HEADER ISOMERASE 12-JUL-01 1JKF TITLE HOLO 1L-MYO-INOSITOL-1-PHOSPHATE SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYO-INOSITOL-1-PHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.5.1.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ROSSMANN FOLD, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.J.STEIN,J.H.GEIGER REVDAT 3 31-JAN-18 1JKF 1 JRNL REVDAT 2 24-FEB-09 1JKF 1 VERSN REVDAT 1 10-APR-02 1JKF 0 JRNL AUTH A.J.STEIN,J.H.GEIGER JRNL TITL THE CRYSTAL STRUCTURE AND MECHANISM OF 1-L-MYO-INOSITOL- JRNL TITL 2 1-PHOSPHATE SYNTHASE JRNL REF J.BIOL.CHEM. V. 277 9484 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 11779862 JRNL DOI 10.1074/JBC.M109371200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.J.STEIN,J.H.GEIGER REMARK 1 TITL STRUCTURAL STUDIES OF MIP SYNTHASE REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 56 348 2000 REMARK 1 REFN ISSN 0907-4449 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : CNS, TERWILLIGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 57.3 REMARK 3 NUMBER OF REFLECTIONS : 80871 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 5745 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.42 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7345 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 538 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.927 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JKF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUL-01. REMARK 100 THE DEPOSITION ID IS D_1000013874. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-00 REMARK 200 TEMPERATURE (KELVIN) : 123 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794, 0.9796, 0.9464 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49388 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 500.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 1.850 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04800 REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.33800 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, SODIUM ACETATE, WATER, PH REMARK 280 4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 75.52100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.97950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 75.52100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 47.97950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER. THE TETRAMER HAS 222 REMARK 300 SYMMETRY WITH A NON-CRYSTALLOGRAPHIC 2-FOLD AXIS RELATING THE DIMER REMARK 300 IN THE ASYMMETRIC UNIT AND A CRYSTALLOGRAPHIC 2-FOLD AXIS RELATING REMARK 300 THE TWO DIMERS THAT MAKE UP THE TETRAMER. THE ASSYMMETRIC UNIT REMARK 300 OPERATIONS ARE X, Y, Z AND -X, Y, -Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 ASP A 4 REMARK 465 ASN A 5 REMARK 465 ILE A 6 REMARK 465 ALA A 7 REMARK 465 PRO A 8 REMARK 465 ILE A 9 REMARK 465 THR A 10 REMARK 465 LEU A 352 REMARK 465 GLY A 353 REMARK 465 ASN A 354 REMARK 465 ASN A 355 REMARK 465 ASP A 356 REMARK 465 GLY A 357 REMARK 465 TYR A 358 REMARK 465 ASN A 359 REMARK 465 LEU A 360 REMARK 465 SER A 361 REMARK 465 ALA A 362 REMARK 465 PRO A 363 REMARK 465 LYS A 364 REMARK 465 GLN A 365 REMARK 465 PHE A 366 REMARK 465 ARG A 367 REMARK 465 SER A 368 REMARK 465 LYS A 369 REMARK 465 GLU A 370 REMARK 465 ILE A 371 REMARK 465 SER A 372 REMARK 465 LYS A 373 REMARK 465 SER A 374 REMARK 465 SER A 375 REMARK 465 VAL A 376 REMARK 465 ILE A 377 REMARK 465 ASP A 378 REMARK 465 ASP A 379 REMARK 465 ILE A 380 REMARK 465 ILE A 381 REMARK 465 ALA A 382 REMARK 465 SER A 383 REMARK 465 ASN A 384 REMARK 465 ASP A 385 REMARK 465 ILE A 386 REMARK 465 LEU A 387 REMARK 465 TYR A 388 REMARK 465 ASN A 389 REMARK 465 ASP A 390 REMARK 465 LYS A 391 REMARK 465 LEU A 392 REMARK 465 GLY A 393 REMARK 465 LYS A 394 REMARK 465 LYS A 395 REMARK 465 VAL A 396 REMARK 465 ASP A 397 REMARK 465 HIS A 398 REMARK 465 CYS A 399 REMARK 465 ILE A 400 REMARK 465 VAL A 401 REMARK 465 ILE A 402 REMARK 465 LYS A 403 REMARK 465 TYR A 404 REMARK 465 MET A 405 REMARK 465 LYS A 406 REMARK 465 PRO A 407 REMARK 465 VAL A 408 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 GLU B 3 REMARK 465 ASP B 4 REMARK 465 ASN B 5 REMARK 465 ILE B 6 REMARK 465 ALA B 7 REMARK 465 PRO B 8 REMARK 465 ILE B 9 REMARK 465 LEU B 352 REMARK 465 GLY B 353 REMARK 465 ASN B 354 REMARK 465 ASN B 355 REMARK 465 ASP B 356 REMARK 465 GLY B 357 REMARK 465 TYR B 358 REMARK 465 ASN B 359 REMARK 465 LEU B 360 REMARK 465 SER B 361 REMARK 465 ALA B 362 REMARK 465 PRO B 363 REMARK 465 LYS B 364 REMARK 465 GLN B 365 REMARK 465 PHE B 366 REMARK 465 ARG B 367 REMARK 465 SER B 368 REMARK 465 LYS B 369 REMARK 465 GLU B 370 REMARK 465 ILE B 371 REMARK 465 SER B 372 REMARK 465 LYS B 373 REMARK 465 SER B 374 REMARK 465 SER B 375 REMARK 465 VAL B 376 REMARK 465 ILE B 377 REMARK 465 ASP B 378 REMARK 465 ASP B 379 REMARK 465 ILE B 380 REMARK 465 ILE B 381 REMARK 465 ALA B 382 REMARK 465 SER B 383 REMARK 465 ASN B 384 REMARK 465 ASP B 385 REMARK 465 ILE B 386 REMARK 465 LEU B 387 REMARK 465 TYR B 388 REMARK 465 ASN B 389 REMARK 465 ASP B 390 REMARK 465 LYS B 391 REMARK 465 LEU B 392 REMARK 465 GLY B 393 REMARK 465 LYS B 394 REMARK 465 LYS B 395 REMARK 465 VAL B 396 REMARK 465 ASP B 397 REMARK 465 HIS B 398 REMARK 465 CYS B 399 REMARK 465 ILE B 400 REMARK 465 VAL B 401 REMARK 465 ILE B 402 REMARK 465 LYS B 403 REMARK 465 TYR B 404 REMARK 465 MET B 405 REMARK 465 LYS B 406 REMARK 