HEADER SERINE HYDROLASE 04-FEB-98 1JKM TITLE BREFELDIN A ESTERASE, A BACTERIAL HOMOLOGUE OF HUMAN HORMONE SENSITIVE TITLE 2 LIPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BREFELDIN A ESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 CELL_LINE: 293; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: 293; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACTERIAL KEYWDS SERINE HYDROLASE, DEGRADATION OF BREFELDIN A, ALPHA/BETA HYDROLASE KEYWDS 2 FAMILY EXPDTA X-RAY DIFFRACTION AUTHOR Y.WEI,A.J.CONTRERAS,P.SHEFFIELD,T.OSTERLUND,U.DEREWENDA,U.O.MATERN, AUTHOR 2 Z.S.DEREWENDA REVDAT 5 07-FEB-24 1JKM 1 REMARK SEQADV REVDAT 4 24-FEB-09 1JKM 1 VERSN REVDAT 3 01-APR-03 1JKM 1 JRNL REVDAT 2 02-JUN-99 1JKM 1 JRNL AUTHOR REVDAT 1 16-FEB-99 1JKM 0 JRNL AUTH Y.WEI,J.A.CONTRERAS,P.SHEFFIELD,T.OSTERLUND,U.DEREWENDA, JRNL AUTH 2 R.E.KNEUSEL,U.MATERN,C.HOLM,Z.S.DEREWENDA JRNL TITL CRYSTAL STRUCTURE OF BREFELDIN A ESTERASE, A BACTERIAL JRNL TITL 2 HOMOLOG OF THE MAMMALIAN HORMONE-SENSITIVE LIPASE. JRNL REF NAT.STRUCT.BIOL. V. 6 340 1999 JRNL REFN ISSN 1072-8368 JRNL PMID 10201402 JRNL DOI 10.1038/7576 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELX-90 REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.8 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.170 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5416 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 531 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 ANGLE DISTANCES (A) : NULL REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : NULL REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JKM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000174338. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 295 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 20 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X31 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XENGEN, DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62664 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.0 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10800 REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SHELX-90 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 70.35000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.30000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 70.35000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.30000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 109.51130 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 75.29618 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 10 REMARK 465 THR A 11 REMARK 465 PRO A 12 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD ARG A 217 CA ALA B 48 2656 0.12 REMARK 500 NH1 ARG A 295 C VAL B 337 2656 0.17 REMARK 500 CA GLY A 296 CE1 PHE B 259 2656 0.34 REMARK 500 CB HIS B 346 O HOH B 542 2656 0.36 REMARK 500 O PHE A 288 NH1 ARG B 15 2656 0.37 REMARK 500 CD1 LEU A 321 CB ASP B 43 2656 0.37 REMARK 500 N GLU B 261 O HOH A 649 2656 