HEADER TOXIN 15-JUL-01 1JL5 TITLE NOVEL MOLECULAR ARCHITECTURE OF YOPM-A LEUCINE-RICH EFFECTOR PROTEIN TITLE 2 FROM YERSINIA PESTIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER PROTEIN YOPM; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 GENE: YOPM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: MODIFIED PMAL KEYWDS LEUCINE-RICH REPEAT, MOLECULAR PATHOGENESIS, EFFECTOR PROTEIN, KEYWDS 2 VIRULENCE FACTOR, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR A.G.EVDOKIMOV,D.E.ANDERSON,K.M.ROUTZAHN,D.S.WAUGH REVDAT 3 16-AUG-23 1JL5 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1JL5 1 VERSN REVDAT 1 10-OCT-01 1JL5 0 JRNL AUTH A.G.EVDOKIMOV,D.E.ANDERSON,K.M.ROUTZAHN,D.S.WAUGH JRNL TITL UNUSUAL MOLECULAR ARCHITECTURE OF THE YERSINIA PESTIS JRNL TITL 2 CYTOTOXIN YOPM: A LEUCINE-RICH REPEAT PROTEIN WITH THE JRNL TITL 3 SHORTEST REPEATING UNIT. JRNL REF J.MOL.BIOL. V. 312 807 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11575934 JRNL DOI 10.1006/JMBI.2001.4973 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 137581.370 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 58456 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2932 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8575 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 438 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2793 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 339 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : -0.11000 REMARK 3 B33 (A**2) : 0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.25 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.25 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.910 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.190 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.800 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.490 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.650 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 43.81 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JL5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-01. REMARK 100 THE DEPOSITION ID IS D_1000013898. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X9B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.971 REMARK 200 MONOCHROMATOR : SI CRYSTAL (X9B) REMARK 200 OPTICS : MULTILAYER MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58456 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.23000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1G9U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% ISOPROPANOL, 20% ETHYLENE GLYCOL, REMARK 280 0.1M MES, 0.25 M CA(OAC)2, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 74.71500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 74.71500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.59000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 74.71500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.79500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 74.71500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 143.38500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 74.71500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 143.38500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.71500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 