465 PRO B 407 REMARK 465 VAL B 408 REMARK 465 GLY B 409 REMARK 465 ASP B 410 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR A 32 O HOH A 611 1.82 REMARK 500 O PRO B 183 O HOH B 612 2.03 REMARK 500 O ALA B 245 O3D NAD B 610 2.05 REMARK 500 N ASN B 76 O2A NAD B 610 2.06 REMARK 500 O LYS A 57 O HOH A 666 2.06 REMARK 500 N VAL B 12 O HOH B 788 2.12 REMARK 500 OG SER A 420 O HOH A 729 2.13 REMARK 500 OD1 ASN A 476 O HOH A 630 2.16 REMARK 500 O PRO B 63 O HOH B 625 2.16 REMARK 500 O ASP A 17 O HOH A 713 2.16 REMARK 500 O GLU B 273 N ILE B 275 2.16 REMARK 500 CG2 VAL B 467 O HOH B 828 2.17 REMARK 500 NZ LYS B 468 O HOH B 828 2.17 REMARK 500 NH2 ARG B 429 O HOH B 786 2.18 REMARK 500 OE1 GLU A 98 O HOH A 627 2.18 REMARK 500 OE2 GLU B 454 O HOH B 654 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN A 229 O LEU B 178 3455 1.70 REMARK 500 O HOH A 696 O HOH A 696 2555 2.08 REMARK 500 OD2 ASP A 23 OD2 ASP A 23 2556 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 479 C - N - CA ANGL. DEV. = 11.4 DEGREES REMARK 500 PRO A 495 C - N - CA ANGL. DEV. = 10.1 DEGREES REMARK 500 LEU A 516 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 GLY B 318 N - CA - C ANGL. DEV. = 16.9 DEGREES REMARK 500 PRO B 466 C - N - CA ANGL. DEV. = 12.7 DEGREES REMARK 500 PRO B 521 C - N - CA ANGL. DEV. = 13.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 22 -125.75 -88.63 REMARK 500 ASN A 34 -157.27 -157.91 REMARK 500 ALA A 35 136.34 -170.95 REMARK 500 ALA A 41 73.41 -63.58 REMARK 500 SER A 42 -58.46 -177.70 REMARK 500 ARG A 44 140.71 -33.92 REMARK 500 PRO A 49 175.89 -52.71 REMARK 500 GLN A 52 103.66 179.60 REMARK 500 ASN A 91 11.29 55.81 REMARK 500 VAL A 92 84.10 -54.41 REMARK 500 ASP A 125 151.10 -42.73 REMARK 500 PHE A 130 -17.45 -47.18 REMARK 500 LEU A 133 -73.33 -51.87 REMARK 500 SER A 145 -157.96 -169.98 REMARK 500 ASP A 148 124.92 -175.96 REMARK 500 ILE A 149 14.50 -63.17 REMARK 500 ALA A 193 -171.50 168.85 REMARK 500 ASN A 204 80.80 -59.14 REMARK 500 GLU A 207 79.90 -46.82 REMARK 500 LYS A 208 -36.29 -165.51 REMARK 500 VAL A 211 -73.72 -82.79 REMARK 500 THR A 212 154.51 64.15 REMARK 500 ALA A 245 -158.98 -100.41 REMARK 500 ASN A 246 -176.74 -55.51 REMARK 500 PRO A 255 93.37 -53.00 REMARK 500 MET A 261 -79.31 -51.56 REMARK 500 GLU A 262 -43.28 -23.90 REMARK 500 GLN A 298 142.44 146.59 REMARK 500 ALA A 317 -178.41 -172.35 REMARK 500 ASP A 319 82.05 113.99 REMARK 500 ASP A 320 131.22 73.76 REMARK 500 TYR A 349 -126.97 -132.94 REMARK 500 ASN A 350 98.78 86.30 REMARK 500 SER A 411 83.99 59.91 REMARK 500 ASP A 438 -71.95 -35.41 REMARK 500 LYS A 468 76.00 -176.63 REMARK 500 GLU A 469 130.98 -36.32 REMARK 500 ASP A 470 70.30 51.77 REMARK 500 PHE A 477 131.14 -36.75 REMARK 500 PRO A 479 -56.67 -21.62 REMARK 500 LEU A 481 95.22 -51.87 REMARK 500 TYR A 486 -26.33 -39.25 REMARK 500 PRO A 491 96.91 -62.19 REMARK 500 LEU A 492 159.80 -47.31 REMARK 500 PRO A 495 -44.71 -26.95 REMARK 500 PRO A 499 157.89 -47.01 REMARK 500 ASN A 501 -169.09 -121.74 REMARK 500 LEU A 503 -51.60 -23.86 REMARK 500 GLU A 525 16.96 54.49 REMARK 500 ARG A 527 60.76 35.16 REMARK 500 REMARK 500 THIS ENTRY HAS 114 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 349 0.06 SIDE CHAIN REMARK 500 TYR B 349 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 600 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JKI RELATED DB: PDB REMARK 900 MYO-INOSITOL-1-PHOSPHATE SYNTHASE COMPLEXED WITH AN INHIBITOR, 2- REMARK 900 DEOXY-GLUCITOL-6-PHOSPHATE DBREF 1JKF A 1 533 UNP P11986 INO1_YEAST 23 555 DBREF 1JKF B 1 533 UNP P11986 INO1_YEAST 23 555 SEQRES 1 A 533 MET THR GLU ASP ASN ILE ALA PRO ILE THR SER VAL LYS SEQRES 2 A 533 VAL VAL THR ASP LYS CYS THR TYR LYS ASP ASN GLU LEU SEQRES 3 A 533 LEU THR LYS TYR SER TYR GLU ASN ALA VAL VAL THR LYS SEQRES 4 A 533 THR ALA SER GLY ARG PHE ASP VAL THR PRO THR VAL GLN SEQRES 5 A 533 ASP TYR VAL PHE LYS LEU ASP LEU LYS LYS PRO GLU LYS SEQRES 6 A 533 LEU GLY ILE MET LEU ILE GLY LEU GLY GLY ASN ASN GLY SEQRES 7 A 533 SER THR LEU VAL ALA SER VAL LEU ALA ASN LYS HIS ASN SEQRES 8 A 533 VAL GLU PHE GLN THR LYS GLU GLY VAL LYS GLN PRO ASN SEQRES 9 A 533 TYR PHE GLY SER MET THR GLN CYS SER THR LEU LYS LEU SEQRES 10 A 533 GLY ILE ASP ALA GLU GLY ASN ASP VAL TYR ALA PRO PHE SEQRES 11 A 533 ASN SER LEU LEU PRO MET VAL SER PRO ASN ASP PHE VAL SEQRES 12 A 533 VAL SER GLY TRP ASP ILE ASN ASN ALA ASP LEU TYR GLU SEQRES 13 A 533 ALA MET GLN ARG SER GLN VAL LEU GLU TYR ASP LEU GLN SEQRES 14 A 533 GLN ARG LEU LYS ALA LYS MET SER LEU VAL LYS PRO LEU SEQRES 15 A 533 PRO SER ILE TYR TYR PRO ASP PHE ILE ALA ALA ASN GLN SEQRES 16 A 533 ASP GLU ARG ALA ASN ASN CYS ILE ASN LEU ASP GLU LYS SEQRES 17 A 533 GLY ASN VAL THR THR ARG GLY LYS TRP THR HIS LEU GLN SEQRES 18 A 533 ARG ILE ARG ARG ASP ILE GLN ASN PHE LYS GLU GLU ASN SEQRES 19 A 533 ALA LEU ASP LYS VAL ILE VAL LEU TRP THR ALA ASN THR SEQRES 20 A 533 GLU ARG TYR VAL GLU VAL SER PRO GLY VAL ASN ASP THR SEQRES 21 A 533 MET GLU ASN LEU LEU GLN SER ILE LYS ASN ASP HIS GLU SEQRES 22 A 533 GLU ILE ALA PRO SER THR ILE PHE ALA ALA ALA SER ILE SEQRES 23 A 533 LEU GLU GLY VAL PRO TYR ILE ASN GLY SER PRO GLN ASN SEQRES 24 A 533 THR PHE VAL PRO GLY LEU VAL GLN LEU ALA GLU HIS GLU SEQRES 25 A 533 GLY THR PHE ILE ALA GLY ASP ASP LEU LYS SER GLY GLN SEQRES 26 A 533 THR LYS LEU LYS SER VAL LEU ALA GLN PHE LEU VAL ASP SEQRES 27 A 533 ALA GLY ILE LYS PRO VAL SER ILE ALA SER TYR ASN HIS