 5IU "C3'" "O3'" sing N N 20 5IU "C3'" "H3'" sing N N 21 5IU "C4'" "O4'" sing N N 22 5IU "C4'" "C5'" sing N N 23 5IU "C4'" "H4'" sing N N 24 5IU "O3'" "HO3'" sing N N 25 5IU "C5'" "O5'" sing N N 26 5IU "C5'" "H5'" sing N N 27 5IU "C5'" "H5''" sing N N 28 5IU "O5'" P sing N N 29 5IU P OP1 doub N N 30 5IU P OP2 sing N N 31 5IU P OP3 sing N N 32 5IU OP2 HOP2 sing N N 33 5IU OP3 HOP3 sing N N 34 ALA N CA sing N N 35 ALA N H sing N N 36 ALA N H2 sing N N 37 ALA CA C sing N N 38 ALA CA CB sing N N 39 ALA CA HA sing N N 40 ALA C O doub N N 41 ALA C OXT sing N N 42 ALA CB HB1 sing N N 43 ALA CB HB2 sing N N 44 ALA CB HB3 sing N N 45 ALA OXT HXT sing N N 46 ARG N CA sing N N 47 ARG N H sing N N 48 ARG N H2 sing N N 49 ARG CA C sing N N 50 ARG CA CB sing N N 51 ARG CA HA sing N N 52 ARG C O doub N N 53 ARG C OXT sing N N 54 ARG CB CG sing N N 55 ARG CB HB2 sing N N 56 ARG CB HB3 sing N N 57 ARG CG CD sing N N 58 ARG CG HG2 sing N N 59 ARG CG HG3 sing N N 60 ARG CD NE sing N N 61 ARG CD HD2 sing N N 62 ARG CD HD3 sing N N 63 ARG NE CZ sing N N 64 ARG NE HE sing N N 65 ARG CZ NH1 sing N N 66 ARG CZ NH2 doub N N 67 ARG NH1 HH11 sing N N 68 ARG NH1 HH12 sing N N 69 ARG NH2 HH21 sing N N 70 ARG NH2 HH22 sing N N 71 ARG OXT HXT sing N N 72 ASN N CA sing N N 73 ASN N H sing N N 74 ASN N H2 sing N N 75 ASN CA C sing N N 76 ASN CA CB sing N N 77 ASN CA HA sing N N 78 ASN C O doub N N 79 ASN C OXT sing N N 80 ASN CB CG sing N N 81 ASN CB HB2 sing N N 82 ASN CB HB3 sing N N 83 ASN CG OD1 doub N N 84 ASN CG ND2 sing N N 85 ASN ND2 HD21 sing N N 86 ASN ND2 HD22 sing N N 87 ASN OXT HXT sing N N 88 DA OP3 P sing N N 89 DA OP3 HOP3 sing N N 90 DA P OP1 doub N N 91 DA P OP2 sing N N 92 DA P "O5'" sing N N 93 DA OP2 HOP2 sing N N 94 DA "O5'" "C5'" sing N N 95 DA "C5'" "C4'" sing N N 96 DA "C5'" "H5'" sing N N 97 DA "C5'" "H5''" sing N N 98 DA "C4'" "O4'" sing N N 99 DA "C4'" "C3'" sing N N 100 DA "C4'" "H4'" sing N N 101 DA "O4'" "C1'" sing N N 102 DA "C3'" "O3'" sing N N 103 DA "C3'" "C2'" sing N N 104 DA "C3'" "H3'" sing N N 105 DA "O3'" "HO3'" sing N N 106 DA "C2'" "C1'" sing N N 107 DA "C2'" "H2'" sing N N 108 DA "C2'" "H2''" sing N N 109 DA "C1'" N9 sing N N 110 DA "C1'" "H1'" sing N N 111 DA N9 C8 sing Y N 112 DA N9 C4 sing Y N 113 DA C8 N7 doub Y N 114 DA C8 H8 sing N N 115 DA N7 C5 sing Y N 116 DA C5 C6 sing Y N 117 DA C5 C4 doub Y N 118 DA C6 N6 sing N N 119 DA C6 N1 doub Y N 120 DA N6 H61 sing N N 121 DA N6 H62 sing N N 122 DA N1 C2 sing Y N 123 DA C2 N3 doub Y N 124 DA C2 H2 sing N N 125 DA N3 C4 sing Y N 126 DC OP3 P sing N N 127 DC OP3 HOP3 sing N N 128 DC P OP1 doub N N 129 DC P OP2 sing