HEADER SIGNALING PROTEIN 27-JUL-01 1JOE TITLE CRYSTAL STRUCTURE OF AUTOINDUCER-2 PRODUCTION PROTEIN (LUXS) FROM TITLE 2 HEAMOPHILUS INFLUENZAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AUTOINDUCER-2 PRODUCTION PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: AI-2 SYNTHESIS PROTEIN, HI0491, LUXS; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE RD; SOURCE 3 ORGANISM_TAXID: 71421; SOURCE 4 STRAIN: KW20; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST14 KEYWDS LUXS, HI0491, STRUCTURAL GENOMICS, TWINNED CRYSTAL, STRUCTURE 2 KEYWDS 2 FUNCTION PROJECT, S2F, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.C.H.CHEN,J.F.PARSONS,K.LIM,C.LEHMANN,A.TEMPCZYK,E.EISENSTEIN, AUTHOR 2 O.HERZBERG,STRUCTURE 2 FUNCTION PROJECT (S2F) REVDAT 6 07-FEB-24 1JOE 1 REMARK LINK REVDAT 5 04-OCT-17 1JOE 1 REMARK REVDAT 4 13-JUL-11 1JOE 1 VERSN REVDAT 3 24-FEB-09 1JOE 1 VERSN REVDAT 2 22-AUG-01 1JOE 1 HEADER REVDAT 1 08-AUG-01 1JOE 0 JRNL AUTH C.C.H.CHEN,J.F.PARSONS,K.LIM,C.LEHMANN,A.TEMPCZYK, JRNL AUTH 2 E.EISENSTEIN,O.HERZBERG JRNL TITL CRYSTAL STRUCTURE OF AUTOINDUCER-2 PRODUCTION PROTEIN (LUXS) JRNL TITL 2 FROM HEAMOPHILUS INFLUENZAE--A CASE OF TWINNED CRYSTAL JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 CROSS-VALIDATION METHOD : FREE R THROUGHOUT. REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.210 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.205 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 1335 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 26405 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.186 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.182 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 1133 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 21734 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4580 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 134 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 4722.5 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 0.00 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 0 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 18902 REMARK 3 NUMBER OF RESTRAINTS : 19055 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.004 REMARK 3 ANGLE DISTANCES (A) : 0.017 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.021 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.019 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.022 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.101 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.000 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.095 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228 REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TWINNING REFINEMENT CARRIED OUT FIRST REMARK 3 WITH CNS, THEN WITH SHELXL-97. FINAL TWINNING FRACTION: 0.349. REMARK 3 THE PARTIALLY REFINED DE NOVO MODEL WAS VERIFIED AGAINST 1J6W REMARK 3 WHEN THE COORDINATES WERE RELEASED. REMARK 4 REMARK 4 1JOE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-01. REMARK 100 THE DEPOSITION ID IS D_1000014003. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : CRYOGENITCALLY-COOLED REMARK 200 SI(111)DOUBLE CRYSTAL SYSTEM REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : X-GEN REMARK 200 DATA SCALING SOFTWARE : X-GEN REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30314 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.670 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08910 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.0900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.680 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD(HG) REMARK 200 SOFTWARE USED: SHELXS, MLPHARE, DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: METHOD: VAPOR DIFFUSION-HANGING DROP. REMARK 280 WELL SOLUTION: PEG 4000 25%, MAGNESIUM CHLORIDE 0.2M, TRIS REMARK 280 BUFFER 0.1M PH8.5. DROP COMPOSITION: 15UL OF WELL SOLUTION, 15 REMARK 280 UL OF PROTEIN (15MG/ML). SOAKING MEDIUM: PEG 4000 (27.5%), REMARK 280 MAGNESIUM CHLORIDE 0.2M, TRIS BUFFER 0.1M PH 8.5, MERCURY REMARK 280 ACETATE 0.5MM. SOAKING TIME: 3.5 HRS. CRYO PROTECTANT: LITHIUM REMARK 280 FORMATE 15%. , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z+1/2 REMARK 290 4555 Y,-X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.61500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.61500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -139.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -143.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 237 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 LEU A 3 REMARK 465 LEU A 4 REMARK 465 ASP A 5 REMARK 465 SER A 6 REMARK 465 PHE A 7 REMARK 465 LYS A 8 REMARK 465 GLU A 157 REMARK 465 ASP A 158 REMARK 465 LEU A 159 REMARK 465 SER A 160 REMARK 465 LEU A 161 REMARK 465 ASP A 162 REMARK 465 ASN A 163 REMARK 465 SER A 164 REMARK 465 LEU A 165 REMARK 465 LEU A 166 REMARK 465 LYS A 167 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 LEU B 3 REMARK 465 LEU B 4 REMARK 465 ASP B 5 REMARK 465 SER B 6 REMARK 465 PHE B 7 REMARK 465 LYS B 8 REMARK 465 GLU B 157 REMARK 465 ASP B 158 REMARK 465 LEU B 159 REMARK 465 SER B 160 REMARK 465 LEU B 161 REMARK 465 ASP B 162 REMARK 465 ASN B 163 REMARK 465 SER B 164 REMARK 465 LEU B 165 REMARK 465 LEU B 166 REMARK 465 LYS B 167 REMARK 465 MET C 1 REMARK 465 PRO C 2 REMARK 465 LEU C 3 REMARK 465 LEU C 4 REMARK 465 ASP C 5 REMARK 465 SER C 6 REMARK 465 PHE C 7 REMARK 465 LYS C 8 REMARK 465 GLU C 157 REMARK 465 ASP C 158 REMARK 465 LEU C 159 REMARK 465 SER C 160 REMARK 465 LEU C 161 REMARK 465 ASP C 162 REMARK 465 ASN C 163 REMARK 465 SER C 164 REMARK 465 LEU C 165 REMARK 465 LEU C 166 REMARK 465 LYS C 167 REMARK 465 MET D 1 REMARK 