HEADER ANTIFUNGAL PROTEIN 13-JUL-01 1JKZ TITLE NMR SOLUTION STRUCTURE OF PISUM SATIVUM DEFENSIN 1 (PSD1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEFENSE-RELATED PEPTIDE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PSD1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PISUM SATIVUM; SOURCE 3 ORGANISM_COMMON: PEA; SOURCE 4 ORGANISM_TAXID: 3888; SOURCE 5 OTHER_DETAILS: ISOLATED FROM PEA SEEDS KEYWDS PLANT DEFENSIN, CYS-RICH, ANTIFUNGAL, ANTIFUNGAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.S.ALMEIDA,K.M.S.CABRAL,E.KURTENBACH,F.C.L.ALMEIDA,A.P.VALENTE REVDAT 5 30-OCT-24 1JKZ 1 REMARK REVDAT 4 23-FEB-22 1JKZ 1 REMARK REVDAT 3 24-FEB-09 1JKZ 1 VERSN REVDAT 2 01-APR-03 1JKZ 1 JRNL REVDAT 1 06-FEB-02 1JKZ 0 JRNL AUTH M.S.ALMEIDA,K.M.CABRAL,E.KURTENBACH,F.C.ALMEIDA,A.P.VALENTE JRNL TITL SOLUTION STRUCTURE OF PISUM SATIVUM DEFENSIN 1 BY HIGH JRNL TITL 2 RESOLUTION NMR: PLANT DEFENSINS, IDENTICAL BACKBONE WITH JRNL TITL 3 DIFFERENT MECHANISMS OF ACTION. JRNL REF J.MOL.BIOL. V. 315 749 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 11812144 JRNL DOI 10.1006/JMBI.2001.5252 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.S.ALMEIDA,K.M.S.CABRAL,L.N.MEDEIROS,A.P.VALENTE, REMARK 1 AUTH 2 F.C.L.ALMEIDA,E.KURTENBACH REMARK 1 TITL CDNA CLONING AND HETEROLOGOUS EXPRESSION OF FUNCTIONAL REMARK 1 TITL 2 CYS-RICH ANTIFUNGAL PROTEIN PSD1 IN THE YEAST PICHIA REMARK 1 TITL 3 PASTORIS REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH M.S.ALMEIDA,K.M.CABRAL,R.B.ZINGALI,E.KURTENBACH REMARK 1 TITL CHARACTERIZATION OF TWO NOVEL DEFENSE PEPTIDES FROM PEA REMARK 1 TITL 2 (PISUM SATIVUM) SEEDS REMARK 1 REF ARCH.BIOCHEM.BIOPHYS. V. 378 278 2000 REMARK 1 REFN ISSN 0003-9861 REMARK 1 DOI 10.1006/ABBI.2000.1824 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.5, CNSSOLVE 1.0 REMARK 3 AUTHORS : BRUKER (XWINNMR), AXEL BRUNGER (CNSSOLVE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JKZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-01. REMARK 100 THE DEPOSITION ID IS D_1000013892. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 4 REMARK 210 IONIC STRENGTH : 10 MM SODIUM PHOSPHATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.8 MM PSD1 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; 1H/15N HMQC; REMARK 210 1H/13C HMQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 400 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 5.2, CNSSOLVE 1.0 REMARK 210 METHOD USED : THE STRUCTURE WAS CALCULATED REMARK 210 USING TORSIONAL SIMULATED REMARK 210 ANNEALING AND THEN MINIMIZED REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 18 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 21 HZ2 LYS A 25 1.43 REMARK 500 O CYS A 20 H CYS A 24 1.50 REMARK 500 O HIS A 23 H