HEADER HYDROLASE 23-JUL-01 1JN9 TITLE STRUCTURE OF PUTATIVE ASPARAGINASE ENCODED BY ESCHERICHIA COLI YBIK TITLE 2 GENE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE L-ASPARAGINASE; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: N-TERMINUS (RESIDUES 2-178); COMPND 5 SYNONYM: L-ASPARAGINE AMIDOHYDROLASE; COMPND 6 EC: 3.5.1.1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PUTATIVE L-ASPARAGINASE; COMPND 10 CHAIN: B, D; COMPND 11 FRAGMENT: C-TERMINUS (RESIDUES 179-321); COMPND 12 SYNONYM: L-ASPARAGINE AMIDOHYDROLASE; COMPND 13 EC: 3.5.1.1; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11D; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET11D KEYWDS NTN HYDROLASE, ASPARAGINASE, AUTOPROTEOLYSIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.BOREK,M.JASKOLSKI REVDAT 5 30-OCT-24 1JN9 1 REMARK REVDAT 4 03-APR-24 1JN9 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1JN9 1 VERSN REVDAT 2 01-APR-08 1JN9 1 JRNL VERSN REMARK REVDAT 1 09-SEP-03 1JN9 0 JRNL AUTH K.MICHALSKA,D.BOREK,A.HERNANDEZ-SANTOYO,M.JASKOLSKI JRNL TITL CRYSTAL PACKING OF PLANT-TYPE L-ASPARAGINASE FROM JRNL TITL 2 ESCHERICHIA COLI. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 64 309 2008 JRNL REFN ISSN 0907-4449 JRNL PMID 18323626 JRNL DOI 10.1107/S0907444907068072 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.BOREK,M.JASKOLSKI REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY CRYSTALLOGRAPHIC STUDIES OF REMARK 1 TITL 2 A NEW L-ASPARAGINASE ENCODED BY THE ESCHERICHIA COLI GENOME REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 56 1505 2000 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444900010076 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.A.BRANNIGAN,G.DODSON,H.J.DUGGLEBY,P.C.MOODY,J.L.SMITH, REMARK 1 AUTH 2 D.R.TOMCHICK,A.G.MURZIN REMARK 1 TITL A PROTEIN CATALYTIC FRAMEWORK WITH AN N-TERMINAL NUCLEOPHILE REMARK 1 TITL 2 IS CAPABLE OF SELF-ACTIVATION REMARK 1 REF NATURE V. 378 416 1995 REMARK 1 REFN ISSN 0028-0836 REMARK 1 DOI 10.1038/378416A0 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.XUAN,A.L.TARENTINO,B.G.GRIMWOOD,T.H.PLUMMER JR.,T.CUI, REMARK 1 AUTH 2 C.GUAN,P.VAN ROEY REMARK 1 TITL CRYSTAL STRUCTURE OF GLYCOSYLASPARAGINASE FROM REMARK 1 TITL 2 FLAVOBACTERIUM MENINGOSEPTICUM REMARK 1 REF PROTEIN SCI. V. 7 774 1998 REMARK 1 REFN ISSN 0961-8368 REMARK 1 REFERENCE 4 REMARK 1 AUTH C.OINONEN,R.TIKKANEN,J.ROUVINEN,L.PELTONEN REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF HUMAN LYSOSOMAL REMARK 1 TITL 2 ASPARTYLGLUCOSAMINIDASE REMARK 1 REF NAT.STRUCT.MOL.BIOL. V. 2 1102 1995 REMARK 1 REFN ISSN 1545-9993 REMARK 1 REFERENCE 5 REMARK 1 AUTH H.C.GUO,Q.XU,D.BUCKLEY,C.GUAN REMARK 1 TITL CRYSTAL STRUCTURES OF FLAVOBACTERIUM