465 PRO D 2 REMARK 465 LEU D 3 REMARK 465 LEU D 4 REMARK 465 ASP D 5 REMARK 465 SER D 6 REMARK 465 PHE D 7 REMARK 465 LYS D 8 REMARK 465 GLU D 157 REMARK 465 ASP D 158 REMARK 465 LEU D 159 REMARK 465 SER D 160 REMARK 465 LEU D 161 REMARK 465 ASP D 162 REMARK 465 ASN D 163 REMARK 465 SER D 164 REMARK 465 LEU D 165 REMARK 465 LEU D 166 REMARK 465 LYS D 167 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 23 136.92 -171.66 REMARK 500 ASN A 69 123.44 75.15 REMARK 500 SER A 72 -2.82 -179.12 REMARK 500 ARG A 84 23.83 86.30 REMARK 500 THR A 94 53.39 -164.55 REMARK 500 GLN A 115 -72.92 -65.06 REMARK 500 SER A 119 -9.65 -157.69 REMARK 500 LEU A 123 23.48 -77.12 REMARK 500 SER A 130 43.22 -172.52 REMARK 500 GLU A 133 100.26 -52.51 REMARK 500 SER A 135 82.95 -164.72 REMARK 500 ALA A 143 -71.14 -48.53 REMARK 500 ARG B 20 117.69 -166.73 REMARK 500 ILE B 21 99.56 -51.76 REMARK 500 LYS B 29 -93.01 -75.25 REMARK 500 PRO B 43 107.22 -43.11 REMARK 500 ASN B 44 -2.40 79.43 REMARK 500 LEU B 68 -97.94 -85.29 REMARK 500 ASN B 69 69.55 -17.81 REMARK 500 THR B 94 52.46 -167.36 REMARK 500 PRO B 95 172.86 -59.67 REMARK 500 GLU B 122 -72.10 -56.33 REMARK 500 LEU B 123 71.29 -4.16 REMARK 500 GLU B 133 56.78 -107.68 REMARK 500 LYS C 23 143.09 -179.55 REMARK 500 MET C 25 -160.62 -113.47 REMARK 500 LEU C 38 80.92 -66.67 REMARK 500 ASN C 44 42.52 75.31 REMARK 500 LYS C 45 -22.11 -150.43 REMARK 500 LEU C 59 -65.91 -96.86 REMARK 500 ASP C 66 -77.67 -64.96 REMARK 500 ARG C 84 32.06 73.79 REMARK 500 PRO C 121 -81.62 -42.19 REMARK 500 GLU C 122 -8.97 -50.14 REMARK 500 LEU C 123 79.74 -65.73 REMARK 500 SER C 130 62.06 -156.17 REMARK 500 SER C 135 100.62 -164.43 REMARK 500 THR D 12 36.08 -88.83 REMARK 500 LYS D 13 0.24 -160.31 REMARK 500 LYS D 23 143.82 177.78 REMARK 500 LYS D 29 40.63 -90.30 REMARK 500 LEU D 38 71.24 -100.92 REMARK 500 ASP D 66 -87.15 -56.31 REMARK 500 ASP D 77 151.89 178.27 REMARK 500 THR D 94 60.73 -152.09 REMARK 500 PRO D 95 -177.40 -65.17 REMARK 500 GLN D 115 -70.62 -86.82 REMARK 500 PRO D 121 -72.00 -47.47 REMARK 500 GLU D 122 -4.73 -52.91 REMARK 500 LEU D 123 76.41 -65.16 REMARK 500 REMARK 500 THIS ENTRY HAS 56 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 201 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 40 O REMARK 620 2 CYS A 41 SG 79.6 REMARK 620 3 HOH A 216 O 83.4 113.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 205 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 54 NE2 REMARK 620 2 HIS A 58 NE2 74.7 REMARK 620 3 CYS A 128 SG 101.6 98.9 REMARK 620 4 HOH A 231 O 75.3 78.7 176.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG B 202 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 41 SG REMARK 620 2 GLU B 46 OE2 93.2 REMARK 620 3 HOH B 213 O 103.9 116.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 206 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 54 NE2 REMARK 620 2 HIS B 58 NE2 80.8 REMARK 620 3 CYS B 128 SG 98.1 107.9 REMARK 620 4 HOH B 236 O 99.0 84.2 160.