HEADER HYDROLASE 04-JUL-01 1JJE TITLE IMP-1 METALLO BETA-LACTAMASE FROM PSEUDOMONAS AERUGINOSA IN COMPLEX TITLE 2 WITH A BIARYL SUCCINIC ACID INHIBITOR (11) COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMP-1 METALLO BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: METALLO-BETA-LACTAMASE; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: PLEASE NOTE THAT THE PROTEIN CONTAINS POSTRANSLATIONAL COMPND 8 MODIFICATION: ATOM CG OF ASN 26 IS BOUND TO ATOM N OF GLY 27. THIS COMPND 9 ACCOUNTS FOR MISSING ATOMS LISTED IN REMARK 470 AND DISTORTED COMPND 10 GEOMETRY REPORTED FOR THESE RESIDUES. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METALLO-BETA-LACTAMASE INHIBITOR, SUCCINIC ACID INHIBITOR, IMP-1 KEYWDS 2 METALLO-BETA-LACTAMASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.M.D.FITZGERALD,N.SHARMA REVDAT 8 03-APR-24 1JJE 1 REMARK LINK REVDAT 7 14-FEB-18 1JJE 1 REMARK REVDAT 6 04-OCT-17 1JJE 1 REMARK REVDAT 5 13-JUL-11 1JJE 1 VERSN REVDAT 4 24-FEB-09 1JJE 1 VERSN REVDAT 3 01-APR-03 1JJE 1 JRNL REVDAT 2 08-AUG-01 1JJE 1 JRNL REMARK REVDAT 1 25-JUL-01 1JJE 0 JRNL AUTH J.H.TONEY,G.G.HAMMOND,P.M.FITZGERALD,N.SHARMA,J.M.BALKOVEC, JRNL AUTH 2 G.P.ROUEN,S.H.OLSON,M.L.HAMMOND,M.L.GREENLEE,Y.D.GAO JRNL TITL SUCCINIC ACIDS AS POTENT INHIBITORS OF PLASMID-BORNE IMP-1 JRNL TITL 2 METALLO-BETA-LACTAMASE. JRNL REF J.BIOL.CHEM. V. 276 31913 2001 JRNL REFN ISSN 0021-9258 JRNL PMID 11390410 JRNL DOI 10.1074/JBC.M104742200 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : -3.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.201 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.201 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 1760 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 34043 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.178 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 1388 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 27272 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3440 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 184 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 3688.0 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 0.00 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 0 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 14767 REMARK 3 NUMBER OF RESTRAINTS : 14533 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 ANGLE DISTANCES (A) : 0.023 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.087 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.337 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.035 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.038 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.007 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.087 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: SHELXL 97 SWAT PARAMETER REFINEMENT REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JJE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-01. REMARK 100 THE DEPOSITION ID IS D_1000013841. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : X-GEN REMARK 200 DATA SCALING SOFTWARE : X-GEN REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35791 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.590 REMARK 200 R MERGE (I) : 0.07520 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0050 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.49970 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.336 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: RELATED STRUCTURE REMARK 200 STARTING MODEL: ANOTHER INHIBITED COMPLEX IN THE SAME SPACE GROUP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG MONOMETHYL ETHER 550, ZINC REMARK 280 ACETATE, MES PH 6.7-7.1, 310 K, PH 6.9, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 310K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.62000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -244.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 59.26138 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 21.62000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 63.06484 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 GLU A 2 REMARK 465 LYS B 222 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 92 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 26 -117.97 50.67 REMARK 500 ASN A 41 -116.68 61.14 REMARK 500 ASP A 48 143.98 73.37 REMARK 500 PRO A 50 170.12 -51.85 REMARK 500 ASN A 128 23.12 49.68 REMARK 500 LYS A 129 -46.94 -133.98 REMARK 500 ASP A 202 -156.40 -111.06 REMARK 500 ASN B 26 -115.88 40.13 REMARK 500 ASN B 41 -117.31 58.38 REMARK 500 ASP B 48 147.60 70.51 REMARK 500 PRO B 50 173.93 -57.80 REMARK 500 LYS B 129 -37.72 -134.42 REMARK 500 ASP B 202 -157.91 -112.85 REMARK 500 SER B 220 23.81 -74.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 261 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 34 NE2 REMARK 620 2 GLU A 199 OE1 99.8 REMARK 620 3 GLU A 199 OE2 90.5 55.2 REMARK 620 4 ACT A 260 O 97.5 120.8 68.6 REMARK 620 5 ACT A 260 OXT 132.4 127.3 109.7 55.5 REMARK 620 6 HOH A1031 O 102.2 77.8 132.8 150.0 94.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 251 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 77 NE2 REMARK 620 2 HIS A 79 ND1 97.7 REMARK 620 3 HIS A 139 NE2 105.0 107.8 REMARK 620 4 BYS A 250 O3 122.6 113.3 109.1 REMARK 620 5 BYS A 250 O4 170.4 79.3 84.6 51.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 252 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 81 OD2 REMARK 620 2 CYS A 158 SG 106.9 REMARK 620 3 HIS A 197 NE2 89.9 107.9 REMARK 620 4 BYS A 250 O3 91.3 110.2 139.7 REMARK 620 5 BYS A 250 O14 150.6 102.5 79.6 79.