data_1JMC # _entry.id 1JMC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1JMC RCSB PDO001 WWPDB D_1000174345 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1JMC _pdbx_database_status.recvd_initial_deposition_date 1996-11-11 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bochkarev, A.' 1 'Pfuetzner, R.' 2 'Edwards, A.' 3 'Frappier, L.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structure of the single-stranded-DNA-binding domain of replication protein A bound to DNA.' Nature 385 176 181 1997 NATUAS UK 0028-0836 0006 ? 8990123 10.1038/385176a0 1 'Replication Protein A. Characterization and Crystallization of the DNA Binding Domain' J.Biol.Chem. 272 430 ? 1997 JBCHA3 US 0021-9258 0071 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bochkarev, A.' 1 primary 'Pfuetzner, R.A.' 2 primary 'Edwards, A.M.' 3 primary 'Frappier, L.' 4 1 'Pfuetzner, R.A.' 5 1 'Bochkarev, A.' 6 1 'Frappier, L.' 7 1 'Edwards, A.M.' 8 # _cell.entry_id 1JMC _cell.length_a 34.250 _cell.length_b 77.990 _cell.length_c 95.360 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JMC _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*CP*CP*CP*CP*CP*CP*C)-3') ; 2268.497 1 ? ? ? ? 2 polymer man 'PROTEIN (REPLICATION PROTEIN A (RPA))' 27516.953 1 ? ? ? ? 3 water nat water 18.015 90 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)' CCCCCCCC B ? 2 'polypeptide(L)' no no ;GSHMQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYY FSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRS NNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFD AEGQAL ; ;GSHMQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYY FSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRS NNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFD AEGQAL ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DC n 1 4 DC n 1 5 DC n 1 6 DC n 1 7 DC n 1 8 DC n 2 1 GLY n 2 2 SER n 2 3 HIS n 2 4 MET n 2 5 GLN n 2 6 SER n 2 7 LYS n 2 8 VAL n 2 9 VAL n 2 10 PRO n 2 11 ILE n 2 12 ALA n 2 13 SER n 2 14 LEU n 2 15 THR n 2 16 PRO n 2 17 TYR n 2 18 GLN n 2 19 SER n 2 20 LYS n 2 21 TRP n 2 22 THR n 2 23 ILE n 2 24 CYS n 2 25 ALA n 2 26 ARG n 2 27 VAL n 2 28 THR n 2 29 ASN n 2 30 LYS n 2 31 SER n 2 32 GLN n 2 33 ILE n 2 34 ARG n 2 35 THR n 2 36 TRP n 2 37 SER n 2 38 ASN n 2 39 SER n 2 40 ARG n 2 41 GLY n 2 42 GLU n 2 43 GLY n 2 44 LYS n 2 45 LEU n 2 46 PHE n 2 47 SER n 2 48 LEU n 2 49 GLU n 2 50 LEU n 2 51 VAL n 2 52 ASP n 2 53 GLU n 2 54 SER n 2 55 GLY n 2 56 GLU n 2 57 ILE n 2 58 ARG n 2 59 ALA n 2 60 THR n 2 61 ALA n 2 62 PHE n 2 63 ASN n 2 64 GLU n 2 65 GLN n 2 66 VAL n 2 67 ASP n 2 68 LYS n 2 69 PHE n 2 70 PHE n 2 71 PRO n 2 72 LEU n 2 73 ILE n 2 74 GLU n 2 75 VAL n 2 76 ASN n 2 77 LYS n 2 78 VAL n 2 79 TYR n 2 80 TYR n 2 81 PHE n 2 82 SER n 2 83 LYS n 2 84 GLY n 2 85 THR n 2 86 LEU n 2 87 LYS n 2 88 ILE n 2 89 ALA n 2 90 ASN n 2 91 LYS n 2 92 GLN n 2 93 PHE n 2 94 THR n 2 95 ALA n 2 96 VAL n 2 97 LYS n 2 98 ASN n 2 99 ASP n 2 100 TYR n 2 101 GLU n 2 102 MET n 2 103 THR n 2 104 PHE n 2 105 ASN n 2 106 ASN n 2 107 GLU n 2 108 THR n 2 109 SER n 2 110 VAL n 2 111 MET n 2 112 PRO n 2 113 CYS n 2 114 GLU n 2 115 ASP n 2 116 ASP n 2 117 HIS n 2 118 HIS n 2 119 LEU n 2 120 PRO n 2 121 THR n 2 122 VAL n 2 123 GLN n 2 124 PHE