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG C 203 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 41 SG REMARK 620 2 GLU C 46 OE1 113.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 207 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 54 NE2 REMARK 620 2 HIS C 58 NE2 96.2 REMARK 620 3 CYS C 128 SG 84.6 81.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG D 204 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 41 SG REMARK 620 2 GLU D 46 OE2 112.6 REMARK 620 3 ASN D 145 ND2 150.2 88.3 REMARK 620 4 HOH D 237 O 99.9 101.5 53.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 208 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 54 NE2 REMARK 620 2 HIS D 58 NE2 96.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG D 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 208 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1J6W RELATED DB: PDB REMARK 900 IJ6W IS THE CRYSTAL STRUCTURE OF HAEMOPHILUS INFLUENZAE LUXS REMARK 900 RELATED ID: HI0491 RELATED DB: TARGETDB DBREF 1JOE A 1 167 UNP P44007 LUXS_HAEIN 1 167 DBREF 1JOE B 1 167 UNP P44007 LUXS_HAEIN 1 167 DBREF 1JOE C 1 167 UNP P44007 LUXS_HAEIN 1 167 DBREF 1JOE D 1 167 UNP P44007 LUXS_HAEIN 1 167 SEQRES 1 A 167 MET PRO LEU LEU ASP SER PHE LYS VAL ASP HIS THR LYS SEQRES 2 A 167 MET ASN ALA PRO ALA VAL ARG ILE ALA LYS THR MET LEU SEQRES 3 A 167 THR PRO LYS GLY ASP ASN ILE THR VAL PHE ASP LEU ARG SEQRES 4 A 167 PHE CYS ILE PRO ASN LYS GLU ILE LEU SER PRO LYS GLY SEQRES 5 A 167 ILE HIS THR LEU GLU HIS LEU PHE ALA GLY PHE MET ARG SEQRES 6 A 167 ASP HIS LEU ASN GLY ASP SER ILE GLU ILE ILE ASP ILE SEQRES 7 A 167 SER PRO MET GLY CYS ARG THR GLY PHE TYR MET SER LEU SEQRES 8 A 167 ILE GLY THR PRO ASN GLU GLN LYS VAL SER GLU ALA TRP SEQRES 9 A 167 LEU ALA SER MET GLN ASP VAL LEU GLY VAL GLN ASP GLN SEQRES 10 A 167 ALA SER ILE PRO GLU LEU ASN ILE TYR GLN CYS GLY SER SEQRES 11 A 167 TYR THR GLU HIS SER LEU GLU ASP ALA HIS GLU ILE ALA SEQRES 12 A 167 LYS ASN VAL ILE ALA ARG GLY ILE GLY VAL ASN LYS ASN SEQRES 13 A 167 GLU ASP LEU SER LEU ASP ASN SER LEU LEU LYS SEQRES 1 B 167 MET PRO LEU LEU ASP SER PHE LYS VAL ASP HIS THR LYS SEQRES 2 B 167 MET ASN ALA PRO ALA VAL ARG ILE ALA LYS THR MET LEU SEQRES 3 B 167 THR PRO LYS GLY ASP ASN ILE THR VAL PHE ASP LEU ARG SEQRES 4 B 167 PHE CYS ILE PRO ASN LYS GLU ILE LEU SER PRO LYS GLY SEQRES 5 B 167 ILE HIS THR LEU GLU HIS LEU PHE ALA GLY PHE MET ARG SEQRES 6 B 167 ASP HIS LEU ASN GLY ASP SER ILE GLU ILE ILE ASP ILE SEQRES 7 B 167 SER PRO MET GLY CYS ARG THR GLY PHE TYR MET SER LEU SEQRES 8 B 167 ILE GLY THR PRO ASN GLU GLN LYS VAL SER GLU ALA TRP SEQRES 9 B 167 LEU ALA SER MET GLN ASP VAL LEU GLY VAL GLN ASP GLN SEQRES 10 B 167 ALA SER ILE PRO GLU LEU ASN ILE TYR GLN