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 261 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 34 NE2 REMARK 620 2 GLU B 199 OE1 94.9 REMARK 620 3 GLU B 199 OE2 104.2 56.1 REMARK 620 4 ACT B 260 O 102.4 77.2 127.4 REMARK 620 5 ACT B 260 OXT 131.7 114.5 123.8 53.4 REMARK 620 6 HOH B1019 O 102.3 151.7 97.5 119.9 69.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 251 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 77 NE2 REMARK 620 2 HIS B 79 ND1 98.7 REMARK 620 3 HIS B 139 NE2 105.5 109.6 REMARK 620 4 BYS B 250 O3 121.1 113.6 107.7 REMARK 620 5 BYS B 250 O4 170.1 80.3 84.0 51.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 252 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 81 OD2 REMARK 620 2 CYS B 158 SG 109.5 REMARK 620 3 HIS B 197 NE2 91.2 110.8 REMARK 620 4 BYS B 250 O14 150.2 100.2 79.5 REMARK 620 5 BYS B 250 O3 91.4 110.1 135.4 76.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BYS A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BYS B 250 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JJT RELATED DB: PDB REMARK 900 IMP-1 METALLO BETA-LACTAMASE IN COMPLEX WITH 2,3-BIS-BENZO[1,3] REMARK 900 DIOXOL-5-YLMETHYL-SUCCINIC ACID DBREF 1JJE A 1 222 UNP P52699 BLAB_SERMA 19 240 DBREF 1JJE B 1 222 UNP P52699 BLAB_SERMA 19 240 SEQRES 1 A 222 ALA GLU SER LEU PRO ASP LEU LYS ILE GLU LYS LEU ASP SEQRES 2 A 222 GLU GLY VAL TYR VAL HIS THR SER PHE GLU GLU VAL ASN SEQRES 3 A 222 GLY TRP GLY VAL VAL PRO LYS HIS GLY LEU VAL VAL LEU SEQRES 4 A 222 VAL ASN ALA GLU ALA TYR LEU ILE ASP THR PRO PHE THR SEQRES 5 A 222 ALA LYS ASP THR GLU LYS LEU VAL THR TRP PHE VAL GLU SEQRES 6 A 222 ARG GLY TYR LYS ILE LYS GLY SER ILE SER SER HIS PHE SEQRES 7 A 222 HIS SER ASP SER THR GLY GLY ILE GLU TRP LEU ASN SER SEQRES 8 A 222 ARG SER ILE PRO THR TYR ALA SER GLU LEU THR ASN GLU SEQRES 9 A 222 LEU LEU LYS LYS ASP GLY LYS VAL GLN ALA THR ASN SER SEQRES 10 A 222 PHE SER GLY VAL ASN TYR TRP LEU VAL LYS ASN LYS ILE SEQRES 11 A 222 GLU VAL PHE TYR PRO GLY PRO GLY HIS THR PRO ASP ASN SEQRES 12 A 222 VAL VAL VAL TRP LEU PRO GLU ARG LYS ILE LEU PHE GLY SEQRES 13 A 222 GLY CYS PHE ILE LYS PRO TYR GLY LEU GLY ASN LEU GLY SEQRES 14 A 222 ASP ALA ASN ILE GLU ALA TRP PRO LYS SER ALA LYS LEU SEQRES 15 A 222 LEU LYS SER LYS TYR GLY LYS ALA LYS LEU VAL VAL PRO SEQRES 16 A 222 SER HIS SER GLU VAL GLY ASP ALA SER LEU LEU LYS LEU SEQRES 17 A 222 THR LEU GLU GLN ALA VAL LYS GLY LEU ASN GLU SER LYS SEQRES 18 A 222 LYS SEQRES 1 B 222 ALA GLU SER LEU PRO ASP LEU LYS ILE GLU LYS LEU ASP SEQRES 2 B 222 GLU GLY VAL TYR VAL HIS THR SER PHE GLU GLU VAL ASN SEQRES 3 B 222 GLY TRP GLY VAL VAL PRO LYS HIS GLY LEU VAL VAL LEU SEQRES 4 B 222 VAL ASN ALA GLU ALA TYR LEU ILE ASP THR PRO PHE THR SEQRES 5 B 222 ALA LYS ASP THR GLU LYS LEU VAL THR TRP PHE VAL GLU SEQRES 6 B 222 ARG GLY TYR LYS ILE LYS GLY SER ILE SER