N N 130 DC P "O5'" sing N N 131 DC OP2 HOP2 sing N N 132 DC "O5'" "C5'" sing N N 133 DC "C5'" "C4'" sing N N 134 DC "C5'" "H5'" sing N N 135 DC "C5'" "H5''" sing N N 136 DC "C4'" "O4'" sing N N 137 DC "C4'" "C3'" sing N N 138 DC "C4'" "H4'" sing N N 139 DC "O4'" "C1'" sing N N 140 DC "C3'" "O3'" sing N N 141 DC "C3'" "C2'" sing N N 142 DC "C3'" "H3'" sing N N 143 DC "O3'" "HO3'" sing N N 144 DC "C2'" "C1'" sing N N 145 DC "C2'" "H2'" sing N N 146 DC "C2'" "H2''" sing N N 147 DC "C1'" N1 sing N N 148 DC "C1'" "H1'" sing N N 149 DC N1 C2 sing N N 150 DC N1 C6 sing N N 151 DC C2 O2 doub N N 152 DC C2 N3 sing N N 153 DC N3 C4 doub N N 154 DC C4 N4 sing N N 155 DC C4 C5 sing N N 156 DC N4 H41 sing N N 157 DC N4 H42 sing N N 158 DC C5 C6 doub N N 159 DC C5 H5 sing N N 160 DC C6 H6 sing N N 161 DG OP3 P sing N N 162 DG OP3 HOP3 sing N N 163 DG P OP1 doub N N 164 DG P OP2 sing N N 165 DG P "O5'" sing N N 166 DG OP2 HOP2 sing N N 167 DG "O5'" "C5'" sing N N 168 DG "C5'" "C4'" sing N N 169 DG "C5'" "H5'" sing N N 170 DG "C5'" "H5''" sing N N 171 DG "C4'" "O4'" sing N N 172 DG "C4'" "C3'" sing N N 173 DG "C4'" "H4'" sing N N 174 DG "O4'" "C1'" sing N N 175 DG "C3'" "O3'" sing N N 176 DG "C3'" "C2'" sing N N 177 DG "C3'" "H3'" sing N N 178 DG "O3'" "HO3'" sing N N 179 DG "C2'" "C1'" sing N N 180 DG "C2'" "H2'" sing N N 181 DG "C2'" "H2''" sing N N 182 DG "C1'" N9 sing N N 183 DG "C1'" "H1'" sing N N 184 DG N9 C8 sing Y N 185 DG N9 C4 sing Y N 186 DG C8 N7 doub Y N 187 DG C8 H8 sing N N 188 DG N7 C5 sing Y N 189 DG C5 C6 sing N N 190 DG C5 C4 doub Y N 191 DG C6 O6 doub N N 192 DG C6 N1 sing N N 193 DG N1 C2 sing N N 194 DG N1 H1 sing N N 195 DG C2 N2 sing N N 196 DG C2 N3 doub N N 197 DG N2 H21 sing N N 198 DG N2 H22 sing N N 199 DG N3 C4 sing N N 200 DT OP3 P sing N N 201 DT OP3 HOP3 sing N N 202 DT P OP1 doub N N 203 DT P OP2 sing N N 204 DT P "O5'" sing N N 205 DT OP2 HOP2 sing N N 206 DT "O5'" "C5'" sing N N 207 DT "C5'" "C4'" sing N N 208 DT "C5'" "H5'" sing N N 209 DT "C5'" "H5''" sing N N 210 DT "C4'" "O4'" sing N N 211 DT "C4'" "C3'" sing N N 212 DT "C4'" "H4'" sing N N 213 DT "O4'" "C1'" sing N N 214 DT "C3'" "O3'" sing N N 215 DT "C3'" "C2'" sing N N 216 DT "C3'" "H3'" sing N N 217 DT "O3'" "HO3'" sing N N 218 DT "C2'" "C1'" sing N N 219 DT "C2'" "H2'" sing N N 220 DT "C2'" "H2''" sing N N 221 DT "C1'" N1 sing N N 222 DT "C1'" "H1'" sing N N 223 DT N1 C2 sing N N 224 DT N1 C6 sing N N 225 DT C2 O2 doub N N 226 DT C2 N3 sing N N 227 DT N3 C4 sing N N 228 DT N3 H3 sing N N 229 DT C4 O4 doub N N 230 DT C4 C5 sing N N 231 DT C5 C7 sing N N 232 DT C5 C6 doub N N 233 DT C7 H71 sing N