47.79500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 74.71500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 74.71500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 95.59000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 74.71500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 74.71500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 95.59000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 74.71500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 143.38500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 74.71500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 47.79500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 74.71500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 47.79500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 74.71500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 143.38500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 74.71500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 74.71500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 95.59000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE REMARK 300 REPRESENTING A POSSIBLE BIOLOGICALLY SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 149.43000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 149.43000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 149.43000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 149.43000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 276 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 300 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1001 REMARK 465 PHE A 1002 REMARK 465 ILE A 1003 REMARK 465 ASN A 1004 REMARK 465 PRO A 1005 REMARK 465 ARG A 1006 REMARK 465 ASN A 1007 REMARK 465 VAL A 1008 REMARK 465 SER A 1009 REMARK 465 ASN A 1010 REMARK 465 THR A 1011 REMARK 465 PHE A 1012 REMARK 465 LEU A 1013 REMARK 465 GLN A 1014 REMARK 465 GLU A 1015 REMARK 465 PRO A 1016 REMARK 465 LEU A 1017 REMARK 465 ARG A 1018 REMARK 465 HIS A 1019 REMARK 465 SER A 1020 REMARK 465 SER A 1021 REMARK 465 ASN A 1022 REMARK 465 LEU A 1023 REMARK 465 THR A 1024 REMARK 465 GLU A 1025 REMARK 465 MET A 1026 REMARK 465 PRO A 1027 REMARK 465 VAL A 1028 REMARK 465 GLU A 1029 REMARK 465 ALA A 1030 REMARK 465 GLU A 1031 REMARK 465 ASN A 1032 REMARK 465 VAL A 1033 REMARK 465 HIS A 1387 REMARK 465 LEU A 1388 REMARK 465 ALA A 1389 REMARK 465 GLU A 1390 REMARK 465 VAL A 1391 REMARK 465 PRO A 1392 REMARK 465 GLU A 1393 REMARK 465 LEU A 1394 REMARK 465 PRO A 1395 REMARK 465 GLN A 1396 REMARK 465 ASN A 1397 REMARK 465 LEU A 1398 REMARK 465 LYS A 1399 REMARK 465 GLN A 1400 REMARK 465 LEU A 1401 REMARK 465 HIS A 1402 REMARK 465 VAL A 1403 REMARK 465 GLU A 1404 REMARK 465 THR A 1405 REMARK 465 ASN A 1406 REMARK 465 PRO A 1407 REMARK 465 LEU A 1408 REMARK 465 ARG A 1409 REMARK 465 GLU A 1410 REMARK 465 PHE A 1411 REMARK 465 PRO A 1412 REMARK 465 ASP A 1413 REMARK 465 ILE A 1414 REMARK 465 PRO A 1415 REMARK 465 GLU A 1416 REMARK 465 SER A 1417 REMARK 465 VAL A 1418 REMARK 465 GLU A 1419 REMARK 465 ASP A 1420 REMARK 465 LEU A 1421 REMARK 465 ARG A 1422 REMARK 465 MET A 1423 REMARK 465 ASN A 1424 REMARK 465 SER A 1425 REMARK 465 GLU A 1426 REMARK 465 ARG A 1427 REMARK 465 VAL A 1428 REMARK 465 VAL A 1429 REMARK 465 ASP A 1430 REMARK 465 PRO A 1431 REMARK 465 TYR A 1432 REMARK 465 GLU