GLYCOSYLASPARAGINASE. REMARK 1 TITL 2 AN N-TERMINAL NUCLEOPHILE HYDROLASE ACTIVATED BY REMARK 1 TITL 3 INTRAMOLECULAR PROTEOLYSIS REMARK 1 REF J.BIOL.CHEM. V. 273 20205 1998 REMARK 1 REFN ISSN 0021-9258 REMARK 1 DOI 10.1074/JBC.273.32.20205 REMARK 1 REFERENCE 6 REMARK 1 AUTH Q.XU,D.BUCKLEY,C.GUAN,H.C.GUO REMARK 1 TITL STRUCTURAL INSIGHTS INTO THE MECHANISM OF INTRAMOLECULAR REMARK 1 TITL 2 PROTEOLYSIS REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 98 651 1999 REMARK 1 REFN ISSN 0092-8674 REMARK 1 DOI 10.1016/S0092-8674(00)80052-5 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 28994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1131 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4258 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 234 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.55000 REMARK 3 B22 (A**2) : -0.21000 REMARK 3 B33 (A**2) : -3.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.253 REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.013 ; 0.021 REMARK 3 ANGLE DISTANCE (A) : 0.024 ; 0.030 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.004 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.082 ; 0.200 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.616 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.114 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.851 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.189 ; 4.500 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 TLS PARAMETERS WERE USED. IN EACH SUBUNIT, SEVERAL C-TERMINAL REMARK 3 RESIDUES WERE NOT MODELED DUE TO POOR REMARK 3 ELECTRON DENSITY (160-178 IN CHAIN A, 313-321 IN CHAIN B, 159-178 REMARK 3 IN CHAIN C, 314-321 IN CHAIN D). REMARK 3 IT IS POSSIBLE THAT (SOME OF) THE MISSING RESIDUES IN SUBUNITS REMARK 3 ALPHA (CHAINS A,C) ARE ABSENT BECAUSE REMARK 3 OF PROTEOLYTIC EXCISION OR DEGRADATION. REMARK 3 THE N-TERMINAL MET 1 RESIDUES OF SUBUNITS ALPHA (CHAINS A AND C) REMARK 3 ARE NOT REMARK 3 PRESENT IN THE MATURE PROTEIN. REMARK 4 REMARK 4 1JN9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-AUG-01. REMARK 100 THE DEPOSITION ID IS D_1000013964. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-AUG-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-2 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29401 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.22200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: STRUCTURE OF A DIFFERENT CRYSTAL FORM AVAILABLE IN REMARK 200 THE LABORATORY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS HCL PH 8.5, 0.2 M CALCIUM REMARK 280 CHLORIDE, PEG 4000, PEG 400, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.97050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.43100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.21250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.43100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.97050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.21250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE POLYPEPTIDE CHAIN ENCODED BY THE CDNA UNDERGOES REMARK 300 AUTOPROTEOLYTIC CLEAVAGE INTO TWO SUBUNITS, ALPHA AND BETA. THE REMARK 300 BIOLOGICAL ASSEMBLY IS A HETEROTETRAMER (OR A DIMER OF HETERODIMERS) REMARK 300 CONSISTING OF TWO SUBUNITS ALPHA AND TWO SUBUNITS BETA, (ALPHA, REMARK 300 BETA)2. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 15030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -170.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 160 REMARK 465 ALA A 161 REMARK 465 THR A 162 REMARK 465 VAL A 163 REMARK 465 LEU A 164 REMARK 465 ASP A 165 REMARK 465 HIS A 166 REMARK 465 SER A 167 REMARK 465 GLY A 168 REMARK 465 ALA A 169 REMARK 465 PRO A 170 REMARK 465 LEU A 171 REMARK 465 ASP A 172 REMARK 465 GLU A 173 REMARK 465 LYS A 174 REMARK 465 GLN A 175 REMARK 465 LYS A 176 REMARK 465 MET A 177 REMARK 465 GLY A 178 REMARK 465 GLU B 313 REMARK 465 LYS B 314 REMARK 465 GLY B 315 REMARK 465 ASP B 316 REMARK 465 THR B 317 REMARK 465 VAL B 318 REMARK 465 ALA B 319 REMARK 465 THR B 320 REMARK 465 GLN B 321 REMARK 465 GLU C 159 REMARK 465 GLY C 160 REMARK 465 ALA C 161 REMARK 465 THR C 162 REMARK 465 VAL C 163 REMARK 465 LEU C 164 REMARK 465 ASP C 165 REMARK 465 HIS C 166 REMARK 465 SER C 167 REMARK 465 GLY C 168 REMARK 465 ALA C 169 REMARK 465 PRO C 170 REMARK 465 LEU C 171 REMARK 465 ASP C 172 REMARK 465 GLU C 173 REMARK 465 LYS C 174 REMARK 465 GLN C 175 REMARK 465 LYS C 176 REMARK 465 MET C 177 REMARK 465 GLY C 178 REMARK 465 LYS D 314 REMARK 465 GLY D 315 REMARK 465 ASP D 316 REMARK 465 THR D 317 REMARK 465 VAL D 318 REMARK 465 ALA D 319 REMARK 465 THR D 320 REMARK 465 GLN D 321 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP D 304 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 68 142.84 -171.87 REMARK 500 ALA B 216 -61.95 -100.46 REMARK 500 SER B 224 -79.93 -138.55 REMARK 500 ILE B 310 -52.67 -122.34 REMARK 500 LYS C 3 43.62 -89.53 REMARK 500 ALA D 216 -69.11 -101.01 REMARK 500 SER D 224 -70.92 -148.54 REMARK 500 MET D 295 119.61 -160.92 REMARK 500 ILE D 310 -53.57 -127.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 408 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 51 OD1 REMARK 620 2 ASP A 51 OD2 48.8 REMARK 620 3 HOH A 467 O 83.7 131.9 REMARK 620 4 HOH A 468 O 123.5 78.8 147.9 REMARK 620 5 HOH A 469 O 78.5 91.7 85.2 84.4 REMARK 620 6 HOH A 470 O 158.9 152.2 75.4 75.7 96.5 REMARK 620 7 GLU C 125 OE2 83.3 89.6 75.1 120.7 154.5 94.0 REMARK 620 8 GLU C 125 OE1 126.3 97.2 107.3 72.0 152.5 64.6 51.