SEQRES 28 A 533 LEU GLY ASN ASN ASP GLY TYR ASN LEU SER ALA PRO LYS SEQRES 29 A 533 GLN PHE ARG SER LYS GLU ILE SER LYS SER SER VAL ILE SEQRES 30 A 533 ASP ASP ILE ILE ALA SER ASN ASP ILE LEU TYR ASN ASP SEQRES 31 A 533 LYS LEU GLY LYS LYS VAL ASP HIS CYS ILE VAL ILE LYS SEQRES 32 A 533 TYR MET LYS PRO VAL GLY ASP SER LYS VAL ALA MET ASP SEQRES 33 A 533 GLU TYR TYR SER GLU LEU MET LEU GLY GLY HIS ASN ARG SEQRES 34 A 533 ILE SER ILE HIS ASN VAL CYS GLU ASP SER LEU LEU ALA SEQRES 35 A 533 THR PRO LEU ILE ILE ASP LEU LEU VAL MET THR GLU PHE SEQRES 36 A 533 CYS THR ARG VAL SER TYR LYS LYS VAL ASP PRO VAL LYS SEQRES 37 A 533 GLU ASP ALA GLY LYS PHE GLU ASN PHE TYR PRO VAL LEU SEQRES 38 A 533 THR PHE LEU SER TYR TRP LEU LYS ALA PRO LEU THR ARG SEQRES 39 A 533 PRO GLY PHE HIS PRO VAL ASN GLY LEU ASN LYS GLN ARG SEQRES 40 A 533 THR ALA LEU GLU ASN PHE LEU ARG LEU LEU ILE GLY LEU SEQRES 41 A 533 PRO SER GLN ASN GLU LEU ARG PHE GLU GLU ARG LEU LEU SEQRES 1 B 533 MET THR GLU ASP ASN ILE ALA PRO ILE THR SER VAL LYS SEQRES 2 B 533 VAL VAL THR ASP LYS CYS THR TYR LYS ASP ASN GLU LEU SEQRES 3 B 533 LEU THR LYS TYR SER TYR GLU ASN ALA VAL VAL THR LYS SEQRES 4 B 533 THR ALA SER GLY ARG PHE ASP VAL THR PRO THR VAL GLN SEQRES 5 B 533 ASP TYR VAL PHE LYS LEU ASP LEU LYS LYS PRO GLU LYS SEQRES 6 B 533 LEU GLY ILE MET LEU ILE GLY LEU GLY GLY ASN ASN GLY SEQRES 7 B 533 SER THR LEU VAL ALA SER VAL LEU ALA ASN LYS HIS ASN SEQRES 8 B 533 VAL GLU PHE GLN THR LYS GLU GLY VAL LYS GLN PRO ASN SEQRES 9 B 533 TYR PHE GLY SER MET THR GLN CYS SER THR LEU LYS LEU SEQRES 10 B 533 GLY ILE ASP ALA GLU GLY ASN ASP VAL TYR ALA PRO PHE SEQRES 11 B 533 ASN SER LEU LEU PRO MET VAL SER PRO ASN ASP PHE VAL SEQRES 12 B 533 VAL SER GLY TRP ASP ILE ASN ASN ALA ASP LEU TYR GLU SEQRES 13 B 533 ALA MET GLN ARG SER GLN VAL LEU GLU TYR ASP LEU GLN SEQRES 14 B 533 GLN ARG LEU LYS ALA LYS MET SER LEU VAL LYS PRO LEU SEQRES 15 B 533 PRO SER ILE TYR TYR PRO ASP PHE ILE ALA ALA ASN GLN SEQRES 16 B 533 ASP GLU ARG ALA ASN ASN CYS ILE ASN LEU ASP GLU LYS SEQRES 17 B 533 GLY ASN VAL THR THR ARG GLY LYS TRP THR HIS LEU GLN SEQRES 18 B 533 ARG ILE ARG ARG ASP ILE GLN ASN PHE LYS GLU GLU ASN SEQRES 19 B 533 ALA LEU ASP LYS VAL ILE VAL LEU TRP THR ALA ASN THR SEQRES 20 B 533 GLU ARG TYR VAL GLU VAL SER PRO GLY VAL ASN ASP THR SEQRES 21 B 533 MET GLU ASN LEU LEU GLN SER ILE LYS ASN ASP HIS GLU SEQRES 22 B 533 GLU ILE ALA PRO SER THR ILE PHE ALA ALA ALA SER ILE SEQRES 23 B 533 LEU GLU GLY VAL PRO TYR ILE ASN GLY SER PRO GLN ASN SEQRES 24 B 533 THR PHE VAL PRO GLY LEU VAL GLN LEU ALA GLU HIS GLU SEQRES 25 B 533 GLY THR PHE ILE ALA GLY ASP ASP LEU LYS SER GLY GLN SEQRES 26 B 533 THR LYS LEU LYS SER VAL LEU ALA GLN PHE