HEADER HORMONE/GROWTH FACTOR 09-JUL-01 1JJQ OBSLTE 31-MAR-09 1JJQ TITLE SOLUTION STRUCTURE OF BRADYKININ-PENTA-O-GALLOYL-D- TITLE 2 GLUCOPYRANOSE COMPLEX DETERMINED BY NMR COMPND MOL_ID: 1; COMPND 2 MOLECULE: BRADYKININ; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SOURCE 4 SEQUENCE OF THE PEPTIDE IS NATURALLY FOUND IN HOMO SAPIENS SOURCE 5 (HUMAN). KEYWDS TANNIN-PROTEIN COMPLEX, HORMONE/GROWTH FACTOR COMPLEX EXPDTA SOLUTION NMR NUMMDL 13 AUTHOR S.VERGE,T.RICHARD,S.MOREAU,J.VERCAUTEREN,J.P.MONTI REVDAT 4 31-MAR-09 1JJQ 1 OBSLTE REVDAT 3 24-FEB-09 1JJQ 1 VERSN REVDAT 2 19-JUN-02 1JJQ 1 JRNL REVDAT 1 08-AUG-01 1JJQ 0 JRNL AUTH S.VERGE,T.RICHARD,S.MOREAU,A.NURICH,J.M.MERILLON, JRNL AUTH 2 J.VERCAUTEREN,J.P.MONTI JRNL TITL FIRST OBSERVATION OF SOLUTION STRUCTURES OF JRNL TITL 2 BRADYKININ-PENTA-O-GALLOYL-D-GLUCOPYRANOSE JRNL TITL 3 COMPLEXES AS DETERMINED BY NMR AND SIMULATED JRNL TITL 4 ANNEALING. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1571 89 2002 JRNL REFN ISSN 0006-3002 JRNL PMID 12049789 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : INSIGHT II 98.0 REMARK 3 AUTHORS : MSI REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JJQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-01. REMARK 100 THE RCSB ID CODE IS RCSB013853. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM BRADYKININ, 20MM PENTA-O REMARK 210 -GALLOYL-D-GLUCOPYRANOSE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : DQF-COSY, 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, GIFA 4.22, REMARK 210 INSIGHT II 98.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 13 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 10 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES AND WATER SUPPRESSION. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 1A NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 1 ARG A 1A NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 1 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 1 ARG A 9 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 2 ARG A 1A NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 2 ARG A 1A NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 2 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 2 ARG A 9 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 3 ARG A 1A NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 3 ARG A 1A NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 3 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 3 ARG A 9 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 4 ARG A 1A NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 4 ARG A 1A NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 4 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 4 ARG A 9 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 5 ARG A 1A NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 5 ARG A 1A NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 5 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 5 ARG A 9 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 6 ARG A 1A NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 6 ARG A 1A NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 6 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 7 ARG A 1A NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 7 ARG A 1A NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 7 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 7 ARG A 9 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 8 ARG A 1A NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 8 ARG A 1A NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 8 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 8 ARG A 9 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 9 ARG A 1A NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 9 ARG A 1A NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 9 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 9 ARG A 9 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 10 ARG A 1A NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 10 ARG A 1A NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 10 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 10 ARG A 9 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 11 ARG A 1A NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 11 ARG A 1A NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 11 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 11 ARG A 9 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 12 ARG A 1A NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 12 ARG A 1A NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 12 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 12 ARG A 9 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 13 ARG A 1A NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 13 ARG A 1A NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 13 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 51 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 106.40 -59.98 REMARK 500 1 PHE A 8 -31.07 -138.71 REMARK 500 3 PRO A 2 159.99 -48.46 REMARK 500 3 PHE A 8 -26.05 -145.69 REMARK 500 5 SER A 6 102.00 -53.54 REMARK 500 5 PHE A 8 -17.51 -145.74 REMARK 500 6 PHE A 8 45.54 -141.40 REMARK 500 7 PRO A 2 163.58 -48.44 REMARK 500 7 PHE A 8 27.03 -144.72 REMARK 500 9 PHE A 8 -27.21 -144.73 REMARK 500 10 PRO A 2 160.33 -48.18 REMARK 500 11 PRO A 2 162.37 -48.68 REMARK 500 12 PRO A 2 161.84 -48.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GGP A 10 DBREF 1JJQ A 1A 9 PDB 1JJQ 1JJQ 1 9 SEQRES 1 A 9 ARG PRO PRO GLY PHE SER PRO PHE ARG HET GGP A 10 99 HETNAM GGP BETA-1,2,3,4,6-PENTA-O-GALLOYL-D-GLUCOPYRANOSE FORMUL 2 GGP C41 H32 O26 SITE 1 AC1 6 PRO A 2 PRO A 3 GLY A 4 SER A 6 SITE 2 AC1 6 PHE A 8 ARG A 9 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL CONECT 153 154 158 182 220 CONECT 154 153 155 184 221 CONECT 155 154 156 208 222 CONECT 156 155 157 196 223 CONECT 157 156 158 159 224 CONECT 158 153 157 CONECT 159 157 160 CONECT 160 159 161 162 CONECT 161 160 CONECT 162 160 163 170 CONECT 163 162 164 225 CONECT 164 163 165 166 CONECT 165 164 226 CONECT 166 164 167 168 CONECT 167 166 227 CONECT 168 166 169 170 CONECT 169 168 228 CONECT 170 162 168 229 CONECT 171 172 173 183 CONECT 172 171 CONECT 173 171 174 181 CONECT 174 173 175 230 CONECT 175 174 176 177 CONECT 176 175 231 CONECT 177 175 178 179 CONECT 178 177 232 CONECT 179 177 180 181 CONECT 180 179 233 CONECT 181 173 179 234 CONECT 182 153 183 235 236 CONECT 183 171 182 CONECT 184 154 185 CONECT 185 184 186 187 CONECT 186 185 CONECT 187 185 188 195 CONECT 188 187 189 237 CONECT 189 188 190 191 CONECT 190 189 238 CONECT 191 189 192 193 CONECT 192 191 239 CONECT 193 191 194 195 CONECT 194 193 240 CONECT 195 187 193 241 CONECT 196 156 197 CONECT 197 196 198 199 CONECT 198 197 CONECT 199 197 200 207 CONECT 200 199 201 242 CONECT 201 200 202 203 CONECT 202 201 243 CONECT 203 201 204 205 CONECT 204 203 244 CONECT 205 203 206 207 CONECT 206 205 245 CONECT 207 199 205 246 CONECT 208 155 209 CONECT 209 208 210 211 CONECT 210 209 CONECT 211 209 212 219 CONECT 212 211 213 247 CONECT 213 212 214 215 CONECT 214 213 248 CONECT 215 213 216 217 CONECT 216 215 249 CONECT 217 215 218 219 CONECT 218 217 250 CONECT 219 211 217 251 CONECT 220 153 CONECT 221 154 CONECT 222 155 CONECT 223 156 CONECT 224 157 CONECT 225 163 CONECT 226 165 CONECT 227 167 CONECT 228 169 CONECT 229 170 CONECT 230 174 CONECT 231 176 CONECT 232 178 CONECT 233 180 CONECT 234 181 CONECT 235 182 CONECT 236 182 CONECT 237 188 CONECT 238 190 CONECT 239 192 CONECT 240 194 CONECT 241 195 CONECT 242 200 CONECT 243 202 CONECT 244 204 CONECT 245 206 CONECT 246 207 CONECT 247 212 CONECT 248 214 CONECT 249 216 CONECT 250 218 CONECT 251 219 MASTER 156 0 1 0 0 0 2 6 3250 13 99 1 END