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 60 O REMARK 620 2 GLU A 61 O 79.7 REMARK 620 3 CME A 63 O 82.3 105.7 REMARK 620 4 PHE A 66 O 105.6 160.6 93.5 REMARK 620 5 ALA A 68 O 102.5 79.9 173.3 80.7 REMARK 620 6 ILE A 70 O 165.2 87.3 94.3 89.0 82.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 407 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 114 O REMARK 620 2 SER A 117 O 93.6 REMARK 620 3 HOH A 413 O 91.4 144.5 REMARK 620 4 HOH A 414 O 79.6 145.1 70.3 REMARK 620 5 HOH A 415 O 103.7 74.6 70.1 140.3 REMARK 620 6 HOH A 416 O 82.8 75.2 140.3 70.0 149.4 REMARK 620 7 HOH A 487 O 172.0 94.3 81.5 94.4 77.4 100.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 409 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 304 OD1 REMARK 620 2 ASP B 304 OD2 47.1 REMARK 620 3 HOH B 453 O 69.1 75.6 REMARK 620 4 HOH B 454 O 101.0 84.2 159.0 REMARK 620 5 ASP D 188 O 147.7 155.2 92.3 104.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU C 60 O REMARK 620 2 GLU C 61 O 78.0 REMARK 620 3 CME C 63 O 86.3 111.2 REMARK 620 4 PHE C 66 O 112.0 156.4 91.1 REMARK 620 5 ALA C 68 O 100.7 74.6 171.9 82.5 REMARK 620 6 ILE C 70 O 162.4 85.3 94.9 85.6 79.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1APY RELATED DB: PDB REMARK 900 THREE-DIMENSIONAL STRUCTURE OF HUMAN LYSOSOMAL REMARK 900 ASPARTYLGLUCOSAMINIDASE. REMARK 900 RELATED ID: 1APZ RELATED DB: PDB REMARK 900 HUMAN ASPARTYLGLUCOSAMINIDASE COMPLEX WITH REACTION PRODUCT. REMARK 900 RELATED ID: 1AYY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GLYCOSYLASPARAGINASE FROM FLAVOBACTERIUM REMARK 900 MENINGOSEPTICUM. REMARK 900 RELATED ID: 2GAC RELATED DB: PDB REMARK 900 T152C MUTANT GLYCOSYLASPARAGINASE FROM FLAVOBACTERIUM REMARK 900 MENINGOSEPTICUM REMARK 900 RELATED ID: 2GAW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF FLAVOBACTERIUM GLYCOSYLASPARAGINASE. REMARK 900 RELATED ID: 9GAA RELATED DB: PDB REMARK 900 PRECURSOR OF THE T152A MUTANT GLYCOSYLASPARAGINASE FROM REMARK 900 FLAVOBACTERIUM MENINGOSEPTICUM REMARK 900 RELATED ID: 9GAC RELATED DB: PDB REMARK 900 PRECURSOR OF THE T152C MUTANT GLYCOSYLASPARAGINASE FROM REMARK 900 FLAVOBACTERIUM MENINGOSEPTICUM REMARK 900 RELATED ID: 9GAF RELATED DB: PDB REMARK 900 PRECURSOR OF THE W11F MUTANT GLYCOSYLASPARAGINASE FROM REMARK 900 FLAVOBACTERIUM MENINGOSEPTICUM DBREF 1JN9 A 2 178 UNP P37595 ASGX_ECOLI 2 178 DBREF 1JN9 B 179 321 UNP P37595 ASGX_ECOLI 179 321 DBREF 1JN9 C 2 178 UNP P37595 ASGX_ECOLI 2 178 DBREF 1JN9 D 179 321 UNP P37595 ASGX_ECOLI 179 321 SEQADV 1JN9 CME A 63 UNP P37595 CYS 63 MODIFIED RESIDUE SEQADV 1JN9 CME C 63 UNP P37595 CYS 63 MODIFIED RESIDUE SEQRES 1 A 177 GLY LYS ALA VAL ILE ALA ILE HIS GLY GLY ALA GLY ALA SEQRES 