data_1JOT
#
_entry.id 1JOT
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.389
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1JOT pdb_00001jot 10.2210/pdb1jot/pdb
WWPDB D_1000174357 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1998-12-30
2 'Structure model' 1 1 2008-03-24
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2018-03-07
5 'Structure model' 2 0 2020-07-29
6 'Structure model' 2 1 2024-02-07
7 'Structure model' 2 2 2024-04-03
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Derived calculations'
3 3 'Structure model' 'Version format compliance'
4 4 'Structure model' 'Data collection'
5 4 'Structure model' Other
6 5 'Structure model' 'Atomic model'
7 5 'Structure model' 'Data collection'
8 5 'Structure model' 'Derived calculations'
9 5 'Structure model' 'Structure summary'
10 6 'Structure model' 'Data collection'
11 6 'Structure model' 'Database references'
12 6 'Structure model' 'Structure summary'
13 7 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' diffrn_source
2 4 'Structure model' pdbx_database_status
3 5 'Structure model' atom_site
4 5 'Structure model' chem_comp
5 5 'Structure model' entity
6 5 'Structure model' entity_name_com
7 5 'Structure model' pdbx_branch_scheme
8 5 'Structure model' pdbx_chem_comp_identifier
9 5 'Structure model' pdbx_entity_branch
10 5 'Structure model' pdbx_entity_branch_descriptor
11 5 'Structure model' pdbx_entity_branch_link
12 5 'Structure model' pdbx_entity_branch_list
13 5 'Structure model' pdbx_entity_nonpoly
14 5 'Structure model' pdbx_molecule_features
15 5 'Structure model' pdbx_nonpoly_scheme
16 5 'Structure model' pdbx_struct_assembly_gen
17 5 'Structure model' struct_asym
18 5 'Structure model' struct_conn
19 5 'Structure model' struct_site
20 5 'Structure model' struct_site_gen
21 6 'Structure model' chem_comp
22 6 'Structure model' chem_comp_atom
23 6 'Structure model' chem_comp_bond
24 6 'Structure model' database_2
25 7 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_diffrn_source.source'
2 4 'Structure model' '_pdbx_database_status.process_site'
3 5 'Structure model' '_atom_site.B_iso_or_equiv'
4 5 'Structure model' '_atom_site.Cartn_x'
5 5 'Structure model' '_atom_site.Cartn_y'
6 5 'Structure model' '_atom_site.Cartn_z'
7 5 'Structure model' '_atom_site.auth_asym_id'
8 5 'Structure model' '_atom_site.auth_atom_id'
9 5 'Structure model' '_atom_site.auth_comp_id'
10 5 'Structure model' '_atom_site.auth_seq_id'
11 5 'Structure model' '_atom_site.label_asym_id'
12 5 'Structure model' '_atom_site.label_atom_id'
13 5 'Structure model' '_atom_site.label_comp_id'
14 5 'Structure model' '_atom_site.label_entity_id'
15 5 'Structure model' '_atom_site.type_symbol'
16 5 'Structure model' '_chem_comp.name'
17 5 'Structure model' '_chem_comp.type'
18 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list'
19 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
20 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
21 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
22 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
23 5 'Structure model' '_struct_conn.ptnr1_label_atom_id'
24 5 'Structure model' '_struct_conn.ptnr1_label_comp_id'
25 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
26 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
27 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
28 5 'Structure model' '_struct_conn.ptnr2_label_asym_id'
29 5 'Structure model' '_struct_conn.ptnr2_label_atom_id'
30 5 'Structure model' '_struct_conn.ptnr2_label_comp_id'
31 6 'Structure model' '_chem_comp.pdbx_synonyms'
32 6 'Structure model' '_database_2.pdbx_DOI'
33 6 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1JOT
_pdbx_database_status.recvd_initial_deposition_date 1997-12-05
_pdbx_database_status.deposit_site ?
_pdbx_database_status.process_site BNL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Lee, X.' 1
'Thompson, A.' 2
'Zhang, Z.' 3
'Hoa, T.-T.' 4
'Biesterfeldt, J.' 5
'Ogata, C.' 6
'Xu, L.' 7
'Johnston, R.A.Z.' 8
'Young, N.M.' 9
#
_citation.id primary
_citation.title
'Structure of the complex of Maclura pomifera agglutinin and the T-antigen disaccharide, Galbeta1,3GalNAc.'
_citation.journal_abbrev J.Biol.Chem.
_citation.journal_volume 273
_citation.page_first 6312
_citation.page_last 6318
_citation.year 1998
_citation.journal_id_ASTM JBCHA3
_citation.country US
_citation.journal_id_ISSN 0021-9258
_citation.journal_id_CSD 0071
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 9497359
_citation.pdbx_database_id_DOI 10.1074/jbc.273.11.6312
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Lee, X.' 1 ?
primary 'Thompson, A.' 2 ?
primary 'Zhang, Z.' 3 ?
primary 'Ton-that, H.' 4 ?
primary 'Biesterfeldt, J.' 5 ?
primary 'Ogata, C.' 6 ?
primary 'Xu, L.' 7 ?
primary 'Johnston, R.A.' 8 ?
primary 'Young, N.M.' 9 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer nat AGGLUTININ 14768.595 1 ? ? ? ?
2 polymer nat AGGLUTININ 2144.373 1 ? ? ? ?
3 branched man 'beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-galactopyranose' 383.349 1 ? ? ? ?
4 water nat water 18.015 91 ? ? ? ?
#
_entity_name_com.entity_id 3
_entity_name_com.name 'Thomsen-Friedenreich antigen'
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_target_identifier
1 'polypeptide(L)' no no
;GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTV
IRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLSL
;
;GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTV
IRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLSL
;
A ?
2 'polypeptide(L)' no no GRNGKSQSIIVGPWGDRVTN GRNGKSQSIIVGPWGDRVTN B ?
#
_pdbx_entity_nonpoly.entity_id 4
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 GLY n
1 2 VAL n
1 3 THR n
1 4 PHE n
1 5 ASP n
1 6 ASP n
1 7 GLY n
1 8 ALA n
1 9 TYR n
1 10 THR n
1 11 GLY n
1 12 ILE n
1 13 ARG n
1 14 GLU n
1 15 ILE n
1 16 ASN n
1 17 PHE n
1 18 GLU n
1 19 TYR n
1 20 ASN n
1 21 SER n
1 22 GLU n
1 23 THR n
1 24 ALA n
1 25 ILE n
1 26 GLY n
1 27 GLY n
1 28 LEU n
1 29 ARG n
1 30 VAL n
1 31 THR n
1 32 TYR n
1 33 ASP n
1 34 LEU n
1 35 ASN n
1 36 GLY n
1 37 MET n
1 38 PRO n
1 39 PHE n
1 40 VAL n
1 41 ALA n
1 42 GLU n
1 43 ASP n
1 44 HIS n
1 45 LYS n
1 46 SER n
1 47 PHE n
1 48 ILE n
1 49 THR n
1 50 GLY n
1 51 PHE n
1 52 LYS n
1 53 PRO n
1 54 VAL n
1 55 LYS n
1 56 ILE n
1 57 SER n
1 58 LEU n
1 59 GLU n
1 60 PHE n
1 61 PRO n
1 62 SER n
1 63 GLU n
1 64 TYR n
1 65 ILE n
1 66 VAL n
1 67 GLU n
1 68 VAL n
1 69 SER n
1 70 GLY n
1 71 TYR n
1 72 VAL n
1 73 GLY n
1 74 LYS n
1 75 VAL n
1 76 GLU n
1 77 GLY n
1 78 TYR n
1 79 THR n
1 80 VAL n
1 81 ILE n
1 82 ARG n
1 83 SER n
1 84 LEU n
1 85 THR n
1 86 PHE n
1 87 LYS n
1 88 THR n
1 89 ASN n
1 90 LYS n
1 91 GLN n
1 92 THR n
1 93 TYR n
1 94 GLY n
1 95 PRO n
1 96 TYR n
1 97 GLY n
1 98 VAL n
1 99 THR n
1 100 ASN n
1 101 GLY n
1 102 THR n
1 103 PRO n
1 104 PHE n
1 105 SER n
1 106 LEU n
1 107 PRO n
1 108 ILE n
1 109 GLU n
1 110 ASN n
1 111 GLY n
1 112 LEU n
1 113 ILE n
1 114 VAL n
1 115 GLY n
1 116 PHE n
1 117 LYS n
1 118 GLY n
1 119 SER n
1 120 ILE n
1 121 GLY n
1 122 TYR n
1 123 TRP n
1 124 LEU n
1 125 ASP n
1 126 TYR n
1 127 PHE n
1 128 SER n
1 129 ILE n
1 130 TYR n
1 131 LEU n
1 132 SER n
1 133 LEU n
2 1 GLY n
2 2 ARG n
2 3 ASN n
2 4 GLY n
2 5 LYS n
2 6 SER n
2 7 GLN n
2 8 SER n
2 9 ILE n
2 10 ILE n
2 11 VAL n
2 12 GLY n
2 13 PRO n
2 14 TRP n
2 15 GLY n
2 16 ASP n
2 17 ARG n
2 18 VAL n
2 19 THR n
2 20 ASN n
#
loop_
_entity_src_nat.entity_id
_entity_src_nat.pdbx_src_id
_entity_src_nat.pdbx_alt_source_flag
_entity_src_nat.pdbx_beg_seq_num
_entity_src_nat.pdbx_end_seq_num
_entity_src_nat.common_name
_entity_src_nat.pdbx_organism_scientific
_entity_src_nat.pdbx_ncbi_taxonomy_id
_entity_src_nat.genus
_entity_src_nat.species
_entity_src_nat.strain
_entity_src_nat.tissue
_entity_src_nat.tissue_fraction
_entity_src_nat.pdbx_secretion
_entity_src_nat.pdbx_fragment
_entity_src_nat.pdbx_variant
_entity_src_nat.pdbx_cell_line
_entity_src_nat.pdbx_atcc
_entity_src_nat.pdbx_cellular_location
_entity_src_nat.pdbx_organ
_entity_src_nat.pdbx_organelle
_entity_src_nat.pdbx_cell
_entity_src_nat.pdbx_plasmid_name
_entity_src_nat.pdbx_plasmid_details
_entity_src_nat.details
1 1 sample ? ? 'Osage orange' 'Maclura pomifera' 3496 Maclura ? ? ? ? ? ? ? ? ? ? SEEDS ? ? ? ?