A 1433 REMARK 465 PHE A 1434 REMARK 465 ALA A 1435 REMARK 465 HIS A 1436 REMARK 465 GLU A 1437 REMARK 465 THR A 1438 REMARK 465 THR A 1439 REMARK 465 ASP A 1440 REMARK 465 LYS A 1441 REMARK 465 LEU A 1442 REMARK 465 GLU A 1443 REMARK 465 ASP A 1444 REMARK 465 ASP A 1445 REMARK 465 VAL A 1446 REMARK 465 PHE A 1447 REMARK 465 GLU A 1448 REMARK 465 HIS A 1449 REMARK 465 HIS A 1450 REMARK 465 HIS A 1451 REMARK 465 HIS A 1452 REMARK 465 HIS A 1453 REMARK 465 HIS A 1454 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1183 -157.16 -132.95 REMARK 500 ALA A1202 21.77 -140.14 REMARK 500 ALA A1222 33.02 -140.33 REMARK 500 ASN A1225 -156.45 -120.44 REMARK 500 ASN A1247 -157.08 -126.71 REMARK 500 ASP A1266 75.46 55.04 REMARK 500 ASN A1287 -156.75 -120.94 REMARK 500 ASN A1307 -152.47 -116.61 REMARK 500 ASN A1327 -158.47 -132.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 1 O REMARK 620 2 HOH A 2 O 157.1 REMARK 620 3 HOH A 8 O 85.6 94.6 REMARK 620 4 HOH A 18 O 137.4 64.0 76.2 REMARK 620 5 ASP A1266 OD1 73.5 83.8 82.2 139.1 REMARK 620 6 ASN A1307 O 77.1 124.8 102.7 70.0 149.8 REMARK 620 7 GLU A1308 OE1 96.3 79.2 168.3 109.2 87.3 88.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 5 O REMARK 620 2 HOH A 9 O 163.9 REMARK 620 3 HOH A 28 O 88.8 97.9 REMARK 620 4 ASN A1246 OD1 97.4 97.2 90.2 REMARK 620 5 ASP A1266 OD2 84.5 88.6 173.3 90.6 REMARK 620 6 ASN A1326 OD1 80.6 84.0 98.2 171.3 80.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 27 O REMARK 620 2 HOH A 189 O 108.7 REMARK 620 3 HOH A 292 O 85.5 165.8 REMARK 620 4 HOH A 316 O 79.3 88.3 94.5 REMARK 620 5 ASN A1162 OD1 76.1 81.2 103.0 148.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2005 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 76 O REMARK 620 2 GLU A1059 OE2 147.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2004 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 232 O REMARK 620 2 HOH A 392 O 82.5 REMARK 620 3 GLU A1274 OE2 90.1 63.1 REMARK 620 4 GLU A1274 OE1 80.5 110.5 50.2 REMARK 620 5 GLU A1294 OE1 156.1 74.3 74.4 102.0 REMARK 620 6 GLU A1294 OE2 118.5 67.6 117.9 159.4 57.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2005 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G9U RELATED DB: PDB REMARK 900 1G9U IS THE COMPANION STRUCTURE - SAME PUBLICATION. TWO DIFFERENT REMARK 900 SPACEGROUPS, SAME TETRAMERIC ORGANIZATION. DBREF 1JL5 A 1001 1448 UNP P17778 YOPM_YERPE 1 409 SEQADV 1JL5 ASN A 1385 UNP P17778 SEE REMARK 999 SEQADV 1JL5 SER A 1386 UNP P17778 SEE REMARK 999 SEQADV 1JL5 HIS A 1387 UNP P17778 SEE REMARK 999 SEQADV 1JL5 LEU A 1388 UNP P17778 SEE REMARK 999 SEQADV 1JL5 ALA A 1389 UNP P17778 SEE REMARK 999 SEQADV 1JL5 GLU A 1390 UNP P17778 SEE REMARK 999 SEQADV 1JL5 VAL A 1391 UNP P17778 SEE REMARK 999 SEQADV 1JL5 PRO A 1392 UNP P17778 SEE REMARK 999 SEQADV 1JL5 GLU A 1393 UNP P17778 SEE REMARK 999 SEQADV 1JL5 LEU A 1394 UNP P17778 SEE REMARK 999 SEQADV 1JL5 PRO A 1395 UNP P17778 SEE REMARK 999 SEQADV 1JL5 GLN A 1396 UNP P17778 SEE REMARK 999 SEQADV 1JL5 ASN A 1397 UNP P17778 SEE REMARK 999 SEQADV 1JL5 LEU A 1398 UNP P17778 SEE REMARK 999 SEQADV 1JL5 LYS A 1399 UNP P17778 SEE REMARK 999 SEQADV 1JL5 GLN A 1400 UNP P17778 SEE REMARK 999 SEQADV 1JL5 LEU A 1401 UNP P17778 SEE REMARK 999 SEQADV 1JL5 HIS A 1402 UNP P17778 SEE REMARK 999 SEQADV 1JL5 