2 A 177 ILE SER ARG ALA GLN MET SER LEU GLN GLN GLU LEU ARG SEQRES 3 A 177 TYR ILE GLU ALA LEU SER ALA ILE VAL GLU THR GLY GLN SEQRES 4 A 177 LYS MET LEU GLU ALA GLY GLU SER ALA LEU ASP VAL VAL SEQRES 5 A 177 THR GLU ALA VAL ARG LEU LEU GLU GLU CME PRO LEU PHE SEQRES 6 A 177 ASN ALA GLY ILE GLY ALA VAL PHE THR ARG ASP GLU THR SEQRES 7 A 177 HIS GLU LEU ASP ALA CYS VAL MET ASP GLY ASN THR LEU SEQRES 8 A 177 LYS ALA GLY ALA VAL ALA GLY VAL SER HIS LEU ARG ASN SEQRES 9 A 177 PRO VAL LEU ALA ALA ARG LEU VAL MET GLU GLN SER PRO SEQRES 10 A 177 HIS VAL MET MET ILE GLY GLU GLY ALA GLU ASN PHE ALA SEQRES 11 A 177 PHE ALA ARG GLY MET GLU ARG VAL SER PRO GLU ILE PHE SEQRES 12 A 177 SER THR SER LEU ARG TYR GLU GLN LEU LEU ALA ALA ARG SEQRES 13 A 177 LYS GLU GLY ALA THR VAL LEU ASP HIS SER GLY ALA PRO SEQRES 14 A 177 LEU ASP GLU LYS GLN LYS MET GLY SEQRES 1 B 143 THR VAL GLY ALA VAL ALA LEU ASP LEU ASP GLY ASN LEU SEQRES 2 B 143 ALA ALA ALA THR SER THR GLY GLY MET THR ASN LYS LEU SEQRES 3 B 143 PRO GLY ARG VAL GLY ASP SER PRO LEU VAL GLY ALA GLY SEQRES 4 B 143 CYS TYR ALA ASN ASN ALA SER VAL ALA VAL SER CYS THR SEQRES 5 B 143 GLY THR GLY GLU VAL PHE ILE ARG ALA LEU ALA ALA TYR SEQRES 6 B 143 ASP ILE ALA ALA LEU MET ASP TYR GLY GLY LEU SER LEU SEQRES 7 B 143 ALA GLU ALA CYS GLU ARG VAL VAL MET GLU LYS LEU PRO SEQRES 8 B 143 ALA LEU GLY GLY SER GLY GLY LEU ILE ALA ILE ASP HIS SEQRES 9 B 143 GLU GLY ASN VAL ALA LEU PRO PHE ASN THR GLU GLY MET SEQRES 10 B 143 TYR ARG ALA TRP GLY TYR ALA GLY ASP THR PRO THR THR SEQRES 11 B 143 GLY ILE TYR ARG GLU LYS GLY ASP THR VAL ALA THR GLN SEQRES 1 C 177 GLY LYS ALA VAL ILE ALA ILE HIS GLY GLY ALA GLY ALA SEQRES 2 C 177 ILE SER ARG ALA GLN MET SER LEU GLN GLN GLU LEU ARG SEQRES 3 C 177 TYR ILE GLU ALA LEU SER ALA ILE VAL GLU THR GLY GLN SEQRES 4 C 177 LYS MET LEU GLU ALA GLY GLU SER ALA LEU ASP VAL VAL SEQRES 5 C 177 THR GLU ALA VAL ARG LEU LEU GLU GLU CME PRO LEU PHE SEQRES 6 C 177 ASN ALA GLY ILE GLY ALA VAL PHE THR ARG ASP GLU THR SEQRES 7 C 177 HIS GLU LEU ASP ALA CYS VAL MET ASP GLY ASN THR LEU SEQRES 8 C 177 LYS ALA GLY ALA VAL ALA GLY VAL SER HIS LEU ARG ASN SEQRES 9 C 177 PRO VAL LEU ALA ALA ARG LEU VAL MET GLU GLN SER PRO SEQRES 10 C 177 HIS VAL MET MET ILE GLY GLU GLY ALA GLU ASN PHE ALA SEQRES 11 C 177 PHE ALA ARG GLY MET GLU ARG VAL SER PRO GLU ILE PHE SEQRES 12 C 177 SER THR SER LEU ARG TYR GLU GLN LEU LEU ALA ALA ARG SEQRES 13 C 177 LYS GLU GLY ALA THR VAL LEU ASP HIS SER GLY ALA PRO SEQRES 14 C 177 LEU ASP GLU LYS GLN LYS MET GLY SEQRES 1 D 143 THR VAL GLY ALA VAL ALA LEU ASP LEU ASP GLY ASN LEU SEQRES 2 D 143 ALA ALA ALA THR SER THR GLY GLY MET THR ASN LYS LEU SEQRES 3 D 143 PRO GLY ARG VAL GLY ASP SER PRO LEU VAL GLY ALA GLY SEQRES 4 D 143 CYS