CYS GLY SER SEQRES 11 B 167 TYR THR GLU HIS SER LEU GLU ASP ALA HIS GLU ILE ALA SEQRES 12 B 167 LYS ASN VAL ILE ALA ARG GLY ILE GLY VAL ASN LYS ASN SEQRES 13 B 167 GLU ASP LEU SER LEU ASP ASN SER LEU LEU LYS SEQRES 1 C 167 MET PRO LEU LEU ASP SER PHE LYS VAL ASP HIS THR LYS SEQRES 2 C 167 MET ASN ALA PRO ALA VAL ARG ILE ALA LYS THR MET LEU SEQRES 3 C 167 THR PRO LYS GLY ASP ASN ILE THR VAL PHE ASP LEU ARG SEQRES 4 C 167 PHE CYS ILE PRO ASN LYS GLU ILE LEU SER PRO LYS GLY SEQRES 5 C 167 ILE HIS THR LEU GLU HIS LEU PHE ALA GLY PHE MET ARG SEQRES 6 C 167 ASP HIS LEU ASN GLY ASP SER ILE GLU ILE ILE ASP ILE SEQRES 7 C 167 SER PRO MET GLY CYS ARG THR GLY PHE TYR MET SER LEU SEQRES 8 C 167 ILE GLY THR PRO ASN GLU GLN LYS VAL SER GLU ALA TRP SEQRES 9 C 167 LEU ALA SER MET GLN ASP VAL LEU GLY VAL GLN ASP GLN SEQRES 10 C 167 ALA SER ILE PRO GLU LEU ASN ILE TYR GLN CYS GLY SER SEQRES 11 C 167 TYR THR GLU HIS SER LEU GLU ASP ALA HIS GLU ILE ALA SEQRES 12 C 167 LYS ASN VAL ILE ALA ARG GLY ILE GLY VAL ASN LYS ASN SEQRES 13 C 167 GLU ASP LEU SER LEU ASP ASN SER LEU LEU LYS SEQRES 1 D 167 MET PRO LEU LEU ASP SER PHE LYS VAL ASP HIS THR LYS SEQRES 2 D 167 MET ASN ALA PRO ALA VAL ARG ILE ALA LYS THR MET LEU SEQRES 3 D 167 THR PRO LYS GLY ASP ASN ILE THR VAL PHE ASP LEU ARG SEQRES 4 D 167 PHE CYS ILE PRO ASN LYS GLU ILE LEU SER PRO LYS GLY SEQRES 5 D 167 ILE HIS THR LEU GLU HIS LEU PHE ALA GLY PHE MET ARG SEQRES 6 D 167 ASP HIS LEU ASN GLY ASP SER ILE GLU ILE ILE ASP ILE SEQRES 7 D 167 SER PRO MET GLY CYS ARG THR GLY PHE TYR MET SER LEU SEQRES 8 D 167 ILE GLY THR PRO ASN GLU GLN LYS VAL SER GLU ALA TRP SEQRES 9 D 167 LEU ALA SER MET GLN ASP VAL LEU GLY VAL GLN ASP GLN SEQRES 10 D 167 ALA SER ILE PRO GLU LEU ASN ILE TYR GLN CYS GLY SER SEQRES 11 D 167 TYR THR GLU HIS SER LEU GLU ASP ALA HIS GLU ILE ALA SEQRES 12 D 167 LYS ASN VAL ILE ALA ARG GLY ILE GLY VAL ASN LYS ASN SEQRES 13 D 167 GLU ASP LEU SER LEU ASP ASN SER LEU LEU LYS HET HG A 201 1 HET ZN A 205 1 HET HG B 202 1 HET ZN B 206 1 HET HG C 203 1 HET ZN C 207 1 HET HG D 204 1 HET ZN D 208 1 HETNAM HG MERCURY (II) ION HETNAM ZN ZINC ION FORMUL 5 HG 4(HG 2+) FORMUL 6 ZN 4(ZN 2+) FORMUL 13 HOH *134(H2 O) HELIX 1 1 ASP A 10 MET A 14 5 5 HELIX 2 2 SER A 49 ASP A 66 1 18 HELIX 3 3 ASN A 96 GLU A 102 1 7 HELIX 4 4 GLU A 102 LEU A 112 1 11 HELIX 5 5 SER A 135 GLY A 150 1 16 HELIX 6 6 LYS B 51 LEU B 68 1 18 HELIX 7 7 ASN B 96 GLY B 113 1 18 HELIX 8 8 ASP B 116 ILE B 120 5 5 HELIX 9 9 SER B 135 GLY B 150 1 16 HELIX 10 10 LYS C 51 LEU C 68 1 18 HELIX 11 11 ASN C 96 VAL C 114 1 19 HELIX 12 12 ASP C 116 ILE C 120 5 5 HELIX 13 13 SER C 135 GLY C 150 1 16 HELIX 14 14 SER D 49 ASN D 69 1 21 HELIX 15 15 ASN D 96 VAL D 114 1 19 HELIX 16 16 ASP D 116 ILE D 120 5 5 HELIX 17 17 SER D 135 GLY D 150 1 16 SHEET 1 A 5 GLU A 74 PRO A 80 0 SHEET 2 A 5 GLY A 86 ILE A 92 -1 O TYR A 88 N SER