'FROM THE SEEDS OF THE MORACEAE PLANT FAMILY'
2 1 sample ? ? 'Osage orange' 'Maclura pomifera' 3496 Maclura ? ? ? ? ? ? ? ? ? ? SEEDS ? ? ? ?
'FROM THE SEEDS OF THE MORACEAE PLANT FAMILY'
#
_pdbx_entity_branch.entity_id 3
_pdbx_entity_branch.type oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 3 DGalpb1-3DGalpNAca1-ROH 'Glycam Condensed Sequence' GMML 1.0
2 3 'WURCS=2.0/2,2,1/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5]/1-2/a3-b1' WURCS PDB2Glycan 1.1.0
3 3 '[][a-D-GalpNAc]{[(3+1)][b-D-Galp]{}}' LINUCS PDB-CARE ?
#
_pdbx_entity_branch_link.link_id 1
_pdbx_entity_branch_link.entity_id 3
_pdbx_entity_branch_link.entity_branch_list_num_1 2
_pdbx_entity_branch_link.comp_id_1 GAL
_pdbx_entity_branch_link.atom_id_1 C1
_pdbx_entity_branch_link.leaving_atom_id_1 O1
_pdbx_entity_branch_link.entity_branch_list_num_2 1
_pdbx_entity_branch_link.comp_id_2 A2G
_pdbx_entity_branch_link.atom_id_2 O3
_pdbx_entity_branch_link.leaving_atom_id_2 HO3
_pdbx_entity_branch_link.value_order sing
_pdbx_entity_branch_link.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
A2G 'D-saccharide, alpha linking' . 2-acetamido-2-deoxy-alpha-D-galactopyranose
;N-acetyl-alpha-D-galactosamine; 2-acetamido-2-deoxy-alpha-D-galactose; 2-acetamido-2-deoxy-D-galactose; 2-acetamido-2-deoxy-galactose; N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
;
'C8 H15 N O6' 221.208
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose'
'C6 H12 O6' 180.156
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A2G 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpNAca
A2G 'COMMON NAME' GMML 1.0 N-acetyl-a-D-galactopyranosamine
A2G 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-GalpNAc
A2G 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GalNAc
GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb
GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose
GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp
GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 GLY 1 1 1 GLY GLY A . n
A 1 2 VAL 2 2 2 VAL VAL A . n
A 1 3 THR 3 3 3 THR THR A . n
A 1 4 PHE 4 4 4 PHE PHE A . n
A 1 5 ASP 5 5 5 ASP ASP A . n
A 1 6 ASP 6 6 6 ASP ASP A . n
A 1 7 GLY 7 7 7 GLY GLY A . n
A 1 8 ALA 8 8 8 ALA ALA A . n
A 1 9 TYR 9 9 9 TYR TYR A . n
A 1 10 THR 10 10 10 THR THR A . n
A 1 11 GLY 11 11 11 GLY GLY A . n
A 1 12 ILE 12 12 12 ILE ILE A . n
A 1 13 ARG 13 13 13 ARG ARG A . n
A 1 14 GLU 14 14 14 GLU GLU A . n
A 1 15 ILE 15 15 15 ILE ILE A . n
A 1 16 ASN 16 16 16 ASN ASN A . n
A 1 17 PHE 17 17 17 PHE PHE A . n
A 1 18 GLU 18 18 18 GLU GLU A . n
A 1 19 TYR 19 19 19 TYR TYR A . n
A 1 20 ASN 20 20 20 ASN ASN A . n
A 1 21 SER 21 21 21 SER SER A . n
A 1 22 GLU 22 22 22 GLU GLU A . n
A 1 23 THR 23 23 23 THR THR A . n
A 1 24 ALA 24 24 24 ALA ALA A . n
A 1 25 ILE 25 25 25 ILE ILE A . n
A 1 26 GLY 26 26 26 GLY GLY A . n
A 1 27 GLY 27 27 27 GLY GLY A . n
A 1 28 LEU 28 28 28 LEU LEU A . n
A 1 29 ARG 29 29 29 ARG ARG A . n
A 1 30 VAL 30 30 30 VAL VAL A . n
A 1 31 THR 31 31 31 THR THR A . n
A 1 32 TYR 32 32 32 TYR TYR A . n
A 1 33 ASP 33 33 33 ASP ASP A . n
A 1 34 LEU 34 34 34 LEU LEU A . n
A 1 35 ASN 35 35 35 ASN ASN A . n
A 1 36 GLY 36 36 36 GLY GLY A . n
A 1 37 MET 37 37 37 MET MET A . n
A 1 38 PRO 38 38 38 PRO PRO A . n
A 1 39 PHE 39 39 39 PHE PHE A . n
A 1 40 VAL 40 40 40 VAL VAL A . n
A 1 41 ALA 41 41 41 ALA ALA A . n
A 1 42 GLU 42 42 42 GLU GLU A . n
A 1 43 ASP 43 43 43 ASP ASP A . n
A 1 44 HIS 44 44 44 HIS HIS A . n
A 1 45 LYS 45 45 45 LYS LYS A . n
A 1 46 SER 46 46 46 SER SER A . n
A 1 47 PHE 47 47 47 PHE PHE A . n
A 1 48 ILE 48 48 48 ILE ILE A . n
A 1 49 THR 49 49 49 THR THR A . n
A 1 50 GLY 50 50 50 GLY GLY A . n
A 1 51 PHE 51 51 51 PHE PHE A . n
A 1 52 LYS 52 52 52 LYS LYS A . n
A 1 53 PRO 53 53 53 PRO PRO A . n
A 1 54 VAL 54 54 54 VAL VAL A . n
A 1 55 LYS 55 55 55 LYS LYS A . n
A 1 56 ILE 56 56 56 ILE ILE A . n
A 1 57 SER 57 57 57 SER SER A . n
A 1 58 LEU 58 58 58 LEU LEU A . n
A 1 59 GLU 59 59 59 GLU GLU A . n
A 1 60 PHE 60 60 60 PHE PHE A . n
A 1 61 PRO 61 61 61 PRO PRO A . n
A 1 62 SER 62 62 62 SER SER A . n
A 1 63 GLU 63 63 63 GLU GLU A . n
A 1 64 TYR 64 64 64 TYR TYR A . n
A 1 65 ILE 65 65 65 ILE ILE A . n
A 1 66 VAL 66 66 66 VAL VAL A . n
A 1 67 GLU 67 67 67 GLU GLU A . n
A 1 68 VAL 68 68 68 VAL VAL A . n
A 1 69 SER 69 69 69 SER SER A . n
A 1 70 GLY 70 70 70 GLY GLY A . n
A 1 71 TYR 71 71 71 TYR TYR A . n
A 1 72 VAL 72 72 72 VAL VAL A . n
A 1 73 GLY 73 73 73 GLY GLY A . n
A 1 74 LYS 74 74 74 LYS LYS A . n
A 1 75 VAL 75 75 75 VAL VAL A . n