TYR ALA ASN ASN ALA SER VAL ALA VAL SER CYS THR SEQRES 5 D 143 GLY THR GLY GLU VAL PHE ILE ARG ALA LEU ALA ALA TYR SEQRES 6 D 143 ASP ILE ALA ALA LEU MET ASP TYR GLY GLY LEU SER LEU SEQRES 7 D 143 ALA GLU ALA CYS GLU ARG VAL VAL MET GLU LYS LEU PRO SEQRES 8 D 143 ALA LEU GLY GLY SER GLY GLY LEU ILE ALA ILE ASP HIS SEQRES 9 D 143 GLU GLY ASN VAL ALA LEU PRO PHE ASN THR GLU GLY MET SEQRES 10 D 143 TYR ARG ALA TRP GLY TYR ALA GLY ASP THR PRO THR THR SEQRES 11 D 143 GLY ILE TYR ARG GLU LYS GLY ASP THR VAL ALA THR GLN MODRES 1JN9 CME A 63 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE MODRES 1JN9 CME C 63 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE HET CME A 63 10 HET CME C 63 10 HET NA A 401 1 HET CL A 403 1 HET CA A 407 1 HET CA A 408 1 HET CA B 409 1 HET NA C 402 1 HET CL C 405 1 HET CL D 404 1 HET CL D 406 1 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION FORMUL 1 CME 2(C5 H11 N O3 S2) FORMUL 5 NA 2(NA 1+) FORMUL 6 CL 4(CL 1-) FORMUL 7 CA 3(CA 2+) FORMUL 14 HOH *234(H2 O) HELIX 1 1 SER A 21 ALA A 45 1 25 HELIX 2 2 SER A 48 GLU A 62 1 15 HELIX 3 3 ASN A 105 SER A 117 1 13 HELIX 4 4 GLY A 124 ARG A 134 1 11 HELIX 5 5 SER A 140 SER A 145 5 6 HELIX 6 6 THR A 146 GLU A 159 1 14 HELIX 7 7 THR B 232 ALA B 239 1 8 HELIX 8 8 LEU B 240 TYR B 251 1 12 HELIX 9 9 SER B 255 GLU B 266 1 12 HELIX 10 10 GLU B 266 LEU B 271 1 6 HELIX 11 11 SER C 21 ALA C 45 1 25 HELIX 12 12 SER C 48 GLU C 62 1 15 HELIX 13 13 ASN C 105 SER C 117 1 13 HELIX 14 14 GLY C 124 ARG C 134 1 11 HELIX 15 15 SER C 140 SER C 145 5 6 HELIX 16 16 THR C 146 LYS C 158 1 13 HELIX 17 17 THR D 232 ALA D 239 1 8 HELIX 18 18 LEU D 240 TYR D 251 1 12 HELIX 19 19 SER D 255 GLU D 266 1 12 HELIX 20 20 GLU D 266 LEU D 271 1 6 SHEET 1 A 9 THR B 307 TYR B 311 0 SHEET 2 A 9 GLY B 294 TYR B 301 -1 N MET B 295 O ILE B 310 SHEET 3 A 9 VAL A 5 GLY A 13 -1 N ILE A 6 O GLY B 300 SHEET 4 A 9 VAL B 180 LEU B 185 -1 N GLY B 181 O HIS A 9 SHEET 5 A 9 LEU B 191 THR B 197 -1 O ALA B 192 N ALA B 184 SHEET 6 A 9 LEU A 82 ASP A 88 -1 O ASP A 83 N THR B 197 SHEET 7 A 9 LYS A 93 VAL A 100 -1 O LYS A 93 N ASP A 88 SHEET 8 A 9 MET A 121 ILE A 123 1 N MET A 122 O ALA A 96 SHEET 9 A 9 ARG D 207 VAL D 208 -1 N VAL D 208 O MET A 121 SHEET 1 B 9 ARG B 207 VAL B 208 0 SHEET 2 B 9 MET C 121 ILE C 123 -1 O MET C 121 N VAL B 208 SHEET 3 B 9 LYS C 93 VAL C 100 1 O ALA C 96 N MET C 122 SHEET 4 B 9 LEU C 82 ASP C 88 -1 O LEU C 82 N VAL C 100 SHEET 5 B 9 LEU D 191 THR D 197 -1 O ALA D 193 N MET C 87 SHEET 6 B 9 VAL D 180 LEU D 185 -1 N VAL D 180 O SER D 196 SHEET 7 B 9 VAL C 5 GLY C 13 -1 O VAL C 5 N LEU D 185 SHEET 8 B 9 GLY D 294 TYR D 301 -1 O GLY D 294 N GLY C 13 SHEET 9 B 9 THR D 307 GLY D 309 -1 N THR D 307 O TRP D 299 SHEET 1 C 4 CYS B 218 ALA B 220 