0.40 REMARK 500 CA ALA B 215 CA ARG B 218 2655 0.41 REMARK 500 CB ASP B 81 CA PRO B 83 2656 0.42 REMARK 500 N PHE A 300 C ALA B 38 2656 0.43 REMARK 500 N ASP B 81 CG PRO B 83 2656 0.46 REMARK 500 C LEU A 297 CD1 LEU B 42 2656 0.48 REMARK 500 CG2 VAL A 328 C VAL B 34 2656 0.51 REMARK 500 OD2 ASP B 26 O HOH A 642 2656 0.52 REMARK 500 CG2 VAL A 326 CD2 LEU B 37 2656 0.53 REMARK 500 O ALA A 322 CG MET B 33 2656 0.53 REMARK 500 CG PRO B 27 O HOH A 635 2656 0.57 REMARK 500 CA ALA A 324 CG1 VAL B 337 2656 0.58 REMARK 500 OD1 ASP A 292 CD PRO B 309 2656 0.58 REMARK 500 CA ASP A 327 CA ALA B 36 2656 0.59 REMARK 500 OE2 GLU B 35 N ALA B 351 2656 0.59 REMARK 500 O TYR A 287 O SER B 20 2656 0.60 REMARK 500 CA ARG A 295 CB PHE B 259 2656 0.60 REMARK 500 CE1 PHE A 300 C GLY B 41 2656 0.60 REMARK 500 CA GLU A 291 CG TYR B 258 2656 0.60 REMARK 500 O ALA A 324 CG2 VAL B 337 2656 0.62 REMARK 500 CB GLU A 293 CA GLY B 257 2656 0.63 REMARK 500 CD1 PHE B 344 O HOH A 564 2656 0.65 REMARK 500 N VAL A 328 C GLU B 35 2656 0.68 REMARK 500 CD1 LEU A 213 O VAL B 45 2656 0.70 REMARK 500 NH1 ARG A 320 N GLY B 22 2656 0.71 REMARK 500 NE ARG B 218 N LEU B 221 2655 0.72 REMARK 500 N ARG A 320 O PRO B 23 2656 0.74 REMARK 500 N ASP A 327 C ALA B 36 2656 0.75 REMARK 500 C ARG A 295 CG PHE B 259 2656 0.76 REMARK 500 CD1 PHE A 317 O HOH B 421 2656 0.77 REMARK 500 O TRP B 347 O TRP B 347 2656 0.77 REMARK 500 CA ASN B 255 O HOH A 469 2656 0.78 REMARK 500 N GLY A 296 CD1 PHE B 259 2656 0.80 REMARK 500 N GLY A 296 CG PHE B 259 2656 0.82 REMARK 500 O ALA A 316 N THR B 25 2656 0.82 REMARK 500 CA PRO B 27 O HOH A 602 2656 0.83 REMARK 500 C ALA A 316 C ARG B 24 2656 0.86 REMARK 500 CA PRO B 31 O HOH A 421 2656 0.86 REMARK 500 CB ARG A 319 O HOH B 426 2656 0.86 REMARK 500 C PHE B 29 O HOH A 393 2656 0.87 REMARK 500 CA PRO A 298 CB PHE B 40 2656 0.87 REMARK 500 CG1 VAL A 326 CA LEU B 37 2656 0.87 REMARK 500 CZ ARG A 320 N GLY B 22 2656 0.88 REMARK 500 N SER B 21 O HOH A 519 2656 0.88 REMARK 500 REMARK 500 THIS ENTRY HAS 800 SYMMETRY CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 15 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 24 CD - NE - CZ ANGL. DEV. = 10.5 DEGREES REMARK 500 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 24 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 TYR A 75 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 TYR A 75 CB - CG - CD1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 110 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 110 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 LEU A 121 CA - CB - CG ANGL. DEV. = 23.0 DEGREES REMARK 500 THR A 133 N - CA - CB ANGL. DEV. = -12.9 DEGREES REMARK 500 ARG A 137 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 137 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 140 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 220 CD - NE - CZ ANGL. DEV. = 16.1 DEGREES REMARK 500 ARG A 220 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 TYR A 