N 234 DT C7 H72 sing N N 235 DT C7 H73 sing N N 236 DT C6 H6 sing N N 237 GLN N CA sing N N 238 GLN N H sing N N 239 GLN N H2 sing N N 240 GLN CA C sing N N 241 GLN CA CB sing N N 242 GLN CA HA sing N N 243 GLN C O doub N N 244 GLN C OXT sing N N 245 GLN CB CG sing N N 246 GLN CB HB2 sing N N 247 GLN CB HB3 sing N N 248 GLN CG CD sing N N 249 GLN CG HG2 sing N N 250 GLN CG HG3 sing N N 251 GLN CD OE1 doub N N 252 GLN CD NE2 sing N N 253 GLN NE2 HE21 sing N N 254 GLN NE2 HE22 sing N N 255 GLN OXT HXT sing N N 256 GLU N CA sing N N 257 GLU N H sing N N 258 GLU N H2 sing N N 259 GLU CA C sing N N 260 GLU CA CB sing N N 261 GLU CA HA sing N N 262 GLU C O doub N N 263 GLU C OXT sing N N 264 GLU CB CG sing N N 265 GLU CB HB2 sing N N 266 GLU CB HB3 sing N N 267 GLU CG CD sing N N 268 GLU CG HG2 sing N N 269 GLU CG HG3 sing N N 270 GLU CD OE1 doub N N 271 GLU CD OE2 sing N N 272 GLU OE2 HE2 sing N N 273 GLU OXT HXT sing N N 274 GLY N CA sing N N 275 GLY N H sing N N 276 GLY N H2 sing N N 277 GLY CA C sing N N 278 GLY CA HA2 sing N N 279 GLY CA HA3 sing N N 280 GLY C O doub N N 281 GLY C OXT sing N N 282 GLY OXT HXT sing N N 283 HIS N CA sing N N 284 HIS N H sing N N 285 HIS N H2 sing N N 286 HIS CA C sing N N 287 HIS CA CB sing N N 288 HIS CA HA sing N N 289 HIS C O doub N N 290 HIS C OXT sing N N 291 HIS CB CG sing N N 292 HIS CB HB2 sing N N 293 HIS CB HB3 sing N N 294 HIS CG ND1 sing Y N 295 HIS CG CD2 doub Y N 296 HIS ND1 CE1 doub Y N 297 HIS ND1 HD1 sing N N 298 HIS CD2 NE2 sing Y N 299 HIS CD2 HD2 sing N N 300 HIS CE1 NE2 sing Y N 301 HIS CE1 HE1 sing N N 302 HIS NE2 HE2 sing N N 303 HIS OXT HXT sing N N 304 HOH O H1 sing N N 305 HOH O H2 sing N N 306 ILE N CA sing N N 307 ILE N H sing N N 308 ILE N H2 sing N N 309 ILE CA C sing N N 310 ILE CA CB sing N N 311 ILE CA HA sing N N 312 ILE C O doub N N 313 ILE C OXT sing N N 314 ILE CB CG1 sing N N 315 ILE CB CG2 sing N N 316 ILE CB HB sing N N 317 ILE CG1 CD1 sing N N 318 ILE CG1 HG12 sing N N 319 ILE CG1 HG13 sing N N 320 ILE CG2 HG21 sing N N 321 ILE CG2 HG22 sing N N 322 ILE CG2 HG23 sing N N 323 ILE CD1 HD11 sing N N 324 ILE CD1 HD12 sing N N 325 ILE CD1 HD13 sing N N 326 ILE OXT HXT sing N N 327 LEU N CA sing N N 328 LEU N H sing N N 329 LEU N H2 sing N N 330 LEU CA C sing N N 331 LEU CA CB sing N N 332 LEU CA HA sing N N 333 LEU C O doub N N 334 LEU C OXT sing N N 335 LEU CB CG sing N N 336 LEU CB HB2 sing N N 337 LEU CB HB3 sing N N 338 LEU CG CD1 sing N N 339 LEU CG CD2 sing N N 340 LEU CG HG sing N N 341 LEU CD1 HD11 sing N N 342 LEU CD1 HD12 sing N N 343 LEU CD1 HD13 sing N N 344 LEU CD2 HD21 sing N N 345 LEU CD2 HD22 