0 SHEET 2 C 4 VAL B 225 GLY B 231 -1 N VAL B 227 O TYR B 219 SHEET 3 C 4 GLY B 275 ASP B 281 -1 N GLY B 276 O THR B 230 SHEET 4 C 4 VAL B 286 ALA B 287 -1 N ALA B 287 O ALA B 279 SHEET 1 D 4 CYS D 218 ALA D 220 0 SHEET 2 D 4 VAL D 225 GLY D 231 -1 N VAL D 227 O TYR D 219 SHEET 3 D 4 GLY D 275 ASP D 281 -1 N GLY D 276 O THR D 230 SHEET 4 D 4 VAL D 286 ALA D 287 -1 N ALA D 287 O ALA D 279 LINK C GLU A 62 N CME A 63 1555 1555 1.26 LINK C CME A 63 N PRO A 64 1555 1555 1.35 LINK C GLU C 62 N CME C 63 1555 1555 1.21 LINK C CME C 63 N PRO C 64 1555 1555 1.28 LINK OD1 ASP A 51 CA CA A 408 1555 1555 2.76 LINK OD2 ASP A 51 CA CA A 408 1555 1555 2.32 LINK O LEU A 60 NA NA A 401 1555 1555 2.75 LINK O GLU A 61 NA NA A 401 1555 1555 2.48 LINK O CME A 63 NA NA A 401 1555 1555 2.24 LINK O PHE A 66 NA NA A 401 1555 1555 2.69 LINK O ALA A 68 NA NA A 401 1555 1555 2.25 LINK O ILE A 70 NA NA A 401 1555 1555 2.24 LINK O MET A 114 CA CA A 407 1555 1555 2.43 LINK O SER A 117 CA CA A 407 1555 1555 2.33 LINK CA CA A 407 O HOH A 413 1555 1555 2.47 LINK CA CA A 407 O HOH A 414 1555 1555 2.30 LINK CA CA A 407 O HOH A 415 1555 1555 2.34 LINK CA CA A 407 O HOH A 416 1555 1555 2.36 LINK CA CA A 407 O HOH A 487 1555 1555 2.23 LINK CA CA A 408 O HOH A 467 1555 1555 2.38 LINK CA CA A 408 O HOH A 468 1555 1555 2.29 LINK CA CA A 408 O HOH A 469 1555 1555 2.27 LINK CA CA A 408 O HOH A 470 1555 1555 2.08 LINK CA CA A 408 OE2 GLU C 125 1555 3545 2.44 LINK CA CA A 408 OE1 GLU C 125 1555 3545 2.58 LINK OD1 ASP B 304 CA CA B 409 1555 1555 2.55 LINK OD2 ASP B 304 CA CA B 409 1555 1555 2.84 LINK CA CA B 409 O HOH B 453 1555 1555 2.29 LINK CA CA B 409 O HOH B 454 1555 1555 2.50 LINK CA CA B 409 O ASP D 188 1555 3645 2.24 LINK O LEU C 60 NA NA C 402 1555 1555 2.64 LINK O GLU C 61 NA NA C 402 1555 1555 2.43 LINK O CME C 63 NA NA C 402 1555 1555 2.27 LINK O PHE C 66 NA NA C 402 1555 1555 2.62 LINK O ALA C 68 NA NA C 402 1555 1555 2.48 LINK O ILE C 70 NA NA C 402 1555 1555 2.23 SITE 1 AC1 6 LEU A 60 GLU A 61 CME A 63 PHE A 66 SITE 2 AC1 6 ALA A 68 ILE A 70 SITE 1 AC2 3 GLN A 23 ILE D 310 TYR D 311 SITE 1 AC3 7 MET A 114 SER A 117 HOH A 413 HOH A 414 SITE 2 AC3 7 HOH A 415 HOH A 416 HOH A 487 SITE 1 AC4 6 ASP A 51 HOH A 467 HOH A 468 HOH A 469 SITE 2 AC4 6 HOH A 470 GLU C 125 SITE 1 AC5 4 ASP B 304 HOH B 453 HOH B 454 ASP D 188 SITE 1 AC6 6 LEU C 60 GLU C 61 CME C 63 PHE C 66 SITE 2 AC6 6 ALA C 68 ILE C 70 SITE 1 AC7 3 ILE B 310 TYR B 311 LEU C 22 SITE 1 AC8 3 ALA C 14 THR D 292 GLU D 293 SITE 1 AC9 2 ARG D 262 LYS D 267 CRYST1 61.941 70.425 148.862 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016144 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014200 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006718 0.00000