n 2 125 ASP n 2 126 PHE n 2 127 THR n 2 128 GLY n 2 129 ILE n 2 130 ASP n 2 131 ASP n 2 132 LEU n 2 133 GLU n 2 134 ASN n 2 135 LYS n 2 136 SER n 2 137 LYS n 2 138 ASP n 2 139 SER n 2 140 LEU n 2 141 VAL n 2 142 ASP n 2 143 ILE n 2 144 ILE n 2 145 GLY n 2 146 ILE n 2 147 CYS n 2 148 LYS n 2 149 SER n 2 150 TYR n 2 151 GLU n 2 152 ASP n 2 153 ALA n 2 154 THR n 2 155 LYS n 2 156 ILE n 2 157 THR n 2 158 VAL n 2 159 ARG n 2 160 SER n 2 161 ASN n 2 162 ASN n 2 163 ARG n 2 164 GLU n 2 165 VAL n 2 166 ALA n 2 167 LYS n 2 168 ARG n 2 169 ASN n 2 170 ILE n 2 171 TYR n 2 172 LEU n 2 173 MET n 2 174 ASP n 2 175 THR n 2 176 SER n 2 177 GLY n 2 178 LYS n 2 179 VAL n 2 180 VAL n 2 181 THR n 2 182 ALA n 2 183 THR n 2 184 LEU n 2 185 TRP n 2 186 GLY n 2 187 GLU n 2 188 ASP n 2 189 ALA n 2 190 ASP n 2 191 LYS n 2 192 PHE n 2 193 ASP n 2 194 GLY n 2 195 SER n 2 196 ARG n 2 197 GLN n 2 198 PRO n 2 199 VAL n 2 200 LEU n 2 201 ALA n 2 202 ILE n 2 203 LYS n 2 204 GLY n 2 205 ALA n 2 206 ARG n 2 207 VAL n 2 208 SER n 2 209 ASP n 2 210 PHE n 2 211 GLY n 2 212 GLY n 2 213 ARG n 2 214 SER n 2 215 LEU n 2 216 SER n 2 217 VAL n 2 218 LEU n 2 219 SER n 2 220 SER n 2 221 SER n 2 222 THR n 2 223 ILE n 2 224 ILE n 2 225 ALA n 2 226 ASN n 2 227 PRO n 2 228 ASP n 2 229 ILE n 2 230 PRO n 2 231 GLU n 2 232 ALA n 2 233 TYR n 2 234 LYS n 2 235 LEU n 2 236 ARG n 2 237 GLY n 2 238 TRP n 2 239 PHE n 2 240 ASP n 2 241 ALA n 2 242 GLU n 2 243 GLY n 2 244 GLN n 2 245 ALA n 2 246 LEU n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3) PLYSS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET15B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP RFA1_HUMAN 2 ? ? P27694 ? 2 PDB 1JMC 1 ? ? 1JMC ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1JMC A 5 ? 246 ? P27694 181 ? 422 ? 181 422 2 2 1JMC B 1 ? 8 ? 1JMC 11 ? 18 ? 11 18 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1JMC _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.13 _exptl_crystal.density_percent_sol 40.0000 _exptl_crystal.description 'THREE DIFFERENT MONO-IODINATED AND ONE DI-IODINATED DNA DERIVATIVES WERE USED.' # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.8 _exptl_crystal_grow.pdbx_details '24-27% PEG2000 MME, 20MM NA_CL, 20MM MGCL2, 5MM DTT, 100MM MES PH 6.8, VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 'PEG 2000' ? ? ? 1 3 1 NACL ? ? ? 1 4 1 MGCL2 ? ? ? 1 5 1 DTT ? ? ? 1 6 1 MES ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date 1996-06-25 _diffrn_detector.details MSC # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1JMC _reflns.observed_criterion_sigma_I 1.000 _reflns.observed_criterion_sigma_F 1.000 _reflns.d_resolution_low 35.000 _reflns.d_resolution_high 2.200 _reflns.number_obs 13045 _reflns.number_all ? _reflns.percent_possible_obs 95.000 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10.80 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.200 _reflns_shell.d_res_low 2.340 _reflns_shell.percent_possible_all 87.80 _reflns_shell.Rmerge_I_obs 0.165 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1JMC _refine.ls_number_reflns_obs 9460 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF 100000.000 _refine.pdbx_data_cutoff_low_absF 0.1000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 6.000 _refine.ls_d_res_high 2.400 _refine.ls_percent_reflns_obs 95.500 _refine.ls_R_factor_obs 0.212 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1 _refine.ls_R_factor_R_free 0.33 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.00 _refine.ls_number_reflns_R_free 955 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;AMINO ACIDS 239 AND 259 ARE IN DISALLOWED REGIONS OF THE RAMACHANDRAN PLOT. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MIRAS _refine.pdbx_isotropic_thermal_model 'RESTRAINED INDIVIDUAL B F' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2316 _refine_hist.pdbx_number_atoms_nucleic_acid 169 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 270 _refine_hist.number_atoms_total 2755 _refine_hist.d_res_high 2.400 _refine_hist.d_res_low 6.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.016 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.60 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? 2.000 ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? 2.500 ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? 2.500 ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? 3.000 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.40 _refine_ls_shell.d_res_low 2.50 _refine_ls_shell.number_reflns_R_work 1024 _refine_ls_shell.R_factor_R_work 0.257 _refine_ls_shell.percent_reflns_obs 93.40 _refine_ls_shell.R_factor_R_free 0.357 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 116 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 1JMC _struct.title 'SINGLE STRANDED DNA-BINDING DOMAIN OF HUMAN REPLICATION PROTEIN A BOUND TO SINGLE STRANDED DNA, RPA70 SUBUNIT, RESIDUES 183-420' _struct.pdbx_descriptor 'REPLICATION PROTEIN A/DNA COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1JMC _struct_keywords.pdbx_keywords REPLICATION/DNA _struct_keywords.text ;HUMAN SSDNA BINDING REPLICATION PROTEIN A(RPA), SINGLE STRANDED DNA-BINDING PROTEIN, PROTEIN-SSDNA COMPLEX, COMPLEX (DNA-BINDING PROTEIN-DNA), REPLICATION-DNA COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE B 11 ? SER B 13 ? ILE A 187 SER A 189 5 ? 3 HELX_P HELX_P2 2 ASN B 63 ? LEU B 72 ? ASN A 239 LEU A 248 1 ? 10 HELX_P HELX_P3 3 LYS B 91 ? PHE B 93 ? LYS A 267 PHE A 269 5 ? 3 HELX_P HELX_P4 4 LEU B 132 ? ASN B 134 ? LEU A 308 ASN A 310 5 ? 3 HELX_P HELX_P5 5 GLY B 186 ? LYS B 191 ? GLY A 362 LYS A 367 1 ? 6 HELX_P HELX_P6 6 PRO B 230 ? ALA B 241 ? PRO A 406 ALA A 417 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 24 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 113 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 200 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 289 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.352 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? C ? 2 ? D ? 3 ? E ? 