LYS A 27 1.56 REMARK 500 H HIS A 36 O LYS A 39 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 9 63.34 -107.41 REMARK 500 1 TYR A 10 -169.05 -107.20 REMARK 500 1 HIS A 29 72.03 -38.63 REMARK 500 2 THR A 9 60.41 -105.95 REMARK 500 2 TYR A 10 -164.66 -106.22 REMARK 500 2 ARG A 11 -150.29 -108.35 REMARK 500 2 HIS A 29 75.74 -27.35 REMARK 500 3 THR A 9 56.79 -105.62 REMARK 500 3 HIS A 29 74.02 -27.51 REMARK 500 3 ASN A 37 -76.11 62.63 REMARK 500 3 TRP A 38 20.73 -152.85 REMARK 500 4 THR A 9 58.44 -106.32 REMARK 500 4 TYR A 10 -168.05 -107.98 REMARK 500 4 HIS A 29 76.60 -28.24 REMARK 500 4 ASN A 37 -76.26 62.22 REMARK 500 4 TRP A 38 13.18 -148.83 REMARK 500 5 ASP A 8 33.83 -82.62 REMARK 500 5 HIS A 29 70.38 -38.03 REMARK 500 5 LEU A 30 -167.31 -109.28 REMARK 500 5 HIS A 36 76.36 -110.04 REMARK 500 5 ASN A 37 -76.46 75.03 REMARK 500 6 THR A 9 54.26 -107.14 REMARK 500 6 TYR A 10 -163.74 -106.36 REMARK 500 6 ARG A 11 -149.70 -107.56 REMARK 500 6 HIS A 29 75.18 -29.41 REMARK 500 7 THR A 9 70.96 -105.70 REMARK 500 7 TYR A 10 -169.40 -107.83 REMARK 500 7 PHE A 15 -59.03 73.31 REMARK 500 7 HIS A 29 73.11 -25.86 REMARK 500 8 THR A 9 56.39 -105.60 REMARK 500 8 HIS A 29 76.00 -29.45 REMARK 500 8 ASN A 37 -74.87 60.50 REMARK 500 8 TRP A 38 10.59 -145.35 REMARK 500 9 THR A 9 57.80 -108.07 REMARK 500 9 ASP A 21 -72.49 -45.42 REMARK 500 9 HIS A 29 76.48 -28.12 REMARK 500 9 ASN A 37 -75.34 63.28 REMARK 500 10 THR A 9 48.27 -107.87 REMARK 500 10 TYR A 10 -168.36 -107.08 REMARK 500 10 ARG A 11 -150.46 -106.73 REMARK 500 10 HIS A 29 71.93 -29.26 REMARK 500 10 ASN A 37 -78.26 46.92 REMARK 500 10 TRP A 38 30.60 -147.97 REMARK 500 11 THR A 9 -43.19 -145.11 REMARK 500 11 HIS A 29 69.99 -39.09 REMARK 500 11 HIS A 36 -155.03 -96.65 REMARK 500 11 ASN A 37 78.21 -56.97 REMARK 500 12 THR A 9 60.26 -107.62 REMARK 500 12 TYR A 10 -166.64 -107.33 REMARK 500 12 HIS A 29 73.38 -28.63 REMARK 500 REMARK 500 THIS ENTRY HAS 85 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 AN APPROPRIATE SEQUENCE DATABASE REFERENCE WAS NOT REMARK 999 AVAILABLE AT THE TIME OF PROCESSING. DBREF 1JKZ A 1 46 PDB 1JKZ 1JKZ 1 46 SEQRES 1 A 46 LYS THR CYS GLU HIS LEU ALA ASP THR TYR ARG GLY VAL SEQRES 2 A 46 CYS PHE THR ASN ALA SER CYS ASP ASP HIS CYS LYS ASN SEQRES 3 A 46 LYS ALA HIS LEU ILE SER GLY THR CYS HIS ASN TRP LYS SEQRES 4 A 46 CYS PHE CYS THR GLN ASN CYS HELIX 1 1 THR A 16 ALA A 28 1 13 SHEET 1 A 3 THR A 2 LEU A 6 0 SHEET 2 A 3 LYS A 39 ASN A 45 -1 N CYS A 42 O HIS A 5 SHEET 3 A 3 GLY A 33 HIS A 36 -1 O THR A 34 N PHE A 41 SSBOND 1 CYS A 3 CYS A 46 1555 1555 2.03 SSBOND 2 CYS A 14 CYS A 35 1555 1555 2.03 SSBOND 3 CYS A 20 CYS A 40 1555 1555 2.03 SSBOND 4 CYS A 24 CYS A 42 1555 1555 2.04 CRYST1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1