sing N N 346 LEU CD2 HD23 sing N N 347 LEU OXT HXT sing N N 348 LYS N CA sing N N 349 LYS N H sing N N 350 LYS N H2 sing N N 351 LYS CA C sing N N 352 LYS CA CB sing N N 353 LYS CA HA sing N N 354 LYS C O doub N N 355 LYS C OXT sing N N 356 LYS CB CG sing N N 357 LYS CB HB2 sing N N 358 LYS CB HB3 sing N N 359 LYS CG CD sing N N 360 LYS CG HG2 sing N N 361 LYS CG HG3 sing N N 362 LYS CD CE sing N N 363 LYS CD HD2 sing N N 364 LYS CD HD3 sing N N 365 LYS CE NZ sing N N 366 LYS CE HE2 sing N N 367 LYS CE HE3 sing N N 368 LYS NZ HZ1 sing N N 369 LYS NZ HZ2 sing N N 370 LYS NZ HZ3 sing N N 371 LYS OXT HXT sing N N 372 MET N CA sing N N 373 MET N H sing N N 374 MET N H2 sing N N 375 MET CA C sing N N 376 MET CA CB sing N N 377 MET CA HA sing N N 378 MET C O doub N N 379 MET C OXT sing N N 380 MET CB CG sing N N 381 MET CB HB2 sing N N 382 MET CB HB3 sing N N 383 MET CG SD sing N N 384 MET CG HG2 sing N N 385 MET CG HG3 sing N N 386 MET SD CE sing N N 387 MET CE HE1 sing N N 388 MET CE HE2 sing N N 389 MET CE HE3 sing N N 390 MET OXT HXT sing N N 391 PHE N CA sing N N 392 PHE N H sing N N 393 PHE N H2 sing N N 394 PHE CA C sing N N 395 PHE CA CB sing N N 396 PHE CA HA sing N N 397 PHE C O doub N N 398 PHE C OXT sing N N 399 PHE CB CG sing N N 400 PHE CB HB2 sing N N 401 PHE CB HB3 sing N N 402 PHE CG CD1 doub Y N 403 PHE CG CD2 sing Y N 404 PHE CD1 CE1 sing Y N 405 PHE CD1 HD1 sing N N 406 PHE CD2 CE2 doub Y N 407 PHE CD2 HD2 sing N N 408 PHE CE1 CZ doub Y N 409 PHE CE1 HE1 sing N N 410 PHE CE2 CZ sing Y N 411 PHE CE2 HE2 sing N N 412 PHE CZ HZ sing N N 413 PHE OXT HXT sing N N 414 PRO N CA sing N N 415 PRO N CD sing N N 416 PRO N H sing N N 417 PRO CA C sing N N 418 PRO CA CB sing N N 419 PRO CA HA sing N N 420 PRO C O doub N N 421 PRO C OXT sing N N 422 PRO CB CG sing N N 423 PRO CB HB2 sing N N 424 PRO CB HB3 sing N N 425 PRO CG CD sing N N 426 PRO CG HG2 sing N N 427 PRO CG HG3 sing N N 428 PRO CD HD2 sing N N 429 PRO CD HD3 sing N N 430 PRO OXT HXT sing N N 431 SER N CA sing N N 432 SER N H sing N N 433 SER N H2 sing N N 434 SER CA C sing N N 435 SER CA CB sing N N 436 SER CA HA sing N N 437 SER C O doub N N 438 SER C OXT sing N N 439 SER CB OG sing N N 440 SER CB HB2 sing N N 441 SER CB HB3 sing N N 442 SER OG HG sing N N 443 SER OXT HXT sing N N 444 THR N CA sing N N 445 THR N H sing N N 446 THR N H2 sing N N 447 THR CA C sing N N 448 THR CA CB sing N N 449 THR CA HA sing N N 450 THR C O doub N N 451 THR C OXT sing N N 452 THR CB OG1 sing N N 453 THR CB CG2 sing N N 454 THR CB HB sing N N 455 THR OG1 HG1 sing N N 456 THR CG2 HG21 sing N N 457 THR CG2 HG22 sing N N 458 THR CG2 