4 ? F ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel F 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER B 109 ? PRO B 112 ? SER A 285 PRO A 288 A 2 VAL B 78 ? SER B 82 ? VAL A 254 SER A 258 A 3 THR B 22 ? LYS B 30 ? THR A 198 LYS A 206 A 4 LEU B 45 ? VAL B 51 ? LEU A 221 VAL A 227 A 5 GLU B 56 ? PHE B 62 ? GLU A 232 PHE A 238 B 1 ARG B 34 ? SER B 37 ? ARG A 210 SER A 213 B 2 GLU B 42 ? LEU B 45 ? GLU A 218 LEU A 221 C 1 THR B 85 ? ILE B 88 ? THR A 261 ILE A 264 C 2 TYR B 100 ? THR B 103 ? TYR A 276 THR A 279 D 1 THR B 154 ? VAL B 158 ? THR A 330 VAL A 334 D 2 ARG B 163 ? MET B 173 ? ARG A 339 MET A 349 D 3 VAL B 179 ? TRP B 185 ? VAL A 355 TRP A 361 E 1 THR B 222 ? ILE B 224 ? THR A 398 ILE A 400 E 2 VAL B 199 ? ARG B 206 ? VAL A 375 ARG A 382 E 3 LEU B 140 ? TYR B 150 ? LEU A 316 TYR A 326 E 4 ILE B 170 ? MET B 173 ? ILE A 346 MET A 349 F 1 ARG B 206 ? SER B 208 ? ARG A 382 SER A 384 F 2 SER B 214 ? SER B 216 ? SER A 390 SER A 392 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O SER B 109 ? O SER A 285 N SER B 82 ? N SER A 258 A 2 3 O TYR B 79 ? O TYR A 255 N ALA B 25 ? N ALA A 201 A 3 4 O ARG B 26 ? O ARG A 202 N VAL B 51 ? N VAL A 227 A 4 5 O PHE B 46 ? O PHE A 222 N ALA B 61 ? N ALA A 237 B 1 2 O ARG B 34 ? O ARG A 210 N LEU B 45 ? N LEU A 221 C 1 2 O THR B 85 ? O THR A 261 N THR B 103 ? N THR A 279 D 1 2 O THR B 154 ? O THR A 330 N LYS B 167 ? N LYS A 343 D 2 3 O ARG B 168 ? O ARG A 344 N LEU B 184 ? N LEU A 360 E 1 2 O THR B 222 ? O THR A 398 N LYS B 203 ? N LYS A 379 E 2 3 O LEU B 200 ? O LEU A 376 N GLY B 145 ? N GLY A 321 E 3 4 O ILE B 146 ? O ILE A 322 N MET B 173 ? N MET A 349 F 1 2 O ARG B 206 ? O ARG A 382 N SER B 216 ? N SER A 392 # _database_PDB_matrix.entry_id 1JMC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1JMC _atom_sites.fract_transf_matrix[1][1] 0.029197 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012822 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010487 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 11 11 DC C B . n A 1 2 DC 2 12 12 DC C B . n A 1 3 DC 3 13 13 DC C B . n A 1 4 DC 4 14 14 DC C B . n A 1 5 DC 5 15 15 DC C B . n A 1 6 DC 6 16 16 DC C B . n A 1 7 DC 7 17 17 DC C B . n A 1 8 DC 8 18 18 DC C B . n B 2 1 GLY 1 177 ? ? ? A . n B 2 2 SER 2 178 ? ? ? A . n B 2 3 HIS 3 179 ? ? ? A . n B 2 4 MET 4 180 ? ? ? A . n B 2 5 GLN 5 181 ? ? ? A . n B 2 6 SER 6 182 ? ? ? A . n B 2 7 LYS 7 183 183 LYS LYS A . n B 2 8 VAL 8 184 184 VAL VAL A . n B 2 9 VAL 9 185 185 VAL VAL A . n B 2 10 PRO 10 186 186 PRO PRO A . n B 2 11 ILE 11 187 187 ILE ILE A . n B 2 12 ALA 12 188 188 ALA ALA A . n B 2 13 SER 13 189 189 SER SER A . n B 2 14 LEU 14 190 190 LEU LEU A . n B 2 15 THR 15 191 191 THR THR A . n B 2 16 PRO 16 192 192 PRO PRO A . n B 2 17 TYR 17 193 193 TYR TYR A . n B 2 18 GLN 18 194 194 GLN GLN A . n B 2 19 SER 19 195 195 SER SER A . n B 2 20 LYS 20 196 196 LYS LYS A . n B 2 21 TRP 21 197 197 TRP TRP A . n B 2 22 THR 22 198 198 THR THR A . n B 2 23 ILE 23 199 199 ILE ILE A . n B 2 24 CYS 24 200 200 CYS CYS A . n B 2 25 ALA 25 201 201 ALA ALA A . n B 2 26 ARG 26 202 202 ARG ARG A . n B 2 27 VAL 27 203 203 VAL VAL A . n B 2 28 THR 28 204 204 THR THR A . n B 2 29 ASN 29 205 205 ASN ASN A . n B 2 30 LYS 30 206 206 LYS LYS A . n B 2 31 SER 31 207 207 SER SER A . n B 2 32 GLN 32 208 208 GLN GLN A . n B 2 33 ILE 33 209 209 ILE ILE A . n B 2 34 ARG 34 210 210 ARG ARG A . n B 2 35 THR 35 211 211 THR THR A . n B 2 36 TRP 36 212 212 TRP TRP A . n B 2 37 SER 37 213 213 SER SER A . n B 2 38 ASN 38 214 214 ASN ASN A . n B 2 39 SER 39 215 215 SER SER A . n B 2 40 ARG 40 216 216 ARG ARG A . n B 2 41 GLY 41 217 217 GLY GLY A . n B 2 42 GLU 42 218 218 GLU GLU A . n B 2 43 GLY 