VAL A 1403 UNP P17778 SEE REMARK 999 SEQADV 1JL5 GLU A 1404 UNP P17778 SEE REMARK 999 SEQADV 1JL5 THR A 1405 UNP P17778 SEE REMARK 999 SEQADV 1JL5 ASN A 1406 UNP P17778 SEE REMARK 999 SEQADV 1JL5 PRO A 1407 UNP P17778 SEE REMARK 999 SEQADV 1JL5 LEU A 1408 UNP P17778 SEE REMARK 999 SEQADV 1JL5 ARG A 1409 UNP P17778 SEE REMARK 999 SEQADV 1JL5 GLU A 1410 UNP P17778 SEE REMARK 999 SEQADV 1JL5 PHE A 1411 UNP P17778 SEE REMARK 999 SEQADV 1JL5 PRO A 1412 UNP P17778 SEE REMARK 999 SEQADV 1JL5 ASP A 1413 UNP P17778 SEE REMARK 999 SEQADV 1JL5 ILE A 1414 UNP P17778 SEE REMARK 999 SEQADV 1JL5 PRO A 1415 UNP P17778 SEE REMARK 999 SEQADV 1JL5 GLU A 1416 UNP P17778 SEE REMARK 999 SEQADV 1JL5 SER A 1417 UNP P17778 SEE REMARK 999 SEQADV 1JL5 VAL A 1418 UNP P17778 SEE REMARK 999 SEQADV 1JL5 GLU A 1419 UNP P17778 SEE REMARK 999 SEQADV 1JL5 ASP A 1420 UNP P17778 SEE REMARK 999 SEQADV 1JL5 LEU A 1421 UNP P17778 SEE REMARK 999 SEQADV 1JL5 ARG A 1422 UNP P17778 SEE REMARK 999 SEQADV 1JL5 MET A 1423 UNP P17778 SEE REMARK 999 SEQADV 1JL5 HIS A 1449 UNP P17778 EXPRESSION TAG SEQADV 1JL5 HIS A 1450 UNP P17778 EXPRESSION TAG SEQADV 1JL5 HIS A 1451 UNP P17778 EXPRESSION TAG SEQADV 1JL5 HIS A 1452 UNP P17778 EXPRESSION TAG SEQADV 1JL5 HIS A 1453 UNP P17778 EXPRESSION TAG SEQADV 1JL5 HIS A 1454 UNP P17778 EXPRESSION TAG SEQRES 1 A 454 MET PHE ILE ASN PRO ARG ASN VAL SER ASN THR PHE LEU SEQRES 2 A 454 GLN GLU PRO LEU ARG HIS SER SER ASN LEU THR GLU MET SEQRES 3 A 454 PRO VAL GLU ALA GLU ASN VAL LYS SER LYS THR GLU TYR SEQRES 4 A 454 TYR ASN ALA TRP SER GLU TRP GLU ARG ASN ALA PRO PRO SEQRES 5 A 454 GLY ASN GLY GLU GLN ARG GLU MET ALA VAL SER ARG LEU SEQRES 6 A 454 ARG ASP CYS LEU ASP ARG GLN ALA HIS GLU LEU GLU LEU SEQRES 7 A 454 ASN ASN LEU GLY LEU SER SER LEU PRO GLU LEU PRO PRO SEQRES 8 A 454 HIS LEU GLU SER LEU VAL ALA SER CYS ASN SER LEU THR SEQRES 9 A 454 GLU LEU PRO GLU LEU PRO GLN SER LEU LYS SER LEU LEU SEQRES 10 A 454 VAL ASP ASN ASN ASN LEU LYS ALA LEU SER ASP LEU PRO SEQRES 11 A 454 PRO LEU LEU GLU TYR LEU GLY VAL SER ASN ASN GLN LEU SEQRES 12 A 454 GLU LYS LEU PRO GLU LEU GLN ASN SER SER PHE LEU LYS SEQRES 13 A 454 ILE ILE ASP VAL ASP ASN ASN SER LEU LYS LYS LEU PRO SEQRES 14 A 454 ASP LEU PRO PRO SER LEU GLU PHE ILE ALA ALA GLY ASN SEQRES 15 A 454 ASN GLN LEU GLU GLU LEU PRO GLU LEU GLN ASN LEU PRO SEQRES 16 A 454 PHE LEU THR ALA ILE TYR ALA ASP ASN ASN SER LEU LYS SEQRES 17 A 454 LYS LEU PRO ASP LEU PRO LEU SER LEU GLU SER ILE VAL SEQRES 18 A 454 ALA GLY ASN ASN ILE LEU GLU GLU LEU PRO GLU LEU GLN SEQRES 19 A 454 ASN LEU PRO PHE LEU THR THR ILE TYR ALA ASP ASN ASN SEQRES 20 A 454 LEU LEU LYS THR LEU PRO ASP LEU PRO PRO SER LEU GLU SEQRES 21 A 454 ALA LEU ASN VAL ARG ASP ASN TYR LEU THR ASP LEU PRO SEQRES 22 A 454 GLU LEU PRO GLN SER LEU THR PHE LEU ASP VAL SER GLU SEQRES 23 A 454 ASN ILE PHE SER GLY LEU SER GLU LEU PRO PRO ASN LEU SEQRES 24 A 454 TYR TYR LEU ASN ALA SER SER ASN GLU ILE ARG SER LEU SEQRES 25 A 454 CYS ASP LEU PRO PRO SER LEU GLU GLU LEU ASN VAL SER SEQRES 26 A 454 ASN ASN LYS LEU ILE GLU LEU PRO ALA LEU PRO PRO ARG SEQRES 27 A 454 LEU GLU ARG LEU ILE ALA SER PHE ASN HIS LEU ALA GLU SEQRES 28 A 454 VAL PRO GLU LEU PRO GLN ASN LEU LYS GLN LEU HIS VAL SEQRES 29 A 454 GLU TYR ASN PRO LEU ARG GLU PHE PRO ASP ILE PRO GLU SEQRES 30 A 454 SER VAL GLU ASP