233 CA - CB - CG ANGL. DEV. = 11.6 DEGREES REMARK 500 ARG A 244 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 TYR A 272 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ASP A 281 CB - CG - OD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 VAL A 304 N - CA - CB ANGL. DEV. = -17.5 DEGREES REMARK 500 ARG A 319 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 323 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 VAL A 328 CB - CA - C ANGL. DEV. = -17.6 DEGREES REMARK 500 ARG A 331 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 345 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 366 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 15 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 110 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 137 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG B 141 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 HIS B 167 CA - CB - CG ANGL. DEV. = 12.5 DEGREES REMARK 500 ARG B 217 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 217 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 245 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 TYR B 272 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 TYR B 272 CD1 - CE1 - CZ ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG B 311 NE - CZ - NH1 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG B 311 NE - CZ - NH2 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG B 319 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 VAL B 328 CB - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 VAL B 328 CG1 - CB - CG2 ANGL. DEV. = 10.4 DEGREES REMARK 500 ASP B 341 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG B 357 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 129 16.72 54.04 REMARK 500 THR A 130 -35.95 -132.63 REMARK 500 LEU A 132 140.07 81.91 REMARK 500 SER A 202 -114.89 69.05 REMARK 500 ILE A 231 58.58 31.31 REMARK 500 PHE A 259 -65.72 77.48 REMARK 500 LEU A 307 35.51 -97.13 REMARK 500 ALA A 324 2.58 -69.43 REMARK 500 SER B 21 131.07 -38.44 REMARK 500 LEU B 80 -35.99 -130.67 REMARK 500 THR B 130 -42.15 -133.44 REMARK 500 LEU B 132 131.84 93.26 REMARK 500 SER B 202 -119.44 64.15 REMARK 500 ILE B 231 57.69 29.65 REMARK 500 PHE B 259 -59.60 69.24 REMARK 500 PRO B 286 -3.94 -58.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE B 300 VAL B 301 148.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 17 -10.20 REMARK 500 SER A 235 10.89 REMARK 500 LEU A 294 -12.03 REMARK 500 GLY B 200 -10.01 REMARK 500 ASP B 225 -16.50 REMARK 500 PRO B 286 -13.15 REMARK 500 REMARK 500 REMARK: NULL DBREF 1JKM A 13 370 GB 3025874 AAC12774 13 370 DBREF 1JKM B 10 370 GB 3025874 AAC12774 10 370 SEQADV 1JKM ALA A 44 GB 3025874 GLU 44 CONFLICT SEQADV 1JKM ALA B 44 GB 3025874 GLU 44 CONFLICT SEQRES 1 A 361 TYR THR PRO PRO GLY ARG LEU GLY ASP GLU SER SER GLY SEQRES 2 A 361 PRO ARG THR ASP PRO ARG PHE SER PRO ALA MET VAL GLU SEQRES 3 A 361 ALA LEU ALA THR PHE GLY LEU ASP ALA