LEU VAL ASP SEQRES 27 B 533 ALA GLY ILE LYS PRO VAL SER ILE ALA SER TYR ASN HIS SEQRES 28 B 533 LEU GLY ASN ASN ASP GLY TYR ASN LEU SER ALA PRO LYS SEQRES 29 B 533 GLN PHE ARG SER LYS GLU ILE SER LYS SER SER VAL ILE SEQRES 30 B 533 ASP ASP ILE ILE ALA SER ASN ASP ILE LEU TYR ASN ASP SEQRES 31 B 533 LYS LEU GLY LYS LYS VAL ASP HIS CYS ILE VAL ILE LYS SEQRES 32 B 533 TYR MET LYS PRO VAL GLY ASP SER LYS VAL ALA MET ASP SEQRES 33 B 533 GLU TYR TYR SER GLU LEU MET LEU GLY GLY HIS ASN ARG SEQRES 34 B 533 ILE SER ILE HIS ASN VAL CYS GLU ASP SER LEU LEU ALA SEQRES 35 B 533 THR PRO LEU ILE ILE ASP LEU LEU VAL MET THR GLU PHE SEQRES 36 B 533 CYS THR ARG VAL SER TYR LYS LYS VAL ASP PRO VAL LYS SEQRES 37 B 533 GLU ASP ALA GLY LYS PHE GLU ASN PHE TYR PRO VAL LEU SEQRES 38 B 533 THR PHE LEU SER TYR TRP LEU LYS ALA PRO LEU THR ARG SEQRES 39 B 533 PRO GLY PHE HIS PRO VAL ASN GLY LEU ASN LYS GLN ARG SEQRES 40 B 533 THR ALA LEU GLU ASN PHE LEU ARG LEU LEU ILE GLY LEU SEQRES 41 B 533 PRO SER GLN ASN GLU LEU ARG PHE GLU GLU ARG LEU LEU HET NAD A 600 44 HET NAD B 610 44 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 5 HOH *538(H2 O) HELIX 1 1 GLY A 75 HIS A 90 1 16 HELIX 2 2 SER A 108 SER A 113 1 6 HELIX 3 3 SER A 138 ASN A 140 5 3 HELIX 4 4 ASP A 153 GLN A 162 1 10 HELIX 5 5 GLU A 165 LEU A 172 1 8 HELIX 6 6 LEU A 172 SER A 177 1 6 HELIX 7 7 TYR A 187 ASP A 189 5 3 HELIX 8 8 GLY A 215 ASN A 234 1 20 HELIX 9 9 THR A 260 ASP A 271 1 12 HELIX 10 10 ALA A 276 GLU A 288 1 13 HELIX 11 11 VAL A 302 GLY A 313 1 12 HELIX 12 12 SER A 323 ALA A 339 1 17 HELIX 13 13 ASP A 438 THR A 457 1 20 HELIX 14 14 LEU A 481 TRP A 487 5 7 HELIX 15 15 GLY A 502 ILE A 518 1 17 HELIX 16 16 ARG A 527 LEU A 532 1 6 HELIX 17 17 GLY B 75 HIS B 90 1 16 HELIX 18 18 SER B 108 SER B 113 1 6 HELIX 19 19 SER B 138 ASN B 140 5 3 HELIX 20 20 ASP B 153 SER B 161 1 9 HELIX 21 21 GLU B 165 LEU B 172 1 8 HELIX 22 22 LEU B 172 LEU B 178 1 7 HELIX 23 23 TYR B 187 ILE B 191 5 5 HELIX 24 24 GLY B 215 ALA B 235 1 21 HELIX 25 25 GLU B 262 ASN B 270 1 9 HELIX 26 26 ALA B 276 LEU B 287 1 12 HELIX 27 27 VAL B 302 HIS B 311 1 10 HELIX 28 28 GLU B 312 THR B 314 5 3 HELIX 29 29 GLN B 325 ASP B 338 1 14 HELIX 30 30 MET B 423 GLY B 425 5 3 HELIX 31 31 ASP B 438 CYS B 456 1 19 HELIX 32 32 PHE B 483 TRP B 487 5 5 HELIX 33 33 GLY B 502 LEU B 517 1 16 HELIX 34 34 ARG B 527 LEU B 532 1 6 SHEET 1 A 3 VAL A 12 VAL A 14 0 SHEET 2 A 3 PHE B 45 THR B 50 1 O PHE B 45 N LYS A 13 SHEET 3 A 3 ASN B 34 VAL B 37 -1 N ASN B 34 O THR B 50 SHEET 1 B 5 CYS A 19 TYR A 21 0 SHEET 2 B 5 GLU A 25 SER A 31 -1 O LEU A 27 N THR A 20 SHEET 3 B 5 ASP A 53 ASP A 59 -1 O TYR A 54 N TYR A 30 SHEET 4 B 5 VAL A 459 VAL A 464 -1 O SER A 460 N LYS A 57 