43 219 219 GLY GLY A . n B 2 44 LYS 44 220 220 LYS LYS A . n B 2 45 LEU 45 221 221 LEU LEU A . n B 2 46 PHE 46 222 222 PHE PHE A . n B 2 47 SER 47 223 223 SER SER A . n B 2 48 LEU 48 224 224 LEU LEU A . n B 2 49 GLU 49 225 225 GLU GLU A . n B 2 50 LEU 50 226 226 LEU LEU A . n B 2 51 VAL 51 227 227 VAL VAL A . n B 2 52 ASP 52 228 228 ASP ASP A . n B 2 53 GLU 53 229 229 GLU GLU A . n B 2 54 SER 54 230 230 SER SER A . n B 2 55 GLY 55 231 231 GLY GLY A . n B 2 56 GLU 56 232 232 GLU GLU A . n B 2 57 ILE 57 233 233 ILE ILE A . n B 2 58 ARG 58 234 234 ARG ARG A . n B 2 59 ALA 59 235 235 ALA ALA A . n B 2 60 THR 60 236 236 THR THR A . n B 2 61 ALA 61 237 237 ALA ALA A . n B 2 62 PHE 62 238 238 PHE PHE A . n B 2 63 ASN 63 239 239 ASN ASN A . n B 2 64 GLU 64 240 240 GLU GLU A . n B 2 65 GLN 65 241 241 GLN GLN A . n B 2 66 VAL 66 242 242 VAL VAL A . n B 2 67 ASP 67 243 243 ASP ASP A . n B 2 68 LYS 68 244 244 LYS LYS A . n B 2 69 PHE 69 245 245 PHE PHE A . n B 2 70 PHE 70 246 246 PHE PHE A . n B 2 71 PRO 71 247 247 PRO PRO A . n B 2 72 LEU 72 248 248 LEU LEU A . n B 2 73 ILE 73 249 249 ILE ILE A . n B 2 74 GLU 74 250 250 GLU GLU A . n B 2 75 VAL 75 251 251 VAL VAL A . n B 2 76 ASN 76 252 252 ASN ASN A . n B 2 77 LYS 77 253 253 LYS LYS A . n B 2 78 VAL 78 254 254 VAL VAL A . n B 2 79 TYR 79 255 255 TYR TYR A . n B 2 80 TYR 80 256 256 TYR TYR A . n B 2 81 PHE 81 257 257 PHE PHE A . n B 2 82 SER 82 258 258 SER SER A . n B 2 83 LYS 83 259 259 LYS LYS A . n B 2 84 GLY 84 260 260 GLY GLY A . n B 2 85 THR 85 261 261 THR THR A . n B 2 86 LEU 86 262 262 LEU LEU A . n B 2 87 LYS 87 263 263 LYS LYS A . n B 2 88 ILE 88 264 264 ILE ILE A . n B 2 89 ALA 89 265 265 ALA ALA A . n B 2 90 ASN 90 266 266 ASN ASN A . n B 2 91 LYS 91 267 267 LYS LYS A . n B 2 92 GLN 92 268 268 GLN GLN A . n B 2 93 PHE 93 269 269 PHE PHE A . n B 2 94 THR 94 270 270 THR THR A . n B 2 95 ALA 95 271 271 ALA ALA A . n B 2 96 VAL 96 272 272 VAL VAL A . n B 2 97 LYS 97 273 273 LYS LYS A . n B 2 98 ASN 98 274 274 ASN ASN A . n B 2 99 ASP 99 275 275 ASP ASP A . n B 2 100 TYR 100 276 276 TYR TYR A . n B 2 101 GLU 101 277 277 GLU GLU A . n B 2 102 MET 102 278 278 MET MET A . n B 2 103 THR 103 279 279 THR THR A . n B 2 104 PHE 104 280 280 PHE PHE A . n B 2 105 ASN 105 281 281 ASN ASN A . n B 2 106 ASN 106 282 282 ASN ASN A . n B 2 107 GLU 107 283 283 GLU GLU A . n B 2 108 THR 108 284 284 THR THR A . n B 2 109 SER 109 285 285 SER SER A . n B 2 110 VAL 110 286 286 VAL VAL A . n B 2 111 MET 111 287 287 MET MET A . n B 2 112 PRO 112 288 288 PRO PRO A . n B 2 113 CYS 113 289 289 CYS CYS A . n B 2 114 GLU 114 290 290 GLU GLU A . n B 2 115 ASP 115 291 291 ASP ASP A . n B 2 116 ASP 116 292 292 ASP ASP A . n B 2 117 HIS 117 293 293 HIS HIS A . n B 2 118 HIS 118 294 294 HIS HIS A . n B 2 119 LEU 119 295 295 LEU LEU A . n B 2 120 PRO 120 296 296 PRO PRO A . n B 2 121 THR 121 297 297 THR THR A . n B 2 122 VAL 122 298 298 VAL VAL A . n B 2 123 GLN 123 299 299 GLN GLN A . n B 2 124 PHE 124 300 300 PHE PHE A . n B 2 125 ASP 125 301 301 ASP ASP A . n B 2 126 PHE 126 302 302 PHE PHE A . n B 2 127 THR 127 303 303 THR THR A . n B 2 128 GLY 128 304 304 GLY GLY A . n B 2 129 ILE 129 305 305 ILE ILE A . n B 2 130 ASP 130 306 306 ASP ASP A . n B 2 131 ASP 131 307 307 