VAL ALA ALA ALA SEQRES 4 A 361 PRO PRO VAL SER ALA SER ASP ASP LEU PRO THR VAL LEU SEQRES 5 A 361 ALA ALA VAL GLY ALA SER HIS ASP GLY PHE GLN ALA VAL SEQRES 6 A 361 TYR ASP SER ILE ALA LEU ASP LEU PRO THR ASP ARG ASP SEQRES 7 A 361 ASP VAL GLU THR SER THR GLU THR ILE LEU GLY VAL ASP SEQRES 8 A 361 GLY ASN GLU ILE THR LEU HIS VAL PHE ARG PRO ALA GLY SEQRES 9 A 361 VAL GLU GLY VAL LEU PRO GLY LEU VAL TYR THR HIS GLY SEQRES 10 A 361 GLY GLY MET THR ILE LEU THR THR ASP ASN ARG VAL HIS SEQRES 11 A 361 ARG ARG TRP CYS THR ASP LEU ALA ALA ALA GLY SER VAL SEQRES 12 A 361 VAL VAL MET VAL ASP PHE ARG ASN ALA TRP THR ALA GLU SEQRES 13 A 361 GLY HIS HIS PRO PHE PRO SER GLY VAL GLU ASP CYS LEU SEQRES 14 A 361 ALA ALA VAL LEU TRP VAL ASP GLU HIS ARG GLU SER LEU SEQRES 15 A 361 GLY LEU SER GLY VAL VAL VAL GLN GLY GLU SER GLY GLY SEQRES 16 A 361 GLY ASN LEU ALA ILE ALA THR THR LEU LEU ALA LYS ARG SEQRES 17 A 361 ARG GLY ARG LEU ASP ALA ILE ASP GLY VAL TYR ALA SER SEQRES 18 A 361 ILE PRO TYR ILE SER GLY GLY TYR ALA TRP ASP HIS GLU SEQRES 19 A 361 ARG ARG LEU THR GLU LEU PRO SER LEU VAL GLU ASN ASP SEQRES 20 A 361 GLY TYR PHE ILE GLU ASN GLY GLY MET ALA LEU LEU VAL SEQRES 21 A 361 ARG ALA TYR ASP PRO THR GLY GLU HIS ALA GLU ASP PRO SEQRES 22 A 361 ILE ALA TRP PRO TYR PHE ALA SER GLU ASP GLU LEU ARG SEQRES 23 A 361 GLY LEU PRO PRO PHE VAL VAL ALA VAL ASN GLU LEU ASP SEQRES 24 A 361 PRO LEU ARG ASP GLU GLY ILE ALA PHE ALA ARG ARG LEU SEQRES 25 A 361 ALA ARG ALA GLY VAL ASP VAL ALA ALA ARG VAL ASN ILE SEQRES 26 A 361 GLY LEU VAL HIS GLY ALA ASP VAL ILE PHE ARG HIS TRP SEQRES 27 A 361 LEU PRO ALA ALA LEU GLU SER THR VAL ARG ASP VAL ALA SEQRES 28 A 361 GLY PHE ALA ALA ASP ARG ALA ARG LEU ARG SEQRES 1 B 361 TYR THR PRO PRO GLY ARG LEU GLY ASP GLU SER SER GLY SEQRES 2 B 361 PRO ARG THR ASP PRO ARG PHE SER PRO ALA MET VAL GLU SEQRES 3 B 361 ALA LEU ALA THR PHE GLY LEU ASP ALA VAL ALA ALA ALA SEQRES 4 B 361 PRO PRO VAL SER ALA SER ASP ASP LEU PRO THR VAL LEU SEQRES 5 B 361 ALA ALA VAL GLY ALA SER HIS ASP GLY PHE GLN ALA VAL SEQRES 6 B 361 TYR ASP SER ILE ALA LEU ASP LEU PRO THR ASP ARG ASP SEQRES 7 B 361 ASP VAL GLU THR SER THR GLU THR ILE LEU GLY VAL ASP SEQRES 8 B 361 GLY ASN GLU ILE THR LEU HIS VAL PHE ARG PRO ALA GLY SEQRES 9 B 361 VAL GLU GLY VAL LEU PRO GLY LEU VAL TYR THR HIS GLY SEQRES 10 B 361 GLY GLY MET THR ILE LEU THR THR ASP ASN ARG VAL HIS SEQRES 11 B 361 ARG ARG TRP CYS THR ASP LEU ALA ALA ALA GLY SER VAL SEQRES 12 B 361 VAL VAL MET VAL ASP PHE ARG ASN ALA TRP THR ALA GLU SEQRES 13 B 361 GLY HIS HIS PRO PHE PRO SER GLY VAL GLU ASP CYS LEU SEQRES 14 B 361 ALA ALA VAL LEU TRP VAL ASP GLU HIS ARG GLU SER LEU SEQRES 15 B 361 GLY LEU SER GLY VAL VAL VAL GLN GLY GLU SER GLY GLY SEQRES 16 B 361 GLY ASN LEU ALA ILE ALA THR THR LEU LEU ALA LYS ARG SEQRES 17 B 361 ARG GLY ARG LEU ASP ALA ILE ASP GLY VAL TYR ALA SER SEQRES 18 B 361 ILE PRO TYR ILE SER GLY GLY TYR ALA TRP ASP HIS GLU SEQRES 19 B 361 ARG ARG LEU THR GLU LEU PRO SER LEU VAL GLU