SER HIS PHE SEQRES 7 B 222 HIS SER ASP SER THR GLY GLY ILE GLU TRP LEU ASN SER SEQRES 8 B 222 ARG SER ILE PRO THR TYR ALA SER GLU LEU THR ASN GLU SEQRES 9 B 222 LEU LEU LYS LYS ASP GLY LYS VAL GLN ALA THR ASN SER SEQRES 10 B 222 PHE SER GLY VAL ASN TYR TRP LEU VAL LYS ASN LYS ILE SEQRES 11 B 222 GLU VAL PHE TYR PRO GLY PRO GLY HIS THR PRO ASP ASN SEQRES 12 B 222 VAL VAL VAL TRP LEU PRO GLU ARG LYS ILE LEU PHE GLY SEQRES 13 B 222 GLY CYS PHE ILE LYS PRO TYR GLY LEU GLY ASN LEU GLY SEQRES 14 B 222 ASP ALA ASN ILE GLU ALA TRP PRO LYS SER ALA LYS LEU SEQRES 15 B 222 LEU LYS SER LYS TYR GLY LYS ALA LYS LEU VAL VAL PRO SEQRES 16 B 222 SER HIS SER GLU VAL GLY ASP ALA SER LEU LEU LYS LEU SEQRES 17 B 222 THR LEU GLU GLN ALA VAL LYS GLY LEU ASN GLU SER LYS SEQRES 18 B 222 LYS HET ZN A 251 1 HET ZN A 252 1 HET ACT A 260 4 HET ZN A 261 1 HET BYS A 250 25 HET ZN B 251 1 HET ZN B 252 1 HET ACT B 260 4 HET ZN B 261 1 HET BYS B 250 25 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETNAM BYS 2-BENZO[1,3]DIOXOL-5-YLMETHYL-3-BENZYL-SUCCINIC ACID FORMUL 3 ZN 6(ZN 2+) FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 7 BYS 2(C19 H18 O6) FORMUL 13 HOH *184(H2 O) HELIX 1 1 THR A 52 GLY A 67 1 16 HELIX 2 2 HIS A 79 GLY A 84 1 6 HELIX 3 3 GLY A 85 SER A 91 1 7 HELIX 4 4 GLU A 100 ASP A 109 1 10 HELIX 5 5 CYS A 158 ILE A 160 5 3 HELIX 6 6 ASN A 167 ALA A 171 5 5 HELIX 7 7 ALA A 175 TYR A 187 1 13 HELIX 8 8 ALA A 203 LYS A 222 1 20 HELIX 9 9 THR B 52 GLU B 65 1 14 HELIX 10 10 HIS B 79 GLY B 84 1 6 HELIX 11 11 GLY B 85 ARG B 92 1 8 HELIX 12 12 GLU B 100 ASP B 109 1 10 HELIX 13 13 CYS B 158 ILE B 160 5 3 HELIX 14 14 ALA B 175 TYR B 187 1 13 HELIX 15 15 ALA B 203 SER B 220 1 18 SHEET 1 A 7 LYS A 8 ASP A 13 0 SHEET 2 A 7 VAL A 16 GLU A 24 -1 O VAL A 16 N LEU A 12 SHEET 3 A 7 VAL A 30 VAL A 40 -1 N VAL A 31 O GLU A 23 SHEET 4 A 7 GLU A 43 ILE A 47 -1 O GLU A 43 N VAL A 40 SHEET 5 A 7 LYS A 69 ILE A 74 1 O LYS A 69 N ALA A 44 SHEET 6 A 7 THR A 96 SER A 99 1 N TYR A 97 O SER A 73 SHEET 7 A 7 ASN A 116 PHE A 118 1 O ASN A 116 N ALA A 98 SHEET 1 B 5 ASN A 122 VAL A 126 0 SHEET 2 B 5 ILE A 130 PHE A 133 -1 N ILE A 130 O VAL A 126 SHEET 3 B 5 VAL A 145 LEU A 148 -1 N VAL A 145 O PHE A 133 SHEET 4 B 5 ILE A 153 GLY A 157 -1 O ILE A 153 N LEU A 148 SHEET 5 B 5 LEU A 192 PRO A 195 1 O LEU A 192 N LEU A 154 SHEET 1 C 7 LYS B 8 ASP B 13 0 SHEET 2 C 7 VAL B 16 GLU B 24 -1 O VAL B 16 N LEU B 12 SHEET 3 C 7 VAL B 30 VAL B 40 -1 N VAL B 31 O GLU B 23 SHEET 4 C 7 GLU B 43 ILE B 47 -1 O GLU B 43 N VAL B 40 SHEET 5 C 7 LYS B 69 ILE B 74 1 O LYS B 69 N ALA B 44 SHEET 6 C 7 THR B 96 SER B 99 1 N TYR B 97 O SER B 73 SHEET 7 C 7 ASN B 116 PHE B 118 1 N ASN B 116 O THR B 96 SHEET 1 D 5 ASN B 122 VAL B 126 0 SHEET 2 D 5 ILE B 130 PHE B 133 -1 N ILE B 130 O VAL B 126 SHEET 3 D 5 VAL B 145 LEU B 148 -1 N VAL B 145 O PHE