A 1 76 GLU 76 76 76 GLU GLU A . n
A 1 77 GLY 77 77 77 GLY GLY A . n
A 1 78 TYR 78 78 78 TYR TYR A . n
A 1 79 THR 79 79 79 THR THR A . n
A 1 80 VAL 80 80 80 VAL VAL A . n
A 1 81 ILE 81 81 81 ILE ILE A . n
A 1 82 ARG 82 82 82 ARG ARG A . n
A 1 83 SER 83 83 83 SER SER A . n
A 1 84 LEU 84 84 84 LEU LEU A . n
A 1 85 THR 85 85 85 THR THR A . n
A 1 86 PHE 86 86 86 PHE PHE A . n
A 1 87 LYS 87 87 87 LYS LYS A . n
A 1 88 THR 88 88 88 THR THR A . n
A 1 89 ASN 89 89 89 ASN ASN A . n
A 1 90 LYS 90 90 90 LYS LYS A . n
A 1 91 GLN 91 91 91 GLN GLN A . n
A 1 92 THR 92 92 92 THR THR A . n
A 1 93 TYR 93 93 93 TYR TYR A . n
A 1 94 GLY 94 94 94 GLY GLY A . n
A 1 95 PRO 95 95 95 PRO PRO A . n
A 1 96 TYR 96 96 96 TYR TYR A . n
A 1 97 GLY 97 97 97 GLY GLY A . n
A 1 98 VAL 98 98 98 VAL VAL A . n
A 1 99 THR 99 99 99 THR THR A . n
A 1 100 ASN 100 100 100 ASN ASN A . n
A 1 101 GLY 101 101 101 GLY GLY A . n
A 1 102 THR 102 102 102 THR THR A . n
A 1 103 PRO 103 103 103 PRO PRO A . n
A 1 104 PHE 104 104 104 PHE PHE A . n
A 1 105 SER 105 105 105 SER SER A . n
A 1 106 LEU 106 106 106 LEU LEU A . n
A 1 107 PRO 107 107 107 PRO PRO A . n
A 1 108 ILE 108 108 108 ILE ILE A . n
A 1 109 GLU 109 109 109 GLU GLU A . n
A 1 110 ASN 110 110 110 ASN ASN A . n
A 1 111 GLY 111 111 111 GLY GLY A . n
A 1 112 LEU 112 112 112 LEU LEU A . n
A 1 113 ILE 113 113 113 ILE ILE A . n
A 1 114 VAL 114 114 114 VAL VAL A . n
A 1 115 GLY 115 115 115 GLY GLY A . n
A 1 116 PHE 116 116 116 PHE PHE A . n
A 1 117 LYS 117 117 117 LYS LYS A . n
A 1 118 GLY 118 118 118 GLY GLY A . n
A 1 119 SER 119 119 119 SER SER A . n
A 1 120 ILE 120 120 120 ILE ILE A . n
A 1 121 GLY 121 121 121 GLY GLY A . n
A 1 122 TYR 122 122 122 TYR TYR A . n
A 1 123 TRP 123 123 123 TRP TRP A . n
A 1 124 LEU 124 124 124 LEU LEU A . n
A 1 125 ASP 125 125 125 ASP ASP A . n
A 1 126 TYR 126 126 126 TYR TYR A . n
A 1 127 PHE 127 127 127 PHE PHE A . n
A 1 128 SER 128 128 128 SER SER A . n
A 1 129 ILE 129 129 129 ILE ILE A . n
A 1 130 TYR 130 130 130 TYR TYR A . n
A 1 131 LEU 131 131 131 LEU LEU A . n
A 1 132 SER 132 132 132 SER SER A . n
A 1 133 LEU 133 133 133 LEU LEU A . n
B 2 1 GLY 1 2 ? ? ? B . n
B 2 2 ARG 2 3 3 ARG ARG B . n
B 2 3 ASN 3 4 4 ASN ASN B . n
B 2 4 GLY 4 5 5 GLY GLY B . n
B 2 5 LYS 5 6 6 LYS LYS B . n
B 2 6 SER 6 7 7 SER SER B . n
B 2 7 GLN 7 8 8 GLN GLN B . n
B 2 8 SER 8 9 9 SER SER B . n
B 2 9 ILE 9 10 10 ILE ILE B . n
B 2 10 ILE 10 11 11 ILE ILE B . n
B 2 11 VAL 11 12 12 VAL VAL B . n
B 2 12 GLY 12 13 13 GLY GLY B . n
B 2 13 PRO 13 14 14 PRO PRO B . n
B 2 14 TRP 14 15 15 TRP TRP B . n
B 2 15 GLY 15 16 16 GLY GLY B . n
B 2 16 ASP 16 17 17 ASP ASP B . n
B 2 17 ARG 17 18 18 ARG ARG B . n
B 2 18 VAL 18 19 ? ? ? B . n
B 2 19 THR 19 20 ? ? ? B . n
B 2 20 ASN 20 21 ? ? ? B . n
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
C 3 A2G 1 C A2G 1 ? NGA 135 n
C 3 GAL 2 C GAL 2 ? GAL 134 n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 HOH 1 136 1 HOH HOH A .
D 4 HOH 2 137 2 HOH HOH A .
D 4 HOH 3 138 3 HOH HOH A .
D 4 HOH 4 139 4 HOH HOH A .
D 4 HOH 5 140 5 HOH HOH A .
D 4 HOH 6 141 6 HOH HOH A .
D 4 HOH 7 142 7 HOH HOH A .
D 4 HOH 8 143 8 HOH HOH A .
D 4 HOH 9 144 9 HOH HOH A .
D 4 HOH 10 145 10 HOH HOH A .
D 4 HOH 11 146 11 HOH HOH A .
D 4 HOH 12 147 12 HOH HOH A .
D 4 HOH 13 148 13 HOH HOH A .
D 4 HOH 14 149 14 HOH HOH A .
D 4 HOH 15 150 15 HOH HOH A .
D 4 HOH 16 151 16 HOH HOH A .
D 4 HOH 17 152 17 HOH HOH A .
D 4 HOH 18 153 18 HOH HOH A .
D 4 HOH 19 154 20 HOH HOH A .
D 4 HOH 20 155 21 HOH HOH A .
D 4 HOH 21 156 22 HOH HOH A .
D 4 HOH 22 157 23 HOH HOH A .
D 4 HOH 23 158 25 HOH HOH A .
D 4 HOH 24 159 26 HOH HOH A .
D 4 HOH 25 160 27 HOH HOH A .
D 4 HOH 26 161 28 HOH HOH A .
D 4 HOH 27 162 29 HOH HOH A .
D 4 HOH 28 163 30 HOH HOH A .
D 4 HOH 29 164 31 HOH HOH A .
D 4 HOH 30 165 32 HOH HOH A .
D 4 HOH 31 166 33 HOH HOH A .
D 4 HOH 32 167 34 HOH HOH A .
D 4 HOH 33 168 35 HOH HOH A .
D 4 HOH 34 169 36 HOH HOH A .
D 4 HOH 35 170 39 HOH HOH A .
D 4 HOH 36 171 40 HOH HOH A .
D 4 HOH 37 172 41 HOH HOH A .
D 4 HOH 38 173 42 HOH HOH A .
D 4 HOH 39 174 43 HOH HOH A .
D 4 HOH 40 175 45 HOH HOH A .
D 4 HOH 41 176 46 HOH HOH A .
D 4 HOH 42 177 47 HOH HOH A .
D 4 HOH 43 178 48 HOH HOH A .
D 4 HOH 44 179 49 HOH HOH A .
D 4 HOH 45 180 50 HOH HOH A .
D 4 HOH 46 181 51 HOH HOH A .
D 4 HOH 47 182 52 HOH HOH A .
D 4 HOH 48 183 53 HOH HOH A .
D 4 HOH 49 184 54 HOH HOH A .
D 4 HOH 50 185 55 HOH HOH A .
D 4 HOH 51 186 56 HOH HOH A .
D 4 HOH 52 187 57 HOH HOH A .
D 4 HOH 53 188 58 HOH HOH A .
D 4 HOH 54 189 59 HOH HOH A .