ASP ASP A . n B 2 132 LEU 132 308 308 LEU LEU A . n B 2 133 GLU 133 309 309 GLU GLU A . n B 2 134 ASN 134 310 310 ASN ASN A . n B 2 135 LYS 135 311 311 LYS LYS A . n B 2 136 SER 136 312 312 SER SER A . n B 2 137 LYS 137 313 313 LYS LYS A . n B 2 138 ASP 138 314 314 ASP ASP A . n B 2 139 SER 139 315 315 SER SER A . n B 2 140 LEU 140 316 316 LEU LEU A . n B 2 141 VAL 141 317 317 VAL VAL A . n B 2 142 ASP 142 318 318 ASP ASP A . n B 2 143 ILE 143 319 319 ILE ILE A . n B 2 144 ILE 144 320 320 ILE ILE A . n B 2 145 GLY 145 321 321 GLY GLY A . n B 2 146 ILE 146 322 322 ILE ILE A . n B 2 147 CYS 147 323 323 CYS CYS A . n B 2 148 LYS 148 324 324 LYS LYS A . n B 2 149 SER 149 325 325 SER SER A . n B 2 150 TYR 150 326 326 TYR TYR A . n B 2 151 GLU 151 327 327 GLU GLU A . n B 2 152 ASP 152 328 328 ASP ASP A . n B 2 153 ALA 153 329 329 ALA ALA A . n B 2 154 THR 154 330 330 THR THR A . n B 2 155 LYS 155 331 331 LYS LYS A . n B 2 156 ILE 156 332 332 ILE ILE A . n B 2 157 THR 157 333 333 THR THR A . n B 2 158 VAL 158 334 334 VAL VAL A . n B 2 159 ARG 159 335 335 ARG ARG A . n B 2 160 SER 160 336 336 SER SER A . n B 2 161 ASN 161 337 337 ASN ASN A . n B 2 162 ASN 162 338 338 ASN ASN A . n B 2 163 ARG 163 339 339 ARG ARG A . n B 2 164 GLU 164 340 340 GLU GLU A . n B 2 165 VAL 165 341 341 VAL VAL A . n B 2 166 ALA 166 342 342 ALA ALA A . n B 2 167 LYS 167 343 343 LYS LYS A . n B 2 168 ARG 168 344 344 ARG ARG A . n B 2 169 ASN 169 345 345 ASN ASN A . n B 2 170 ILE 170 346 346 ILE ILE A . n B 2 171 TYR 171 347 347 TYR TYR A . n B 2 172 LEU 172 348 348 LEU LEU A . n B 2 173 MET 173 349 349 MET MET A . n B 2 174 ASP 174 350 350 ASP ASP A . n B 2 175 THR 175 351 351 THR THR A . n B 2 176 SER 176 352 352 SER SER A . n B 2 177 GLY 177 353 353 GLY GLY A . n B 2 178 LYS 178 354 354 LYS LYS A . n B 2 179 VAL 179 355 355 VAL VAL A . n B 2 180 VAL 180 356 356 VAL VAL A . n B 2 181 THR 181 357 357 THR THR A . n B 2 182 ALA 182 358 358 ALA ALA A . n B 2 183 THR 183 359 359 THR THR A . n B 2 184 LEU 184 360 360 LEU LEU A . n B 2 185 TRP 185 361 361 TRP TRP A . n B 2 186 GLY 186 362 362 GLY GLY A . n B 2 187 GLU 187 363 363 GLU GLU A . n B 2 188 ASP 188 364 364 ASP ASP A . n B 2 189 ALA 189 365 365 ALA ALA A . n B 2 190 ASP 190 366 366 ASP ASP A . n B 2 191 LYS 191 367 367 LYS LYS A . n B 2 192 PHE 192 368 368 PHE PHE A . n B 2 193 ASP 193 369 369 ASP ASP A . n B 2 194 GLY 194 370 370 GLY GLY A . n B 2 195 SER 195 371 371 SER SER A . n B 2 196 ARG 196 372 372 ARG ARG A . n B 2 197 GLN 197 373 373 GLN GLN A . n B 2 198 PRO 198 374 374 PRO PRO A . n B 2 199 VAL 199 375 375 VAL VAL A . n B 2 200 LEU 200 376 376 LEU LEU A . n B 2 201 ALA 201 377 377 ALA ALA A . n B 2 202 ILE 202 378 378 ILE ILE A . n B 2 203 LYS 203 379 379 LYS LYS A . n B 2 204 GLY 204 380 380 GLY GLY A . n B 2 205 ALA 205 381 381 ALA ALA A . n B 2 206 ARG 206 382 382 ARG ARG A . n B 2 207 VAL 207 383 383 VAL VAL A . n B 2 208 SER 208 384 384 SER SER A . n B 2 209 ASP 209 385 385 ASP ASP A . n B 2 210 PHE 210 386 386 PHE PHE A . n B 2 211 GLY 211 387 387 GLY GLY A . n B 2 212 GLY 212 388 388 GLY GLY A . n B 2 213 ARG 213 389 389 ARG ARG A . n B 2 214 SER 214 390 390 SER SER A . n B 2 215 LEU 215 391 391 LEU LEU A . n B 2 216 SER 216 392 392 SER SER A . n B 2 217 VAL 217 393 393 VAL VAL A . n B 2 218 LEU 218 394 394 LEU LEU A . n B 2 219 SER 219 395 395 SER SER A . n B 2 220 SER 220 396 396 SER SER A . n B 2 221 SER 221 397 397 SER SER A . n B 2 222 THR 222 398 398 THR THR A . n B 2 223 ILE 223 399 399 ILE ILE A . n B 2 224 ILE 224 400 400 ILE ILE A . n B 2 225 ALA 225 401 401 ALA ALA A . n B 2 226 ASN 226 402 402 ASN ASN A . n B 2 227 PRO 227 403 403 PRO PRO A . n B 2 228 ASP 228 404 404 ASP ASP A . n B 2 229 ILE 229 405 405 ILE ILE A . n B 2 230 PRO 230 406 406 PRO PRO A . n B 2 231 GLU 231 407 407 GLU GLU A . n B 2 232 ALA 232 408 408 ALA ALA A . n B 2 233 TYR 233 409 409 TYR TYR A . n B 2 234 LYS 234 410 410 LYS LYS A . n B 2 235 LEU 235 411 411 LEU LEU A . n B 2 236 ARG 236 412 412 ARG ARG A . n B 2 237 GLY 237 413 413 GLY GLY A . n B 2 238 TRP 238 414 414 TRP TRP A . n B 2 239 PHE 239 415 415 PHE PHE A . n B 2 240 ASP 240 416 416 ASP ASP A . n B 2 241 ALA 241 417 417 ALA ALA A . n B 2 242 GLU 242 418 418 GLU GLU A . n B 2 243 GLY 243 419 419 GLY GLY A . n B 2 244 GLN 244 420 420 GLN GLN A . n B 2 245 ALA 245 421 ? ? ? A . n B 2 246 LEU 246 422 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 507 507 HOH HOH B . C 3 HOH 2 521 521 HOH HOH B . C 3 HOH 3 524 524 HOH HOH B . C 3 HOH 4 528 528 HOH HOH B . C 3 HOH 5 541 541 HOH HOH B . C 3 HOH 6 542 542 HOH HOH B . C 3 HOH 7 546 546 HOH HOH B . C 3 HOH 8 553 553 HOH HOH B . C 3 HOH 9 559 559 HOH HOH B . C 3 HOH 10 562 562 HOH HOH B . C 3 HOH 11 591 591 HOH HOH B . D 3 HOH 1 501 501 HOH HOH A . D 3 HOH 2 502 502 HOH HOH A . D 3 HOH 3 503 503 HOH HOH A . D 3 HOH 4 504 504 HOH HOH A . D 3 HOH 5 505 505 HOH HOH A . D 3 HOH 6 506 506 HOH HOH A . D 3 HOH 7 508 508 HOH HOH A . D 3 HOH 8 509 509 HOH HOH A . D 3 HOH 9 510 510 HOH HOH A . D 3 HOH 10 511 511 HOH HOH A . D 3 HOH 11 512 512 HOH HOH A . D 3 HOH 12 513 513 HOH HOH A . D 3 HOH 13 514 514 HOH HOH A . D 3 HOH 14 515 515 HOH HOH A . D 3 HOH 15 516 516 HOH HOH A . D 3 HOH 16 517 517 HOH HOH A . D 3 HOH 17 518 518 HOH HOH A . D 3 HOH 18 519 519 HOH HOH A . D 3 HOH 19 520 520 HOH HOH A . D 3 HOH 20 522 522 HOH HOH A . D 3 HOH 21 523 523 HOH HOH A . D 3 HOH 22 525 525 HOH HOH A . D 3 HOH 23 526 526 HOH HOH A . D 3 HOH 24 527 527 HOH HOH A . D 3 HOH 25 530 530 HOH HOH A . D 3 HOH 26 531 531 HOH HOH A . D 3 HOH 27 532 532 HOH HOH A . D 3 HOH 28 533 533 HOH HOH A . D 3 HOH 29 534 534 HOH HOH A . D 3 HOH 30 535 535 HOH HOH A . D 3 HOH 31 536 536 HOH HOH A . D 3 HOH 32 537 537 HOH HOH A . D 3 HOH 33 538 538 HOH HOH A . D 3 HOH 34 540 540 HOH HOH A . D 3 HOH 35 543 543 HOH HOH A . D 3 HOH 36 544 544 HOH HOH A . D 3 HOH 37 545 545 HOH HOH A . D 3 HOH 38 547 547 HOH HOH A . D 3 HOH 39 548 548 HOH HOH A . D 3 HOH 40 549 549 HOH HOH A . D 3 HOH 41 550 550 HOH HOH A . D 3 HOH 42 551 551 HOH HOH A . D 3 HOH 43 552 552 HOH HOH A . D 3 HOH 44 554 554 HOH HOH A . D 3 HOH 45 555 555 HOH HOH A . D 3 HOH 46 556 556 HOH HOH A . D 3 HOH 47 557 557 HOH HOH A . D 3 HOH 48 558 558 HOH HOH A . D 3 HOH 49 560 560 HOH HOH A . D 3 HOH 50 561 561 HOH HOH A . D 3 HOH 51 563 563 HOH HOH A . D 3 HOH 52 564 564 HOH HOH A . D 3 HOH 53 565 565 HOH HOH A . D 3 HOH 54 566 566 HOH HOH A . D 3 HOH 55 567 567 HOH HOH A . D 3 HOH 56 568 568 HOH HOH A . D 3 HOH 57 569 569 