SHEET 5 B 5 GLU A 475 ASN A 476 -1 N GLU A 475 O TYR A 461 SHEET 1 C 3 ASN A 34 LYS A 39 0 SHEET 2 C 3 PHE A 45 THR A 50 -1 N ASP A 46 O THR A 38 SHEET 3 C 3 VAL B 12 VAL B 14 1 N LYS B 13 O PHE A 45 SHEET 1 D 5 PHE A 142 TRP A 147 0 SHEET 2 D 5 LEU A 66 ILE A 71 1 O LEU A 66 N VAL A 143 SHEET 3 D 5 VAL A 239 TRP A 243 1 O ILE A 240 N MET A 69 SHEET 4 D 5 TYR A 292 ASN A 294 1 O ILE A 293 N TRP A 243 SHEET 5 D 5 ILE A 316 GLY A 318 1 O ALA A 317 N ASN A 294 SHEET 1 E 2 PHE A 94 THR A 96 0 SHEET 2 E 2 GLY A 99 LYS A 101 -1 N GLY A 99 O THR A 96 SHEET 1 F 2 THR A 114 GLY A 118 0 SHEET 2 F 2 VAL A 126 PRO A 129 -1 O VAL A 126 N LEU A 117 SHEET 1 G 2 ILE A 191 ALA A 193 0 SHEET 2 G 2 THR A 247 GLU A 248 -1 O THR A 247 N ALA A 192 SHEET 1 H 6 LYS A 342 ALA A 347 0 SHEET 2 H 6 LYS A 412 GLU A 421 -1 O GLU A 417 N ALA A 347 SHEET 3 H 6 HIS A 427 CYS A 436 -1 O ASN A 428 N SER A 420 SHEET 4 H 6 HIS B 427 CYS B 436 -1 N ARG B 429 O VAL A 435 SHEET 5 H 6 LYS B 412 GLU B 421 -1 O LYS B 412 N CYS B 436 SHEET 6 H 6 LYS B 342 SER B 348 -1 O LYS B 342 N GLU B 421 SHEET 1 I 5 CYS B 19 TYR B 21 0 SHEET 2 I 5 LEU B 26 SER B 31 -1 N LEU B 27 O THR B 20 SHEET 3 I 5 ASP B 53 LEU B 58 -1 O TYR B 54 N TYR B 30 SHEET 4 I 5 VAL B 459 VAL B 464 -1 O SER B 460 N LYS B 57 SHEET 5 I 5 GLU B 475 ASN B 476 -1 O GLU B 475 N TYR B 461 SHEET 1 J 5 PHE B 142 TRP B 147 0 SHEET 2 J 5 LEU B 66 ILE B 71 1 O LEU B 66 N VAL B 143 SHEET 3 J 5 VAL B 239 TRP B 243 1 N ILE B 240 O GLY B 67 SHEET 4 J 5 TYR B 292 ASN B 294 1 N ILE B 293 O VAL B 241 SHEET 5 J 5 ILE B 316 ALA B 317 1 O ALA B 317 N ASN B 294 SHEET 1 K 2 PHE B 94 THR B 96 0 SHEET 2 K 2 GLY B 99 LYS B 101 -1 N GLY B 99 O THR B 96 SHEET 1 L 2 THR B 114 GLY B 118 0 SHEET 2 L 2 VAL B 126 PRO B 129 -1 N VAL B 126 O GLY B 118 LINK OD1 ASN A 246 N7A NAD A 600 1555 1555 1.94 SITE 1 AC1 25 GLY B 72 GLY B 74 GLY B 75 ASN B 76 SITE 2 AC1 25 ASN B 77 ASP B 148 ILE B 149 SER B 184 SITE 3 AC1 25 ASN B 194 GLN B 195 ASP B 196 GLU B 197 SITE 4 AC1 25 THR B 244 ALA B 245 ASN B 246 THR B 247 SITE 5 AC1 25 SER B 296 PRO B 297 ASP B 320 LEU B 321 SITE 6 AC1 25 LYS B 322 SER B 323 ALA B 442 HOH B 702 SITE 7 AC1 25 HOH B 834 SITE 1 AC2 24 ILE A 71 GLY A 72 GLY A 74 GLY A 75 SITE 2 AC2 24 ASN A 76 ASN A 77 ASP A 148 ILE A 149 SITE 3 AC2 24 SER A 184 ASN A 194 ASP A 196 GLU A 197 SITE 4 AC2 24 TRP A 243 THR A 244 ALA A 245 ASN A 246 SITE 5 AC2 24 THR A 247 SER A 296 LEU A 321 LYS A 322 SITE 6 AC2 24 SER A 323 GLY A 409 ASP A 438 HOH A 613 CRYST1 151.042 95.959 121.291 90.00 126.04 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006621 0.000000 0.004817 0.00000 SCALE2 0.000000 0.010421 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010196 0.00000