D 4 HOH 55 190 60 HOH HOH A .
D 4 HOH 56 191 61 HOH HOH A .
D 4 HOH 57 192 62 HOH HOH A .
D 4 HOH 58 193 63 HOH HOH A .
D 4 HOH 59 194 64 HOH HOH A .
D 4 HOH 60 195 65 HOH HOH A .
D 4 HOH 61 196 66 HOH HOH A .
D 4 HOH 62 197 67 HOH HOH A .
D 4 HOH 63 198 68 HOH HOH A .
D 4 HOH 64 199 69 HOH HOH A .
D 4 HOH 65 200 71 HOH HOH A .
D 4 HOH 66 201 72 HOH HOH A .
D 4 HOH 67 202 73 HOH HOH A .
D 4 HOH 68 203 74 HOH HOH A .
D 4 HOH 69 204 75 HOH HOH A .
D 4 HOH 70 205 76 HOH HOH A .
D 4 HOH 71 206 77 HOH HOH A .
D 4 HOH 72 207 79 HOH HOH A .
D 4 HOH 73 208 80 HOH HOH A .
D 4 HOH 74 209 81 HOH HOH A .
D 4 HOH 75 210 82 HOH HOH A .
D 4 HOH 76 211 83 HOH HOH A .
D 4 HOH 77 212 85 HOH HOH A .
D 4 HOH 78 213 86 HOH HOH A .
D 4 HOH 79 214 87 HOH HOH A .
D 4 HOH 80 215 88 HOH HOH A .
D 4 HOH 81 216 89 HOH HOH A .
D 4 HOH 82 217 90 HOH HOH A .
D 4 HOH 83 218 91 HOH HOH A .
E 4 HOH 1 22 19 HOH HOH B .
E 4 HOH 2 23 24 HOH HOH B .
E 4 HOH 3 24 37 HOH HOH B .
E 4 HOH 4 25 38 HOH HOH B .
E 4 HOH 5 26 44 HOH HOH B .
E 4 HOH 6 27 70 HOH HOH B .
E 4 HOH 7 28 78 HOH HOH B .
E 4 HOH 8 29 84 HOH HOH B .
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 Y 1 B ARG 3 ? CG ? B ARG 2 CG
2 1 Y 1 B ARG 3 ? CD ? B ARG 2 CD
3 1 Y 1 B ARG 3 ? NE ? B ARG 2 NE
4 1 Y 1 B ARG 3 ? CZ ? B ARG 2 CZ
5 1 Y 1 B ARG 3 ? NH1 ? B ARG 2 NH1
6 1 Y 1 B ARG 3 ? NH2 ? B ARG 2 NH2
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
X-PLOR 'model building' 3.85 ? 1
X-PLOR refinement 3.85 ? 2
SOFTWARE 'data reduction' 'CAME WITH THE DETECTOR' ? 3
HAMLIN 'data scaling' . ? 4
X-PLOR phasing 3.85 ? 5
#
_cell.entry_id 1JOT
_cell.length_a 67.600
_cell.length_b 67.600
_cell.length_c 149.260
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 12
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1JOT
_symmetry.space_group_name_H-M 'P 64 2 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 181
#
_exptl.entry_id 1JOT
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.83
_exptl_crystal.density_percent_sol 56
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 4.5
_exptl_crystal_grow.pdbx_pH_range ?
_exptl_crystal_grow.pdbx_details
;CONVENTIONAL VAPOR DIFFUSION OF SITTING DROP. 1.0M OF LITHIUM SULFATE BUFFERED WITH 0.2 SODIUM CITRATE AT PH4.5 IN RESERVOIR DROPS MADE OF 15 MICROLITERS OF PROTEIN SOLUTION (10.0 MG/ML) AND EQUAL VOLUMN OF RESERVOIR SOLUTION. ROOM TEMPERATURE., vapor diffusion - sitting drop
;
#
_diffrn.id 1
_diffrn.ambient_temp 300
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'AREA DETECTOR'
_diffrn_detector.type 'XUONG-HAMLIN MULTIWIRE'
_diffrn_detector.pdbx_collection_date 1991-07
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator YES
_diffrn_radiation.pdbx_diffrn_protocol ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.5434
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type RIGAKU
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength 1.5434
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 1JOT
_reflns.observed_criterion_sigma_I 2
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 30.0
_reflns.d_resolution_high 2.20
_reflns.number_obs 10135
_reflns.number_all ?
_reflns.percent_possible_obs 93.9999
_reflns.pdbx_Rmerge_I_obs 0.036
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 7.84
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 9.6
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
_reflns_shell.d_res_high 2.20
_reflns_shell.d_res_low 3.99
_reflns_shell.percent_possible_all ?
_reflns_shell.Rmerge_I_obs ?
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs ?
_reflns_shell.pdbx_redundancy ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
#
_refine.entry_id 1JOT
_refine.ls_number_reflns_obs 9636
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 2
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 6.0
_refine.ls_d_res_high 2.20
_refine.ls_percent_reflns_obs 93.9
_refine.ls_R_factor_obs 0.172
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.172
_refine.ls_R_factor_R_free 0.222
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 7.5
_refine.ls_number_reflns_R_free 516
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model 'STRUCTURE OBTAINED FROM MAD'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details YES
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 1166
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 26
_refine_hist.number_atoms_solvent 91
_refine_hist.number_atoms_total 1283
_refine_hist.d_res_high 2.20
_refine_hist.d_res_low 6.0
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
x_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ?
x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg 1.302 ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d 29.34 ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d 0.656 ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_total_number_of_bins_used 6
_refine_ls_shell.d_res_high 2.2
_refine_ls_shell.d_res_low 2.3
_refine_ls_shell.number_reflns_R_work 1006
_refine_ls_shell.R_factor_R_work 0.236
_refine_ls_shell.percent_reflns_obs ?
_refine_ls_shell.R_factor_R_free 0.291
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 45
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
#
_database_PDB_matrix.entry_id 1JOT
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1JOT
_struct.title 'STRUCTURE OF THE LECTIN MPA COMPLEXED WITH T-ANTIGEN DISACCHARIDE'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1JOT
_struct_keywords.pdbx_keywords LECTIN
_struct_keywords.text 'MULTI-WAVELENGTH ANOMALOUS DIFFRACTION (MAD), T-ANTIGEN, LECTIN, MACLURA POMIFERA, BETA PRISM'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
E N N 4 ?
#
loop_
_struct_ref.id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.entity_id
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.pdbx_db_isoform
1 UNP LECA_MACPO 1 P18674 1
;GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTV
IRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLSL
;
?
2 UNP LEC2_MACPO 2 P18676 1 GRNGKSQSIIVGPWGDRVTN ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 1JOT A 1 ? 133 ? P18674 1 ? 133 ? 1 133
2 2 1JOT B 1 ? 20 ? P18676 1 ? 20 ? 2 21
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA,PQS
_pdbx_struct_assembly.oligomeric_details octameric
_pdbx_struct_assembly.oligomeric_count 8
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 15850 ?
1 MORE -51 ?
1 'SSA (A^2)' 23530 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2,3,4
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 4_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
3 'crystal symmetry operation' 8_555 x-y,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
4 'crystal symmetry operation' 11_555 -x+y,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
#
_struct_biol.id 1
#
_struct_conn.id covale1
_struct_conn.conn_type_id covale
_struct_conn.pdbx_leaving_atom_flag both
_struct_conn.pdbx_PDB_id ?
_struct_conn.ptnr1_label_asym_id C
_struct_conn.ptnr1_label_comp_id A2G
_struct_conn.ptnr1_label_seq_id .
_struct_conn.ptnr1_label_atom_id O3
_struct_conn.pdbx_ptnr1_label_alt_id ?
_struct_conn.pdbx_ptnr1_PDB_ins_code ?
_struct_conn.pdbx_ptnr1_standard_comp_id ?
_struct_conn.ptnr1_symmetry 1_555
_struct_conn.ptnr2_label_asym_id C
_struct_conn.ptnr2_label_comp_id GAL
_struct_conn.ptnr2_label_seq_id .
_struct_conn.ptnr2_label_atom_id C1
_struct_conn.pdbx_ptnr2_label_alt_id ?
_struct_conn.pdbx_ptnr2_PDB_ins_code ?
_struct_conn.ptnr1_auth_asym_id C
_struct_conn.ptnr1_auth_comp_id A2G
_struct_conn.ptnr1_auth_seq_id 1
_struct_conn.ptnr2_auth_asym_id C
_struct_conn.ptnr2_auth_comp_id GAL
_struct_conn.ptnr2_auth_seq_id 2
_struct_conn.ptnr2_symmetry 1_555
_struct_conn.pdbx_ptnr3_label_atom_id ?