HG23 sing N N 459 THR OXT HXT sing N N 460 TRS C C1 sing N N 461 TRS C C2 sing N N 462 TRS C C3 sing N N 463 TRS C N sing N N 464 TRS C1 O1 sing N N 465 TRS C1 H11 sing N N 466 TRS C1 H12 sing N N 467 TRS C2 O2 sing N N 468 TRS C2 H21 sing N N 469 TRS C2 H22 sing N N 470 TRS C3 O3 sing N N 471 TRS C3 H31 sing N N 472 TRS C3 H32 sing N N 473 TRS N HN1 sing N N 474 TRS N HN2 sing N N 475 TRS N HN3 sing N N 476 TRS O1 HO1 sing N N 477 TRS O2 HO2 sing N N 478 TRS O3 HO3 sing N N 479 TYR N CA sing N N 480 TYR N H sing N N 481 TYR N H2 sing N N 482 TYR CA C sing N N 483 TYR CA CB sing N N 484 TYR CA HA sing N N 485 TYR C O doub N N 486 TYR C OXT sing N N 487 TYR CB CG sing N N 488 TYR CB HB2 sing N N 489 TYR CB HB3 sing N N 490 TYR CG CD1 doub Y N 491 TYR CG CD2 sing Y N 492 TYR CD1 CE1 sing Y N 493 TYR CD1 HD1 sing N N 494 TYR CD2 CE2 doub Y N 495 TYR CD2 HD2 sing N N 496 TYR CE1 CZ doub Y N 497 TYR CE1 HE1 sing N N 498 TYR CE2 CZ sing Y N 499 TYR CE2 HE2 sing N N 500 TYR CZ OH sing N N 501 TYR OH HH sing N N 502 TYR OXT HXT sing N N 503 VAL N CA sing N N 504 VAL N H sing N N 505 VAL N H2 sing N N 506 VAL CA C sing N N 507 VAL CA CB sing N N 508 VAL CA HA sing N N 509 VAL C O doub N N 510 VAL C OXT sing N N 511 VAL CB CG1 sing N N 512 VAL CB CG2 sing N N 513 VAL CB HB sing N N 514 VAL CG1 HG11 sing N N 515 VAL CG1 HG12 sing N N 516 VAL CG1 HG13 sing N N 517 VAL CG2 HG21 sing N N 518 VAL CG2 HG22 sing N N 519 VAL CG2 HG23 sing N N 520 VAL OXT HXT sing N N 521 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1JJ6 'double helix' 1JJ6 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 B DC 14 1_555 -0.049 0.012 -0.530 -14.120 6.513 4.467 1 A_DG3:DC29_B A 3 ? B 29 ? 19 1 1 A DT 3 1_555 B DA 13 1_555 0.222 0.063 0.071 -1.034 -8.971 -9.020 2 A_DT4:DA28_B A 4 ? B 28 ? 20 1 1 A 5IU 4 1_555 B DA 12 1_555 0.796 0.174 -0.076 -2.105 -20.074 4.715 3 A_5IU5:DA27_B A 5 ? B 27 ? ? ? 1 A DT 5 1_555 B DA 11 1_555 -0.206 -0.045 -0.489 0.935 -27.209 -0.385 4 A_DT6:DA26_B A 6 ? B 26 ? 20 1 1 A DT 6 1_555 B DA 10 1_555 -0.718 -0.101 -0.355 -8.346 -11.555 -0.963 5 A_DT7:DA25_B A 7 ? B 25 ? 20 1 1 A DT 7 1_555 B DA 9 1_555 -0.339 0.129 -0.111 -6.663 -16.533 -0.738 6 A_DT8:DA24_B A 8 ? B 24 ? 20 1 1 A DG 8 1_555 B DC 8 1_555 0.119 -0.012 -0.016 1.910 -4.363 0.896 7 A_DG9:DC23_B A 9 ? B 23 ? 19 1 1 A DA 9 1_555 B DT 7 1_555 0.516 -0.172 0.195 7.547 -12.339 -4.689 8 A_DA10:DT22_B A 10 ? B 22 ? 20 1 1 A DT 10 1_555 B DA 6 1_555 -0.279 -0.133 -0.106 -2.695 -7.246 0.820 9 A_DT11:DA21_B A 11 ? B 21 ? 20 1 1 A DA 11 1_555 B DT 5 1_555 0.506 -0.379 -0.511 2.007 -12.230 -3.754 10 A_DA12:DT20_B A 12 ? B 20 ? 