A 79 SHEET 3 A 5 ASN A 32 ARG A 39 -1 N THR A 34 O LEU A 91 SHEET 4 A 5 ALA A 18 LEU A 26 -1 O ALA A 18 N ARG A 39 SHEET 5 A 5 GLY A 152 ASN A 154 1 O GLY A 152 N VAL A 19 SHEET 1 B 2 ALA B 18 VAL B 19 0 SHEET 2 B 2 GLY B 152 VAL B 153 1 O GLY B 152 N VAL B 19 SHEET 1 C 4 ILE B 21 LEU B 26 0 SHEET 2 C 4 ASN B 32 LEU B 38 -1 N ILE B 33 O MET B 25 SHEET 3 C 4 PHE B 87 ILE B 92 -1 O PHE B 87 N LEU B 38 SHEET 4 C 4 GLU B 74 PRO B 80 -1 O GLU B 74 N ILE B 92 SHEET 1 D 2 ALA C 18 VAL C 19 0 SHEET 2 D 2 GLY C 152 VAL C 153 1 O GLY C 152 N VAL C 19 SHEET 1 E 4 LYS C 23 LEU C 26 0 SHEET 2 E 4 ASN C 32 ARG C 39 -1 O ILE C 33 N MET C 25 SHEET 3 E 4 GLY C 86 ILE C 92 -1 N PHE C 87 O LEU C 38 SHEET 4 E 4 GLU C 74 PRO C 80 -1 O GLU C 74 N ILE C 92 SHEET 1 F 5 GLU D 74 PRO D 80 0 SHEET 2 F 5 GLY D 86 ILE D 92 -1 O TYR D 88 N SER D 79 SHEET 3 F 5 ASN D 32 ARG D 39 -1 N THR D 34 O LEU D 91 SHEET 4 F 5 ALA D 18 LEU D 26 -1 N ALA D 18 O ARG D 39 SHEET 5 F 5 GLY D 152 VAL D 153 1 O GLY D 152 N VAL D 19 LINK O PHE A 40 HG HG A 201 1555 1555 3.42 LINK SG CYS A 41 HG HG A 201 1555 1555 2.40 LINK NE2 HIS A 54 ZN ZN A 205 1555 1555 2.08 LINK NE2 HIS A 58 ZN ZN A 205 1555 1555 2.39 LINK SG CYS A 128 ZN ZN A 205 1555 1555 2.54 LINK HG HG A 201 O HOH A 216 1555 1555 2.35 LINK ZN ZN A 205 O HOH A 231 1555 1555 1.84 LINK SG CYS B 41 HG HG B 202 1555 1555 2.40 LINK OE2 GLU B 46 HG HG B 202 1555 1555 3.19 LINK NE2 HIS B 54 ZN ZN B 206 1555 1555 2.76 LINK NE2 HIS B 58 ZN ZN B 206 1555 1555 2.56 LINK SG CYS B 128 ZN ZN B 206 1555 1555 2.17 LINK HG HG B 202 O HOH B 213 1555 1555 2.70 LINK ZN ZN B 206 O HOH B 236 1555 1555 2.20 LINK SG CYS C 41 HG HG C 203 1555 1555 2.39 LINK OE1 GLU C 46 HG HG C 203 1555 1555 2.50 LINK NE2 HIS C 54 ZN ZN C 207 1555 1555 2.37 LINK NE2 HIS C 58 ZN ZN C 207 1555 1555 2.21 LINK SG CYS C 128 ZN ZN C 207 1555 1555 2.88 LINK SG CYS D 41 HG HG D 204 1555 1555 2.41 LINK OE2 GLU D 46 HG HG D 204 1555 1555 1.97 LINK NE2 HIS D 54 ZN ZN D 208 1555 1555 2.53 LINK NE2 HIS D 58 ZN ZN D 208 1555 1555 2.63 LINK ND2 ASN D 145 HG HG D 204 1555 1555 3.10 LINK HG HG D 204 O HOH D 237 1555 1555 1.85 CISPEP 1 ALA A 16 PRO A 17 0 -8.20 CISPEP 2 ALA B 16 PRO B 17 0 1.03 CISPEP 3 ALA C 16 PRO C 17 0 -3.34 CISPEP 4 ALA D 16 PRO D 17 0 3.52 SITE 1 AC1 3 PHE A 40 CYS A 41 HOH A 216 SITE 1 AC2 3 CYS B 41 GLU B 46 HOH B 213 SITE 1 AC3 3 CYS C 41 GLU C 46 ILE C 142 SITE 1 AC4 4 CYS D 41 GLU D 46 ASN D 145 HOH D 237 SITE 1 AC5 4 HIS A 54 HIS A 58 CYS A 128 HOH A 231 SITE 1 AC6 4 HIS B 54 HIS B 58 CYS B 128 HOH B 236 SITE 1 AC7 3 HIS C 54 HIS C 58 CYS C 128 SITE 1 AC8 3 HIS D 54 HIS D 58 CYS D 128 CRYST1 115.530 115.530 51.230 90.00 90.00 90.00 P 42 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008656 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008656 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019520 0.00000