_struct_conn.pdbx_ptnr3_label_seq_id ?
_struct_conn.pdbx_ptnr3_label_comp_id ?
_struct_conn.pdbx_ptnr3_label_asym_id ?
_struct_conn.pdbx_ptnr3_label_alt_id ?
_struct_conn.pdbx_ptnr3_PDB_ins_code ?
_struct_conn.details ?
_struct_conn.pdbx_dist_value 1.439
_struct_conn.pdbx_value_order ?
_struct_conn.pdbx_role ?
#
_struct_conn_type.id covale
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_struct_mon_prot_cis.pdbx_id
_struct_mon_prot_cis.label_comp_id
_struct_mon_prot_cis.label_seq_id
_struct_mon_prot_cis.label_asym_id
_struct_mon_prot_cis.label_alt_id
_struct_mon_prot_cis.pdbx_PDB_ins_code
_struct_mon_prot_cis.auth_comp_id
_struct_mon_prot_cis.auth_seq_id
_struct_mon_prot_cis.auth_asym_id
_struct_mon_prot_cis.pdbx_label_comp_id_2
_struct_mon_prot_cis.pdbx_label_seq_id_2
_struct_mon_prot_cis.pdbx_label_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_ins_code_2
_struct_mon_prot_cis.pdbx_auth_comp_id_2
_struct_mon_prot_cis.pdbx_auth_seq_id_2
_struct_mon_prot_cis.pdbx_auth_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_model_num
_struct_mon_prot_cis.pdbx_omega_angle
1 PHE 60 A . ? PHE 60 A PRO 61 A ? PRO 61 A 1 0.24
2 GLY 94 A . ? GLY 94 A PRO 95 A ? PRO 95 A 1 0.26
3 GLY 12 B . ? GLY 13 B PRO 13 B ? PRO 14 B 1 0.17
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
A ? 3 ?
B ? 4 ?
C ? 3 ?
D ? 2 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
A 1 2 ? anti-parallel
A 2 3 ? anti-parallel
B 1 2 ? anti-parallel
B 2 3 ? anti-parallel
B 3 4 ? anti-parallel
C 1 2 ? anti-parallel
C 2 3 ? anti-parallel
D 1 2 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
A 1 VAL A 2 ? ASP A 5 ? VAL A 2 ASP A 5
A 2 LEU A 112 ? ILE A 120 ? LEU A 112 ILE A 120
A 3 TYR A 126 ? SER A 132 ? TYR A 126 SER A 132
B 1 LYS A 52 ? SER A 57 ? LYS A 52 SER A 57
B 2 GLY A 11 ? TYR A 19 ? GLY A 11 TYR A 19
B 3 LEU A 28 ? LEU A 34 ? LEU A 28 LEU A 34
B 4 MET A 37 ? VAL A 40 ? MET A 37 VAL A 40
C 1 THR A 102 ? PRO A 107 ? THR A 102 PRO A 107
C 2 GLU A 67 ? VAL A 75 ? GLU A 67 VAL A 75
C 3 TYR A 78 ? ILE A 81 ? TYR A 78 ILE A 81
D 1 ILE A 65 ? TYR A 71 ? ILE A 65 TYR A 71
D 2 SER A 83 ? THR A 88 ? SER A 83 THR A 88
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
A 1 2 O VAL A 2 ? O VAL A 2 N ILE A 120 ? N ILE A 120
A 2 3 O LEU A 112 ? O LEU A 112 N SER A 132 ? N SER A 132
B 1 2 O LYS A 52 ? O LYS A 52 N TYR A 19 ? N TYR A 19
B 2 3 O GLY A 11 ? O GLY A 11 N ASP A 33 ? N ASP A 33
B 3 4 O TYR A 32 ? O TYR A 32 N PHE A 39 ? N PHE A 39
C 1 2 O THR A 102 ? O THR A 102 N VAL A 72 ? N VAL A 72
C 2 3 O GLY A 73 ? O GLY A 73 N VAL A 80 ? N VAL A 80
D 1 2 O VAL A 66 ? O VAL A 66 N LYS A 87 ? N LYS A 87
#
_pdbx_validate_torsion.id 1
_pdbx_validate_torsion.PDB_model_num 1
_pdbx_validate_torsion.auth_comp_id THR
_pdbx_validate_torsion.auth_asym_id A
_pdbx_validate_torsion.auth_seq_id 23
_pdbx_validate_torsion.PDB_ins_code ?
_pdbx_validate_torsion.label_alt_id ?
_pdbx_validate_torsion.phi -113.23
_pdbx_validate_torsion.psi -91.99
#
_pdbx_molecule_features.prd_id PRD_900084
_pdbx_molecule_features.name 'Thomsen-Friedenreich antigen'
_pdbx_molecule_features.type Oligosaccharide
_pdbx_molecule_features.class Antigen
_pdbx_molecule_features.details oligosaccharide
#
_pdbx_molecule.instance_id 1
_pdbx_molecule.prd_id PRD_900084
_pdbx_molecule.asym_id C
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 B GLY 2 ? B GLY 1
2 1 Y 1 B VAL 19 ? B VAL 18
3 1 Y 1 B THR 20 ? B THR 19
4 1 Y 1 B ASN 21 ? B ASN 20
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
A2G O5 O N N 1
A2G C1 C N S 2
A2G O1 O N N 3
A2G C2 C N R 4
A2G N2 N N N 5
A2G C3 C N R 6
A2G O3 O N N 7
A2G C4 C N R 8
A2G O4 O N N 9
A2G C5 C N R 10
A2G C6 C N N 11
A2G O6 O N N 12
A2G C7 C N N 13
A2G O7 O N N 14
A2G C8 C N N 15
A2G H1 H N N 16
A2G HO1 H N N 17
A2G H2 H N N 18
A2G HN2 H N N 19
A2G H3 H N N 20
A2G HO3 H N N 21
A2G H4 H N N 22
A2G HO4 H N N 23
A2G H5 H N N 24
A2G H61 H N N 25
A2G H81 H N N 26
A2G H82 H N N 27
A2G H83 H N N 28
A2G H62 H N N 29
A2G HO6 H N N 30
ALA N N N N 31
ALA CA C N S 32
ALA C C N N 33
ALA O O N N 34
ALA CB C N N 35
ALA OXT O N N 36
ALA H H N N 37
ALA H2 H N N 38
ALA HA H N N 39
ALA HB1 H N N 40
ALA HB2 H N N 41
ALA HB3 H N N 42
ALA HXT H N N 43
ARG N N N N 44
ARG CA C N S 45
ARG C C N N 46
ARG O O N N 47
ARG CB C N N 48
ARG CG C N N 49
ARG CD C N N 50
ARG NE N N N 51
ARG CZ C N N 52
ARG NH1 N N N 53
ARG NH2 N N N 54
ARG OXT O N N 55
ARG H H N N 56
ARG H2 H N N 57
ARG HA H N N 58
ARG HB2 H N N 59
ARG HB3 H N N 60
ARG HG2 H N N 61
ARG HG3 H N N 62
ARG HD2 H N N 63
ARG HD3 H N N 64
ARG HE H N N 65
ARG HH11 H N N 66
ARG HH12 H N N 67
ARG HH21 H N N 68
ARG HH22 H N N 69
ARG HXT H N N 70
ASN N N N N 71
ASN CA C N S 72
ASN C C N N 73
ASN O O N N 74
ASN CB C N N 75
ASN CG C N N 76
ASN OD1 O N N 77
ASN ND2 N N N 78
ASN OXT O N N 79
ASN H H N N 80
ASN H2 H N N 81
ASN HA H N N 82
ASN HB2 H N N 83
ASN HB3 H N N 84
ASN HD21 H N N 85
ASN HD22 H N N 86
ASN HXT H N N 87
ASP N N N N 88
ASP CA C N S 89
ASP C C N N 90
ASP O O N N 91
ASP CB C N N 92
ASP CG C N N 93
ASP OD1 O N N 94
ASP OD2 O N N 95
ASP OXT O N N 96
ASP H H N N 97
ASP H2 H N N 98
ASP HA H N N 99
ASP HB2 H N N 100
ASP HB3 H N N 101
ASP HD2 H N N 102
ASP HXT H N N 103
GAL C1 C N R 104
GAL C2 C N R 105
GAL C3 C N S 106
GAL C4 C N R 107
GAL C5 C N R 108
GAL C6 C N N 109