LEU ARG MET ASN SER HIS LEU ALA GLU SEQRES 31 A 454 VAL PRO GLU LEU PRO GLN ASN LEU LYS GLN LEU HIS VAL SEQRES 32 A 454 GLU THR ASN PRO LEU ARG GLU PHE PRO ASP ILE PRO GLU SEQRES 33 A 454 SER VAL GLU ASP LEU ARG MET ASN SER GLU ARG VAL VAL SEQRES 34 A 454 ASP PRO TYR GLU PHE ALA HIS GLU THR THR ASP LYS LEU SEQRES 35 A 454 GLU ASP ASP VAL PHE GLU HIS HIS HIS HIS HIS HIS HET CA A2001 1 HET CA A2002 1 HET CA A2003 1 HET CA A2004 1 HET CA A2005 1 HETNAM CA CALCIUM ION FORMUL 2 CA 5(CA 2+) FORMUL 7 HOH *339(H2 O) HELIX 1 1 SER A 1035 ASN A 1049 1 15 HELIX 2 2 GLN A 1057 GLN A 1072 1 16 SHEET 1 A16 GLU A1075 GLU A1077 0 SHEET 2 A16 SER A1095 VAL A1097 1 O SER A1095 N LEU A1076 SHEET 3 A16 SER A1115 LEU A1117 1 O SER A1115 N LEU A1096 SHEET 4 A16 TYR A1135 GLY A1137 1 O TYR A1135 N LEU A1116 SHEET 5 A16 ILE A1157 ASP A1159 1 O ILE A1157 N LEU A1136 SHEET 6 A16 PHE A1177 ALA A1179 1 O PHE A1177 N ILE A1158 SHEET 7 A16 ALA A1199 TYR A1201 1 O ALA A1199 N ILE A1178 SHEET 8 A16 SER A1219 VAL A1221 1 O SER A1219 N ILE A1200 SHEET 9 A16 THR A1241 TYR A1243 1 O THR A1241 N ILE A1220 SHEET 10 A16 ALA A1261 ASN A1263 1 O ALA A1261 N ILE A1242 SHEET 11 A16 PHE A1281 ASP A1283 1 O PHE A1281 N LEU A1262 SHEET 12 A16 TYR A1301 ASN A1303 1 O TYR A1301 N LEU A1282 SHEET 13 A16 GLU A1321 ASN A1323 1 O GLU A1321 N LEU A1302 SHEET 14 A16 ARG A1341 ILE A1343 1 O ARG A1341 N LEU A1322 SHEET 15 A16 GLN A1361 HIS A1363 1 O GLN A1361 N LEU A1342 SHEET 16 A16 ASP A1381 ARG A1383 1 O ASP A1381 N LEU A1362 SHEET 1 B 2 GLY A1291 LEU A1292 0 SHEET 2 B 2 SER A1311 LEU A1312 1 O SER A1311 N LEU A1292 LINK O HOH A 1 CA CA A2002 1555 1555 2.36 LINK O HOH A 2 CA CA A2002 1555 1555 2.49 LINK O HOH A 5 CA CA A2001 1555 1555 2.21 LINK O HOH A 8 CA CA A2002 1555 1555 2.31 LINK O HOH A 9 CA CA A2001 1555 1555 2.32 LINK O HOH A 18 CA CA A2002 1555 1555 2.81 LINK O HOH A 27 CA CA A2003 1555 1555 2.50 LINK O HOH A 28 CA CA A2001 1555 1555 2.22 LINK O HOH A 76 CA CA A2005 5654 1555 2.97 LINK O HOH A 189 CA CA A2003 1555 1555 2.37 LINK O HOH A 232 CA CA A2004 1555 1555 2.39 LINK O HOH A 292 CA CA A2003 10665 1555 2.85 LINK O HOH A 316 CA CA A2003 1555 1555 2.91 LINK O HOH A 392 CA CA A2004 1555 1555 2.62 LINK OE2 GLU A1059 CA CA A2005 1555 1555 3.10 LINK OD1 ASN A1162 CA CA A2003 1555 1555 2.44 LINK OD1 ASN A1246 CA CA A2001 1555 1555 2.04 LINK OD2 ASP A1266 CA CA A2001 1555 1555 2.03 LINK OD1 ASP A1266 CA CA A2002 1555 1555 2.24 LINK OE2 GLU A1274 CA CA A2004 1555 1555 2.75 LINK OE1 GLU A1274 CA CA A2004 1555 1555 2.36 LINK OE1 GLU A1294 CA CA A2004 1555 1555 2.18 LINK OE2 GLU A1294 CA CA A2004 1555 1555 2.40 LINK O ASN A1307 CA CA A2002 10665 1555 2.27 LINK OE1 GLU A1308 CA CA A2002 10665 1555 2.29 LINK OD1 ASN A1326 CA CA A2001 10665 1555 2.24 SITE 1 AC1 6 HOH A 5 HOH A 9 HOH A 28 ASN A1246 SITE 2 AC1 6 ASP A1266 ASN A1326 SITE 1 AC2 7 HOH A 1 HOH A 2 HOH A 8 HOH A 18 SITE 2 AC2 7 ASP A1266 ASN A1307 GLU A1308 SITE 1 AC3 6 HOH A 27 HOH A 189 HOH A 292 HOH A 316 SITE 2 AC3 6 ASN A1162 ASN A1182 SITE 1 AC4 4 HOH A 232 HOH A 392 GLU A1274 GLU A1294 SITE 1 AC5 2 HOH A 76 GLU A1059 CRYST1 149.430 149.430 191.180 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006692 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006692 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005231 0.00000