B 133 SHEET 4 D 5 ILE B 153 GLY B 157 -1 O ILE B 153 N LEU B 148 SHEET 5 D 5 LEU B 192 PRO B 195 1 O LEU B 192 N LEU B 154 LINK CG ASN A 26 N GLY A 27 1555 1555 1.33 LINK CG ASN B 26 N GLY B 27 1555 1555 1.33 LINK NE2 HIS A 34 ZN ZN A 261 1555 1555 2.10 LINK NE2 HIS A 77 ZN ZN A 251 1555 1555 2.09 LINK ND1 HIS A 79 ZN ZN A 251 1555 1555 2.06 LINK OD2 ASP A 81 ZN ZN A 252 1555 1555 2.03 LINK NE2 HIS A 139 ZN ZN A 251 1555 1555 1.99 LINK SG CYS A 158 ZN ZN A 252 1555 1555 2.28 LINK NE2 HIS A 197 ZN ZN A 252 1555 1555 2.15 LINK OE1 GLU A 199 ZN ZN A 261 1555 1555 2.37 LINK OE2 GLU A 199 ZN ZN A 261 1555 1555 2.34 LINK O3 BYS A 250 ZN ZN A 251 1555 1555 2.00 LINK O4 BYS A 250 ZN ZN A 251 1555 1555 2.68 LINK O3 BYS A 250 ZN ZN A 252 1555 1555 2.14 LINK O14 BYS A 250 ZN ZN A 252 1555 1555 2.30 LINK O ACT A 260 ZN ZN A 261 1555 1555 1.85 LINK OXT ACT A 260 ZN ZN A 261 1555 1555 2.63 LINK ZN ZN A 261 O HOH A1031 1555 1555 2.08 LINK NE2 HIS B 34 ZN ZN B 261 1555 1555 2.07 LINK NE2 HIS B 77 ZN ZN B 251 1555 1555 2.09 LINK ND1 HIS B 79 ZN ZN B 251 1555 1555 2.08 LINK OD2 ASP B 81 ZN ZN B 252 1555 1555 2.00 LINK NE2 HIS B 139 ZN ZN B 251 1555 1555 1.98 LINK SG CYS B 158 ZN ZN B 252 1555 1555 2.31 LINK NE2 HIS B 197 ZN ZN B 252 1555 1555 2.15 LINK OE1 GLU B 199 ZN ZN B 261 1555 1555 2.35 LINK OE2 GLU B 199 ZN ZN B 261 1555 1555 2.25 LINK O3 BYS B 250 ZN ZN B 251 1555 1555 2.03 LINK O4 BYS B 250 ZN ZN B 251 1555 1555 2.72 LINK O14 BYS B 250 ZN ZN B 252 1555 1555 2.32 LINK O3 BYS B 250 ZN ZN B 252 1555 1555 2.14 LINK O ACT B 260 ZN ZN B 261 1555 1555 1.86 LINK OXT ACT B 260 ZN ZN B 261 1555 1555 2.70 LINK ZN ZN B 261 O HOH B1019 1555 1555 1.89 SITE 1 AC1 5 HIS A 77 HIS A 79 HIS A 139 BYS A 250 SITE 2 AC1 5 ZN A 252 SITE 1 AC2 5 ASP A 81 CYS A 158 HIS A 197 BYS A 250 SITE 2 AC2 5 ZN A 251 SITE 1 AC3 7 LYS A 8 THR A 20 PHE A 22 PRO A 32 SITE 2 AC3 7 HIS A 34 GLU A 199 ZN A 261 SITE 1 AC4 4 HIS A 34 GLU A 199 ACT A 260 HOH A1031 SITE 1 AC5 5 HIS B 77 HIS B 79 HIS B 139 BYS B 250 SITE 2 AC5 5 ZN B 252 SITE 1 AC6 5 ASP B 81 CYS B 158 HIS B 197 BYS B 250 SITE 2 AC6 5 ZN B 251 SITE 1 AC7 6 LYS B 8 HIS B 34 GLU B 199 ZN B 261 SITE 2 AC7 6 HOH B1019 HOH B1044 SITE 1 AC8 4 HIS B 34 GLU B 199 ACT B 260 HOH B1019 SITE 1 AC9 13 TRP A 28 HIS A 77 HIS A 79 SER A 80 SITE 2 AC9 13 ASP A 81 HIS A 139 CYS A 158 LYS A 161 SITE 3 AC9 13 GLY A 166 ASN A 167 HIS A 197 ZN A 251 SITE 4 AC9 13 ZN A 252 SITE 1 BC1 15 TRP B 28 PHE B 51 HIS B 77 HIS B 79 SITE 2 BC1 15 SER B 80 ASP B 81 HIS B 139 CYS B 158 SITE 3 BC1 15 LYS B 161 GLY B 164 GLY B 166 ASN B 167 SITE 4 BC1 15 HIS B 197 ZN B 251 ZN B 252 CRYST1 71.440 43.240 64.230 90.00 100.93 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013998 0.000000 0.002703 0.00000 SCALE2 0.000000 0.023127 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015857 0.00000