GAL O1 O N N 110
GAL O2 O N N 111
GAL O3 O N N 112
GAL O4 O N N 113
GAL O5 O N N 114
GAL O6 O N N 115
GAL H1 H N N 116
GAL H2 H N N 117
GAL H3 H N N 118
GAL H4 H N N 119
GAL H5 H N N 120
GAL H61 H N N 121
GAL H62 H N N 122
GAL HO1 H N N 123
GAL HO2 H N N 124
GAL HO3 H N N 125
GAL HO4 H N N 126
GAL HO6 H N N 127
GLN N N N N 128
GLN CA C N S 129
GLN C C N N 130
GLN O O N N 131
GLN CB C N N 132
GLN CG C N N 133
GLN CD C N N 134
GLN OE1 O N N 135
GLN NE2 N N N 136
GLN OXT O N N 137
GLN H H N N 138
GLN H2 H N N 139
GLN HA H N N 140
GLN HB2 H N N 141
GLN HB3 H N N 142
GLN HG2 H N N 143
GLN HG3 H N N 144
GLN HE21 H N N 145
GLN HE22 H N N 146
GLN HXT H N N 147
GLU N N N N 148
GLU CA C N S 149
GLU C C N N 150
GLU O O N N 151
GLU CB C N N 152
GLU CG C N N 153
GLU CD C N N 154
GLU OE1 O N N 155
GLU OE2 O N N 156
GLU OXT O N N 157
GLU H H N N 158
GLU H2 H N N 159
GLU HA H N N 160
GLU HB2 H N N 161
GLU HB3 H N N 162
GLU HG2 H N N 163
GLU HG3 H N N 164
GLU HE2 H N N 165
GLU HXT H N N 166
GLY N N N N 167
GLY CA C N N 168
GLY C C N N 169
GLY O O N N 170
GLY OXT O N N 171
GLY H H N N 172
GLY H2 H N N 173
GLY HA2 H N N 174
GLY HA3 H N N 175
GLY HXT H N N 176
HIS N N N N 177
HIS CA C N S 178
HIS C C N N 179
HIS O O N N 180
HIS CB C N N 181
HIS CG C Y N 182
HIS ND1 N Y N 183
HIS CD2 C Y N 184
HIS CE1 C Y N 185
HIS NE2 N Y N 186
HIS OXT O N N 187
HIS H H N N 188
HIS H2 H N N 189
HIS HA H N N 190
HIS HB2 H N N 191
HIS HB3 H N N 192
HIS HD1 H N N 193
HIS HD2 H N N 194
HIS HE1 H N N 195
HIS HE2 H N N 196
HIS HXT H N N 197
HOH O O N N 198
HOH H1 H N N 199
HOH H2 H N N 200
ILE N N N N 201
ILE CA C N S 202
ILE C C N N 203
ILE O O N N 204
ILE CB C N S 205
ILE CG1 C N N 206
ILE CG2 C N N 207
ILE CD1 C N N 208
ILE OXT O N N 209
ILE H H N N 210
ILE H2 H N N 211
ILE HA H N N 212
ILE HB H N N 213
ILE HG12 H N N 214
ILE HG13 H N N 215
ILE HG21 H N N 216
ILE HG22 H N N 217
ILE HG23 H N N 218
ILE HD11 H N N 219
ILE HD12 H N N 220
ILE HD13 H N N 221
ILE HXT H N N 222
LEU N N N N 223
LEU CA C N S 224
LEU C C N N 225
LEU O O N N 226
LEU CB C N N 227
LEU CG C N N 228
LEU CD1 C N N 229
LEU CD2 C N N 230
LEU OXT O N N 231
LEU H H N N 232
LEU H2 H N N 233
LEU HA H N N 234
LEU HB2 H N N 235
LEU HB3 H N N 236
LEU HG H N N 237
LEU HD11 H N N 238
LEU HD12 H N N 239
LEU HD13 H N N 240
LEU HD21 H N N 241
LEU HD22 H N N 242
LEU HD23 H N N 243
LEU HXT H N N 244
LYS N N N N 245
LYS CA C N S 246
LYS C C N N 247
LYS O O N N 248
LYS CB C N N 249
LYS CG C N N 250
LYS CD C N N 251
LYS CE C N N 252
LYS NZ N N N 253
LYS OXT O N N 254
LYS H H N N 255
LYS H2 H N N 256
LYS HA H N N 257
LYS HB2 H N N 258
LYS HB3 H N N 259
LYS HG2 H N N 260
LYS HG3 H N N 261
LYS HD2 H N N 262
LYS HD3 H N N 263
LYS HE2 H N N 264
LYS HE3 H N N 265
LYS HZ1 H N N 266
LYS HZ2 H N N 267
LYS HZ3 H N N 268
LYS HXT H N N 269
MET N N N N 270
MET CA C N S 271
MET C C N N 272
MET O O N N 273
MET CB C N N 274
MET CG C N N 275
MET SD S N N 276
MET CE C N N 277
MET OXT O N N 278
MET H H N N 279
MET H2 H N N 280
MET HA H N N 281
MET HB2 H N N 282
MET HB3 H N N 283
MET HG2 H N N 284
MET HG3 H N N 285
MET HE1 H N N 286
MET HE2 H N N 287
MET HE3 H N N 288
MET HXT H N N 289
PHE N N N N 290
PHE CA C N S 291
PHE C C N N 292
PHE O O N N 293
PHE CB C N N 294
PHE CG C Y N 295
PHE CD1 C Y N 296
PHE CD2 C Y N 297
PHE CE1 C Y N 298
PHE CE2 C Y N 299
PHE CZ C Y N 300
PHE OXT O N N 301
PHE H H N N 302
PHE H2 H N N 303
PHE HA H N N 304
PHE HB2 H N N 305
PHE HB3 H N N 306
PHE HD1 H N N 307
PHE HD2 H N N 308
PHE HE1 H N N 309
PHE HE2 H N N 310
PHE HZ H N N 311
PHE HXT H N N 312
PRO N N N N 313
PRO CA C N S 314
PRO C C N N 315
PRO O O N N 316
PRO CB C N N 317
PRO CG C N N 318
PRO CD C N N 319
PRO OXT O N N 320
PRO H H N N 321
PRO HA H N N 322
PRO HB2 H N N 323
PRO HB3 H N N 324
PRO HG2 H N N 325
PRO HG3 H N N 326
PRO HD2 H N N 327
PRO HD3 H N N 328
PRO HXT H N N 329
SER N N N N 330
SER CA C N S 331
SER C C N N 332
SER O O N N 333
SER CB C N N 334
SER OG O N N 335
SER OXT O N N 336
SER H H N N 337
SER H2 H N N 338
SER HA H N N 339
SER HB2 H N N 340
SER HB3 H N N 341
SER HG H N N 342
SER HXT H N N 343
THR N N N N 344
THR CA C N S 345
THR C C N N 346
THR O O N N 347
THR CB C N R 348
THR OG1 O N N 349
THR CG2 C N N 350
THR OXT O N N 351
THR H H N N 352
THR H2 H N N 353
THR HA H N N 354
THR HB H N N 355
THR HG1 H N N 356
THR HG21 H N N 357
THR HG22 H N N 358
THR HG23 H N N 359
THR HXT H N N 360
TRP N N N N 361
TRP CA C N S 362
TRP C C N N 363
TRP O O N N 364
TRP CB C N N 365
TRP CG C Y N 366
TRP CD1 C Y N 367
TRP CD2 C Y N 368
TRP NE1 N Y N 369
TRP CE2 C Y N 370
TRP CE3 C Y N 371
TRP CZ2 C Y N 372
TRP CZ3 C Y N 373
TRP CH2 C Y N 374
TRP OXT O N N 375
TRP H H N N 376
TRP H2 H N N 377
TRP HA H N N 378
TRP HB2 H N N 379
TRP HB3 H N N 380
TRP HD1 H N N 381
TRP HE1 H N N 382
TRP HE3 H N N 383
TRP HZ2 H N N 384
TRP HZ3 H N N 385
TRP HH2 H N N 386
TRP HXT H N N 387
TYR N N N N 388
TYR CA C N S 389
TYR C C N N 390
TYR O O N N 391
TYR CB C N N 392
TYR CG C Y N 393
TYR CD1 C Y N 394
TYR CD2 C Y N 395
TYR CE1 C Y N 396
TYR CE2 C Y N 397
TYR CZ C Y N 398
TYR OH O N N 399
TYR OXT O N N 400
TYR H H N N 401
TYR H2 H N N 402
TYR HA H N N 403
TYR HB2 H N N 404
TYR HB3 H N N 405
TYR HD1 H N N 406
TYR HD2 H N N 407
TYR HE1 H N N 408
TYR HE2 H N N 409
TYR HH H N N 410
TYR HXT H N N 411
VAL N N N N 412
VAL CA C N S 413