ASN ASP SEQRES 20 B 361 GLY TYR PHE ILE GLU ASN GLY GLY MET ALA LEU LEU VAL SEQRES 21 B 361 ARG ALA TYR ASP PRO THR GLY GLU HIS ALA GLU ASP PRO SEQRES 22 B 361 ILE ALA TRP PRO TYR PHE ALA SER GLU ASP GLU LEU ARG SEQRES 23 B 361 GLY LEU PRO PRO PHE VAL VAL ALA VAL ASN GLU LEU ASP SEQRES 24 B 361 PRO LEU ARG ASP GLU GLY ILE ALA PHE ALA ARG ARG LEU SEQRES 25 B 361 ALA ARG ALA GLY VAL ASP VAL ALA ALA ARG VAL ASN ILE SEQRES 26 B 361 GLY LEU VAL HIS GLY ALA ASP VAL ILE PHE ARG HIS TRP SEQRES 27 B 361 LEU PRO ALA ALA LEU GLU SER THR VAL ARG ASP VAL ALA SEQRES 28 B 361 GLY PHE ALA ALA ASP ARG ALA ARG LEU ARG FORMUL 3 HOH *531(H2 O) HELIX 1 1 GLY A 14 GLY A 17 1 4 HELIX 2 2 PRO A 31 PHE A 40 1 10 HELIX 3 3 LEU A 57 SER A 77 1 21 HELIX 4 4 ARG A 137 ALA A 148 1 12 HELIX 5 5 SER A 172 LEU A 191 1 20 HELIX 6 6 SER A 202 ARG A 217 5 16 HELIX 7 7 LEU A 221 ALA A 223 5 3 HELIX 8 8 HIS A 242 GLU A 248 1 7 HELIX 9 9 PRO A 250 GLU A 254 5 5 HELIX 10 10 ASN A 262 TYR A 272 1 11 HELIX 11 11 PRO A 286 PHE A 288 5 3 HELIX 12 12 GLU A 291 LEU A 294 1 4 HELIX 13 13 PRO A 309 ARG A 323 5 15 HELIX 14 14 ALA A 340 ILE A 343 1 4 HELIX 15 15 ARG A 345 TRP A 347 5 3 HELIX 16 16 PRO A 349 ARG A 368 1 20 HELIX 17 17 GLY B 14 GLY B 17 1 4 HELIX 18 18 PRO B 31 PHE B 40 1 10 HELIX 19 19 LEU B 57 SER B 77 1 21 HELIX 20 20 ARG B 137 ALA B 148 1 12 HELIX 21 21 SER B 172 GLU B 186 1 15 HELIX 22 22 ARG B 188 LEU B 191 1 4 HELIX 23 23 SER B 202 ARG B 217 5 16 HELIX 24 24 LEU B 221 ALA B 223 5 3 HELIX 25 25 HIS B 242 GLU B 248 1 7 HELIX 26 26 PRO B 250 GLU B 254 5 5 HELIX 27 27 ASN B 262 TYR B 272 1 11 HELIX 28 28 PRO B 286 PHE B 288 5 3 HELIX 29 29 GLU B 291 LEU B 294 1 4 HELIX 30 30 PRO B 309 ARG B 323 5 15 HELIX 31 31 ALA B 340 ILE B 343 1 4 HELIX 32 32 ARG B 345 TRP B 347 5 3 HELIX 33 33 PRO B 349 ARG B 368 1 20 SHEET 1 A 8 VAL A 89 LEU A 97 0 SHEET 2 A 8 GLU A 103 PRO A 111 -1 N ARG A 110 O GLU A 90 SHEET 3 A 8 VAL A 152 ASP A 157 -1 N ASP A 157 O THR A 105 SHEET 4 A 8 LEU A 118 THR A 124 1 N LEU A 121 O VAL A 152 SHEET 5 A 8 LEU A 193 GLU A 201 1 N SER A 194 O LEU A 118 SHEET 6 A 8 GLY A 226 SER A 230 1 N GLY A 226 O VAL A 198 SHEET 7 A 8 PRO A 299 ASN A 305 1 N PRO A 299 O VAL A 227 SHEET 8 A 8 VAL A 328 ASN A 333 1 N ALA A 329 O PHE A 300 SHEET 1 B 8 VAL B 89 LEU B 97 0 SHEET 2 B 8 GLU B 103 PRO B 111 -1 N ARG B 110 O GLU B 90 SHEET 3 B 8 SER B 151 VAL B 156 -1 N MET B 155 O HIS B 107 SHEET 4 B 8 LEU B 118 THR B 124 1 N PRO B 119 O VAL B 152 SHEET 5 B 8 LEU B 193 GLU B 201 1 N SER B 194 O LEU B 118 SHEET 6 B 8 GLY B 226 SER B 230 1 N GLY B 226 O VAL B 198 SHEET 7 B 8 PRO B 299 ASN B 305 1 N PRO B 299 O VAL B 227 SHEET 8 B 8 VAL B 328 ASN B 333 1 N ALA B 329 O PHE B 300 CISPEP 1 PHE A 170 PRO A 171 0 7.03 CISPEP 2 PHE B 170 PRO B 171 0 13.08 CRYST1 140.700 82.600 81.500 90.00 112.50 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007107 0.000000 0.002944 0.00000 SCALE2 0.000000 0.012107 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013281 0.00000