20 1 1 A DA 12 1_555 B DT 4 1_555 0.045 -0.004 -0.025 8.226 -13.926 1.990 11 A_DA13:DT19_B A 13 ? B 19 ? 20 1 1 A DG 13 1_555 B DC 3 1_555 0.143 -0.163 -0.094 2.289 -13.088 0.916 12 A_DG14:DC18_B A 14 ? B 18 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 B DC 14 1_555 A DT 3 1_555 B DA 13 1_555 -1.199 -0.291 3.112 -3.933 9.551 32.502 -1.960 1.444 3.029 16.550 6.816 34.062 1 AA_DG3DT4:DA28DC29_BB A 3 ? B 29 ? A 4 ? B 28 ? 1 A DT 3 1_555 B DA 13 1_555 A 5IU 4 1_555 B DA 12 1_555 0.561 -0.224 3.228 4.723 5.357 31.416 -1.354 -0.173 3.195 9.736 -8.584 32.197 2 AA_DT45IU5:DA27DA28_BB A 4 ? B 28 ? A 5 ? B 27 ? 1 A 5IU 4 1_555 B DA 12 1_555 A DT 5 1_555 B DA 11 1_555 -0.645 0.322 3.062 1.927 5.952 31.188 -0.436 1.509 3.026 10.932 -3.539 31.794 3 AA_5IU5DT6:DA26DA27_BB A 5 ? B 27 ? A 6 ? B 26 ? 1 A DT 5 1_555 B DA 11 1_555 A DT 6 1_555 B DA 10 1_555 0.906 0.569 3.540 1.560 -1.691 38.750 1.080 -1.157 3.546 -2.546 -2.349 38.816 4 AA_DT6DT7:DA25DA26_BB A 6 ? B 26 ? A 7 ? B 25 ? 1 A DT 6 1_555 B DA 10 1_555 A DT 7 1_555 B DA 9 1_555 -0.548 -0.220 3.251 -3.605 0.591 36.388 -0.432 0.377 3.285 0.943 5.755 36.565 5 AA_DT7DT8:DA24DA25_BB A 7 ? B 25 ? A 8 ? B 24 ? 1 A DT 7 1_555 B DA 9 1_555 A DG 8 1_555 B DC 8 1_555 0.788 1.072 3.217 0.972 3.084 38.990 1.231 -1.061 3.307 4.610 -1.453 39.119 6 AA_DT8DG9:DC23DA24_BB A 8 ? B 24 ? A 9 ? B 23 ? 1 A DG 8 1_555 B DC 8 1_555 A DA 9 1_555 B DT 7 1_555 -0.947 0.852 3.199 -4.118 2.971 37.780 0.927 0.928 3.335 4.563 6.325 38.107 7 AA_DG9DA10:DT22DC23_BB A 9 ? B 23 ? A 10 ? B 22 ? 1 A DA 9 1_555 B DT 7 1_555 A DT 10 1_555 B DA 6 1_555 0.709 -0.843 3.723 1.822 -0.620 27.468 -1.597 -0.977 3.778 -1.305 -3.831 27.534 8 AA_DA10DT11:DA21DT22_BB A 10 ? B 22 ? A 11 ? B 21 ? 1 A DT 10 1_555 B DA 6 1_555 A DA 11 1_555 B DT 5 1_555 -0.452 1.269 3.385 1.664 8.302 40.435 0.844 0.833 3.546 11.855 -2.376 41.276 9 AA_DT11DA12:DT20DA21_BB A 11 ? B 21 ? A 12 ? B 20 ? 1 A DA 11 1_555 B DT 5 1_555 A DA 12 1_555 B DT 4 1_555 0.418 0.209 3.097 -1.830 -0.541 31.299 0.483 -1.098 3.064 -1.002 3.388 31.356 10 AA_DA12DA13:DT19DT20_BB A 12 ? B 20 ? A 13 ? B 19 ? 1 A DA 12 1_555 B DT 4 1_555 A DG 13 1_555 B DC 3 1_555 0.163 -0.446 3.503 -1.519 10.002 34.280 -2.252 -0.497 3.240 16.528 2.510 35.699 11 AA_DA13DG14:DC18DT19_BB A 13 ? B 19 ? A 14 ? B 18 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'MIRAS PHASES' # _atom_sites.entry_id 1JJ6 _atom_sites.fract_transf_matrix[1][1] 0.011521 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012177 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022107 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C I N O P # loop_