VAL C C N N 414
VAL O O N N 415
VAL CB C N N 416
VAL CG1 C N N 417
VAL CG2 C N N 418
VAL OXT O N N 419
VAL H H N N 420
VAL H2 H N N 421
VAL HA H N N 422
VAL HB H N N 423
VAL HG11 H N N 424
VAL HG12 H N N 425
VAL HG13 H N N 426
VAL HG21 H N N 427
VAL HG22 H N N 428
VAL HG23 H N N 429
VAL HXT H N N 430
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A2G O5 C5 sing N N 1
A2G C1 O5 sing N N 2
A2G C1 C2 sing N N 3
A2G C1 H1 sing N N 4
A2G O1 C1 sing N N 5
A2G O1 HO1 sing N N 6
A2G C2 C3 sing N N 7
A2G C2 H2 sing N N 8
A2G N2 C2 sing N N 9
A2G N2 HN2 sing N N 10
A2G C3 C4 sing N N 11
A2G C3 O3 sing N N 12
A2G C3 H3 sing N N 13
A2G O3 HO3 sing N N 14
A2G C4 O4 sing N N 15
A2G C4 H4 sing N N 16
A2G O4 HO4 sing N N 17
A2G C5 C4 sing N N 18
A2G C5 C6 sing N N 19
A2G C5 H5 sing N N 20
A2G C6 O6 sing N N 21
A2G C6 H61 sing N N 22
A2G C7 N2 sing N N 23
A2G O7 C7 doub N N 24
A2G C8 C7 sing N N 25
A2G C8 H81 sing N N 26
A2G C8 H82 sing N N 27
A2G C8 H83 sing N N 28
A2G C6 H62 sing N N 29
A2G O6 HO6 sing N N 30
ALA N CA sing N N 31
ALA N H sing N N 32
ALA N H2 sing N N 33
ALA CA C sing N N 34
ALA CA CB sing N N 35
ALA CA HA sing N N 36
ALA C O doub N N 37
ALA C OXT sing N N 38
ALA CB HB1 sing N N 39
ALA CB HB2 sing N N 40
ALA CB HB3 sing N N 41
ALA OXT HXT sing N N 42
ARG N CA sing N N 43
ARG N H sing N N 44
ARG N H2 sing N N 45
ARG CA C sing N N 46
ARG CA CB sing N N 47
ARG CA HA sing N N 48
ARG C O doub N N 49
ARG C OXT sing N N 50
ARG CB CG sing N N 51
ARG CB HB2 sing N N 52
ARG CB HB3 sing N N 53
ARG CG CD sing N N 54
ARG CG HG2 sing N N 55
ARG CG HG3 sing N N 56
ARG CD NE sing N N 57
ARG CD HD2 sing N N 58
ARG CD HD3 sing N N 59
ARG NE CZ sing N N 60
ARG NE HE sing N N 61
ARG CZ NH1 sing N N 62
ARG CZ NH2 doub N N 63
ARG NH1 HH11 sing N N 64
ARG NH1 HH12 sing N N 65
ARG NH2 HH21 sing N N 66
ARG NH2 HH22 sing N N 67
ARG OXT HXT sing N N 68
ASN N CA sing N N 69
ASN N H sing N N 70
ASN N H2 sing N N 71
ASN CA C sing N N 72
ASN CA CB sing N N 73
ASN CA HA sing N N 74
ASN C O doub N N 75
ASN C OXT sing N N 76
ASN CB CG sing N N 77
ASN CB HB2 sing N N 78
ASN CB HB3 sing N N 79
ASN CG OD1 doub N N 80
ASN CG ND2 sing N N 81
ASN ND2 HD21 sing N N 82
ASN ND2 HD22 sing N N 83
ASN OXT HXT sing N N 84
ASP N CA sing N N 85
ASP N H sing N N 86
ASP N H2 sing N N 87
ASP CA C sing N N 88
ASP CA CB sing N N 89
ASP CA HA sing N N 90
ASP C O doub N N 91
ASP C OXT sing N N 92
ASP CB CG sing N N 93
ASP CB HB2 sing N N 94
ASP CB HB3 sing N N 95
ASP CG OD1 doub N N 96
ASP CG OD2 sing N N 97
ASP OD2 HD2 sing N N 98
ASP OXT HXT sing N N 99
GAL C1 C2 sing N N 100
GAL C1 O1 sing N N 101
GAL C1 O5 sing N N 102
GAL C1 H1 sing N N 103
GAL C2 C3 sing N N 104
GAL C2 O2 sing N N 105
GAL C2 H2 sing N N 106
GAL C3 C4 sing N N 107
GAL C3 O3 sing N N 108
GAL C3 H3 sing N N 109
GAL C4 C5 sing N N 110
GAL C4 O4 sing N N 111
GAL C4 H4 sing N N 112
GAL C5 C6 sing N N 113
GAL C5 O5 sing N N 114
GAL C5 H5 sing N N 115
GAL C6 O6 sing N N 116
GAL C6 H61 sing N N 117
GAL C6 H62 sing N N 118
GAL O1 HO1 sing N N 119
GAL O2 HO2 sing N N 120
GAL O3 HO3 sing N N 121
GAL O4 HO4 sing N N 122
GAL O6 HO6 sing N N 123
GLN N CA sing N N 124
GLN N H sing N N 125
GLN N H2 sing N N 126
GLN CA C sing N N 127
GLN CA CB sing N N 128
GLN CA HA sing N N 129
GLN C O doub N N 130
GLN C OXT sing N N 131
GLN CB CG sing N N 132
GLN CB HB2 sing N N 133
GLN CB HB3 sing N N 134
GLN CG CD sing N N 135
GLN CG HG2 sing N N 136
GLN CG HG3 sing N N 137
GLN CD OE1 doub N N 138
GLN CD NE2 sing N N 139
GLN NE2 HE21 sing N N 140
GLN NE2 HE22 sing N N 141
GLN OXT HXT sing N N 142
GLU N CA sing N N 143
GLU N H sing N N 144
GLU N H2 sing N N 145
GLU CA C sing N N 146
GLU CA CB sing N N 147
GLU CA HA sing N N 148
GLU C O doub N N 149
GLU C OXT sing N N 150
GLU CB CG sing N N 151
GLU CB HB2 sing N N 152
GLU CB HB3 sing N N 153
GLU CG CD sing N N 154
GLU CG HG2 sing N N 155
GLU CG HG3 sing N N 156
GLU CD OE1 doub N N 157
GLU CD OE2 sing N N 158
GLU OE2 HE2 sing N N 159
GLU OXT HXT sing N N 160
GLY N CA sing N N 161
GLY N H sing N N 162
GLY N H2 sing N N 163
GLY CA C sing N N 164
GLY CA HA2 sing N N 165
GLY CA HA3 sing N N 166
GLY C O doub N N 167
GLY C OXT sing N N 168
GLY OXT HXT sing N N 169
HIS N CA sing N N 170
HIS N H sing N N 171
HIS N H2 sing N N 172
HIS CA C sing N N 173
HIS CA CB sing N N 174
HIS CA HA sing N N 175
HIS C O doub N N 176
HIS C OXT sing N N 177
HIS CB CG sing N N 178
HIS CB HB2 sing N N 179
HIS CB HB3 sing N N 180
HIS CG ND1 sing Y N 181
HIS CG CD2 doub Y N 182
HIS ND1 CE1 doub Y N 183
HIS ND1 HD1 sing N N 184
HIS CD2 NE2 sing Y N 185
HIS CD2 HD2 sing N N 186
HIS CE1 NE2 sing Y N 187
HIS CE1 HE1 sing N N 188
HIS NE2 HE2 sing N N 189
HIS OXT HXT sing N N 190
HOH O H1 sing N N 191
HOH O H2 sing N N 192
ILE N CA sing N N 193
ILE N H sing N N 194
ILE N H2 sing N N 195
ILE CA C sing N N 196
ILE CA CB sing N N 197
ILE CA HA sing N N 198
ILE C O doub N N 199
ILE C OXT sing N N 200
ILE CB CG1 sing N N 201
ILE CB CG2 sing N N 202
ILE CB HB sing N N 203
ILE CG1 CD1 sing N N 204
ILE CG1 HG12 sing N N 205
ILE CG1 HG13 sing N N 206
ILE CG2 HG21 sing N N 207
ILE CG2 HG22 sing N N 208
ILE CG2 HG23 sing N N 209
ILE CD1 HD11 sing N N 210
ILE CD1 HD12 sing N N 211
ILE CD1 HD13 sing N N 212
ILE OXT HXT sing N N 213
LEU N CA sing N N 214
LEU N H sing N N 215
LEU N H2 sing N N 216
LEU CA C sing N N 217
LEU CA CB sing N N 218
LEU CA HA sing N N 219
LEU C O doub N N 220
LEU C OXT sing N N 221
LEU CB CG sing N N 222
LEU CB HB2 sing N N 223
LEU CB HB3 sing N N 224
LEU CG CD1 sing N N 225
LEU CG CD2 sing N N 226
LEU CG HG sing N N 227
LEU CD1 HD11 sing N N 228
LEU CD1 HD12 sing N N 229
LEU CD1 HD13 sing N N 230
LEU CD2 HD21 sing N N 231
LEU CD2 HD22 sing N N 232
LEU CD2 HD23 sing N N 233
LEU OXT HXT sing N N 234
LYS N CA sing N N 235
LYS N H sing N N 236
LYS N H2 sing N N 237
LYS CA C sing N N 238
LYS CA CB sing N N 239
LYS CA HA sing N N 240
LYS C O doub N N 241
LYS C OXT sing N N 242
LYS CB CG sing N N 243
LYS CB HB2 sing N N 244
LYS CB HB3 sing N N 245
LYS CG CD sing N N 246
LYS CG HG2 sing N N 247
LYS CG HG3 sing N N 248
LYS CD CE sing N N 249
LYS CD HD2 sing N N 250
LYS CD HD3 sing N N 251
LYS CE NZ sing N N 252
LYS CE HE2 sing N N 253
LYS CE HE3 sing N N 254
LYS NZ HZ1 sing N N 255
LYS NZ HZ2 sing N N 256
LYS NZ HZ3 sing N N 257
LYS OXT HXT sing N N 258
MET N CA sing N N 259
MET N H sing N N 260
MET N H2 sing N N 261
MET CA C sing N N 262
MET CA CB sing N N 263
MET CA HA sing N N 264
MET C O doub N N 265
MET C OXT sing N N 266
MET CB CG sing N N 267
MET CB HB2 sing N N 268
MET CB HB3 sing N N 269
MET CG SD sing N N 270
MET CG HG2 sing N N 271
MET CG HG3 sing N N 272
MET SD CE sing N N 273
MET CE HE1 sing N N 274
MET CE HE2 sing N N 275
MET CE HE3 sing N N 276
MET OXT HXT sing N N 277
PHE N CA sing N N 278
PHE N H sing N N 279
PHE N H2 sing N N 280
PHE CA C sing N N 281
PHE CA CB sing N N 282
PHE CA HA sing N N 283
PHE C O doub N N 284
PHE C OXT sing N N 285
PHE CB CG sing N N 286
PHE CB HB2 sing N N 287
PHE CB HB3 sing N N 288
PHE CG CD1 doub Y N 289
PHE CG CD2 sing Y N 290
PHE CD1 CE1 sing Y N 291
PHE CD1 HD1 sing N N 292
PHE CD2 CE2 doub Y N 293
PHE CD2 HD2 sing N N 294
PHE CE1 CZ doub Y N 295
PHE CE1 HE1 sing N N 296
PHE CE2 CZ sing Y N 297
PHE CE2 HE2 sing N N 298
PHE CZ HZ sing N N 299
PHE OXT HXT sing N N 300
PRO N CA sing N N 301
PRO N CD sing N N 302
PRO N H sing N N 303
PRO CA C sing N N 304
PRO CA CB sing N N 305
PRO CA HA sing N N 306
PRO C O doub N N 307
PRO C OXT sing N N 308
PRO CB CG sing N N 309
PRO CB HB2 sing N N 310
PRO CB HB3 sing N N 311
PRO CG CD sing N N 312
PRO CG HG2 sing N N 313
PRO CG HG3 sing N N 314
PRO CD HD2 sing N N 315
PRO CD HD3 sing N N 316
PRO OXT HXT sing N N 317
SER N CA sing N N 318
SER N H sing N N 319
SER N H2 sing N N 320
SER CA C sing N N 321
SER CA CB sing N N 322
SER CA HA sing N N 323
SER C O doub N N 324
SER C OXT sing N N 325
SER CB OG sing N N 326
SER CB HB2 sing N N 327
SER CB HB3 sing N N 328
SER OG HG sing N N 329
SER OXT HXT sing N N 330
THR N CA sing N N 331
THR N H sing N N 332
THR N H2 sing N N 333
THR CA C sing N N 334
THR CA CB sing N N 335
THR CA HA sing N N 336
THR C O doub N N 337
THR C OXT sing N N 338
THR CB OG1 sing N N 339
THR CB CG2 sing N N 340
THR CB HB sing N N 341
THR OG1 HG1 sing N N 342
THR CG2 HG21 sing N N 343
THR CG2 HG22 sing N N 344
THR CG2 HG23 sing N N 345
THR OXT HXT sing N N 346
TRP N CA sing N N 347
TRP N H sing N N 348
TRP N H2 sing N N 349
TRP CA C sing N N 350
TRP CA CB sing N N 351
TRP CA HA sing N N 352
TRP C O doub N N 353
TRP C OXT sing N N 354
TRP CB CG sing N N 355
TRP CB HB2 sing N N 356
TRP CB HB3 sing N N 357
TRP CG CD1 doub Y N 358
TRP CG CD2 sing Y N 359
TRP CD1 NE1 sing Y N 360
TRP CD1 HD1 sing N N 361
TRP CD2 CE2 doub Y N 362
TRP CD2 CE3 sing Y N 363
TRP NE1 CE2 sing Y N 364
TRP NE1 HE1 sing N N 365
TRP CE2 CZ2 sing Y N 366
TRP CE3 CZ3 doub Y N 367
TRP CE3 HE3 sing N N 368
TRP CZ2 CH2 doub Y N 369
TRP CZ2 HZ2 sing N N 370
TRP CZ3 CH2 sing Y N 371
TRP CZ3 HZ3 sing N N 372
TRP CH2 HH2 sing N N 373
TRP OXT HXT sing N N 374
TYR N CA sing N N 375
TYR N H sing N N 376
TYR N H2 sing N N 377
TYR CA C sing N N 378
TYR CA CB sing N N 379
TYR CA HA sing N N 380
TYR C O doub N N 381
TYR C OXT sing N N 382
TYR CB CG sing N N 383
TYR CB HB2 sing N N 384
TYR CB HB3 sing N N 385
TYR CG CD1 doub Y N 386
TYR CG CD2 sing Y N 387
TYR CD1 CE1 sing Y N 388
TYR CD1 HD1 sing N N 389
TYR CD2 CE2 doub Y N 390
TYR CD2 HD2 sing N N 391
TYR CE1 CZ doub Y N 392
TYR CE1 HE1 sing N N 393
TYR CE2 CZ sing Y N 394
TYR CE2 HE2 sing N N 395
TYR CZ OH sing N N 396
TYR OH HH sing N N 397
TYR OXT HXT sing N N 398
VAL N CA sing N N 399
VAL N H sing N N 400
VAL N H2 sing N N 401
VAL CA C sing N N 402
VAL CA CB sing N N 403
VAL CA HA sing N N 404
VAL C O doub N N 405
VAL C OXT sing N N 406
VAL CB CG1 sing N N 407
VAL CB CG2 sing N N 408
VAL CB HB sing N N 409
VAL CG1 HG11 sing N N 410
VAL CG1 HG12 sing N N 411
VAL CG1 HG13 sing N N 412
VAL CG2 HG21 sing N N 413
VAL CG2 HG22 sing N N 414
VAL CG2 HG23 sing N N 415
VAL OXT HXT sing N N 416
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
3 A2G 1 n
3 GAL 2 n
#
_pdbx_initial_refinement_model.accession_code ?
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name Other
_pdbx_initial_refinement_model.details 'STRUCTURE OBTAINED FROM MAD'
#
_atom_sites.entry_id 1JOT
_atom_sites.fract_transf_matrix[1][1] 0.014793
_atom_sites.fract_transf_matrix[1][2] 0.008541
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.017081
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.006700
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
S
#
loop_