HOH HOH A . D 3 HOH 58 570 570 HOH HOH A . D 3 HOH 59 571 571 HOH HOH A . D 3 HOH 60 572 572 HOH HOH A . D 3 HOH 61 573 573 HOH HOH A . D 3 HOH 62 574 574 HOH HOH A . D 3 HOH 63 575 575 HOH HOH A . D 3 HOH 64 577 577 HOH HOH A . D 3 HOH 65 578 578 HOH HOH A . D 3 HOH 66 579 579 HOH HOH A . D 3 HOH 67 580 580 HOH HOH A . D 3 HOH 68 581 581 HOH HOH A . D 3 HOH 69 582 582 HOH HOH A . D 3 HOH 70 583 583 HOH HOH A . D 3 HOH 71 584 584 HOH HOH A . D 3 HOH 72 585 585 HOH HOH A . D 3 HOH 73 586 586 HOH HOH A . D 3 HOH 74 587 587 HOH HOH A . D 3 HOH 75 588 588 HOH HOH A . D 3 HOH 76 589 589 HOH HOH A . D 3 HOH 77 590 590 HOH HOH A . D 3 HOH 78 592 592 HOH HOH A . D 3 HOH 79 593 593 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-10-16 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 PHASES phasing '(FUREY)' ? 3 X-PLOR refinement . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HZ2 A LYS 324 ? ? HE21 A GLN 373 ? ? 1.27 2 1 H41 B DC 17 ? ? H2 B HOH 541 ? ? 1.33 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P B DC 14 ? ? "O5'" B DC 14 ? ? 1.675 1.593 0.082 0.010 N 2 1 "C5'" B DC 14 ? ? "C4'" B DC 14 ? ? 1.594 1.512 0.082 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 122.96 118.90 4.06 0.60 N 2 1 "C3'" B DC 11 ? ? "O3'" B DC 11 ? ? P B DC 12 ? ? 129.60 119.70 9.90 1.20 Y 3 1 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 110.15 108.30 1.85 0.30 N 4 1 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? N1 B DC 13 ? ? 116.02 108.30 7.72 0.30 N 5 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 110.91 108.30 2.61 0.30 N 6 1 "O4'" B DC 16 ? ? "C1'" B DC 16 ? ? N1 B DC 16 ? ? 111.73 108.30 3.43 0.30 N 7 1 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 117.45 108.30 9.15 0.30 N 8 1 "C3'" B DC 17 ? ? "O3'" B DC 17 ? ? P B DC 18 ? ? 129.89 119.70 10.19 1.20 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 215 ? ? -63.97 45.10 2 1 ARG A 216 ? ? 175.54 -49.01 3 1 ASP A 228 ? ? -124.42 -167.65 4 1 ASN A 239 ? ? 45.45 -94.85 5 1 ASN A 252 ? ? 86.70 -12.44 6 1 LYS A 259 ? ? 68.75 129.68 7 1 TYR A 276 ? ? -114.57 -168.53 8 1 GLU A 277 ? ? -171.91 127.43 9 1 HIS A 294 ? ? -24.56 95.49 10 1 THR A 297 ? ? -113.69 -160.36 11 1 ASP A 314 ? ? 75.86 -6.98 12 1 THR A 351 ? ? -56.54 -4.31 13 1 ALA A 417 ? ? -109.39 -86.67 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 HIS _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 293 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 HIS _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 294 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -139.15 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 LYS A 183 ? ? -11.75 2 1 GLU A 309 ? ? -10.20 3 1 ILE A 346 ? ? 10.05 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC B 13 ? ? 0.062 'SIDE CHAIN' 2 1 TYR A 256 ? ? 0.071 'SIDE CHAIN' 3 1 ARG A 344 ? ? 0.076 'SIDE CHAIN' 4 1 ARG A 372 ? ? 0.071 'SIDE CHAIN' 5 1 TYR A 409 ? ? 0.075 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 177 ? B GLY 1 2 1 Y 1 A SER 178 ? B SER 2 3 1 Y 1 A HIS 179 ? B HIS 3 4 1 Y 1 A MET 180 ? B MET 4 5 1 Y 1 A GLN 181 ? B GLN 5 6 1 Y 1 A SER 182 ? B SER 6 7 1 Y 1 A ALA 421 ? B ALA 245 8 1 Y 1 A LEU 422 ? B LEU 246 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #