HEADER TRANSFERASE 31-JUL-01 1JP3
TITLE STRUCTURE OF E.COLI UNDECAPRENYL PYROPHOSPHATE SYNTHASE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: UNDECAPRENYL PYROPHOSPHATE SYNTHASE;
COMPND 3 CHAIN: A, B;
COMPND 4 EC: 2.5.1.31;
COMPND 5 ENGINEERED: YES;
COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;
SOURCE 3 ORGANISM_TAXID: 562;
SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 6 EXPRESSION_SYSTEM_STRAIN: B834;
SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET32XA-LIC
KEYWDS ROSSMANN FOLD, HYDROPHOBIC TUNNEL, PRODUCT CHAIN LENGTH, FLEXIBLE
KEYWDS 2 LOOP, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR T.P.KO,Y.K.CHEN,H.ROBINSON,P.C.TSAI,Y.G.GAO,A.P.C.CHEN,A.H.J.WANG,
AUTHOR 2 P.H.LIANG
REVDAT 6 30-OCT-24 1JP3 1 COMPND REMARK SEQADV HETNAM
REVDAT 6 2 1 LINK
REVDAT 5 24-FEB-09 1JP3 1 VERSN
REVDAT 4 01-APR-03 1JP3 1 JRNL
REVDAT 3 18-DEC-02 1JP3 1 REMARK
REVDAT 2 10-APR-02 1JP3 1 JRNL
REVDAT 1 15-AUG-01 1JP3 0
JRNL AUTH T.P.KO,Y.K.CHEN,H.ROBINSON,P.C.TSAI,Y.G.GAO,A.P.CHEN,
JRNL AUTH 2 A.H.WANG,P.H.LIANG
JRNL TITL MECHANISM OF PRODUCT CHAIN LENGTH DETERMINATION AND THE ROLE
JRNL TITL 2 OF A FLEXIBLE LOOP IN ESCHERICHIA COLI
JRNL TITL 3 UNDECAPRENYL-PYROPHOSPHATE SYNTHASE CATALYSIS.
JRNL REF J.BIOL.CHEM. V. 276 47474 2001
JRNL REFN ISSN 0021-9258
JRNL PMID 11581264
JRNL DOI 10.1074/JBC.M106747200
REMARK 2
REMARK 2 RESOLUTION. 1.80 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : CNS 1.0
REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-
REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,
REMARK 3 : READ,RICE,SIMONSON,WARREN
REMARK 3
REMARK 3 REFINEMENT TARGET : ENGH & HUBER
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.77
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 533864.890
REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000
REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.6
REMARK 3 NUMBER OF REFLECTIONS : 44367
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING SET) : 0.194
REMARK 3 FREE R VALUE : 0.228
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 2215
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 10
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.50
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4115
REMARK 3 BIN R VALUE (WORKING SET) : 0.2360
REMARK 3 BIN FREE R VALUE : 0.2470
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 199
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3379
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 12
REMARK 3 SOLVENT ATOMS : 645
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 20.20
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.10
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.63000
REMARK 3 B22 (A**2) : -1.20000
REMARK 3 B33 (A**2) : 1.83000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19
REMARK 3 ESD FROM SIGMAA (A) : 0.11
REMARK 3 LOW RESOLUTION CUTOFF (A) : 6.00
REMARK 3
REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.23
REMARK 3 ESD FROM C-V SIGMAA (A) : 0.11
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.012
REMARK 3 BOND ANGLES (DEGREES) : 1.500
REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.40
REMARK 3 IMPROPER ANGLES (DEGREES) : 0.950
REMARK 3
REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA
REMARK 3 MAIN-CHAIN BOND (A**2) : 0.940 ; 1.500
REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.570 ; 2.000
REMARK 3 SIDE-CHAIN BOND (A**2) : 1.560 ; 2.000
REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.350 ; 2.500
REMARK 3
REMARK 3 BULK SOLVENT MODELING.
REMARK 3 METHOD USED : FLAT MODEL
REMARK 3 KSOL : 0.35
REMARK 3 BSOL : 66.28
REMARK 3
REMARK 3 NCS MODEL : NULL
REMARK 3
REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT
REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL
REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL
REMARK 3
REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM
REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM
REMARK 3 PARAMETER FILE 3 : EGC.PARAM
REMARK 3 PARAMETER FILE 4 : NULL
REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP
REMARK 3 TOPOLOGY FILE 2 : WATER.TOP
REMARK 3 TOPOLOGY FILE 3 : EGC.TOP
REMARK 3 TOPOLOGY FILE 4 : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1JP3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-AUG-01.
REMARK 100 THE DEPOSITION ID IS D_1000014021.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 13-OCT-00
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : NSLS
REMARK 200 BEAMLINE : X4A
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791
REMARK 200 MONOCHROMATOR : SILICON CHANNEL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44820
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800
REMARK 200 RESOLUTION RANGE LOW (A) : 20.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6
REMARK 200 DATA REDUNDANCY : 10.10
REMARK 200 R MERGE (I) : 0.06200
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.8000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9
REMARK 200 DATA REDUNDANCY IN SHELL : 8.80
REMARK 200 R MERGE FOR SHELL (I) : 0.35600
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.500
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SINGLE-WAVELENGTH
REMARK 200 ANOMALOUS DIFFRACTION (SAD)
REMARK 200 SOFTWARE USED: SOLVE, RESOLVE
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 40.72
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: TRITON X-100, PEG8000, ETHYLELE
REMARK 280 GLYCOL, HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP,
REMARK 280 TEMPERATURE 298K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.09000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.07250
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.66700
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.07250
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.09000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.66700
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 300 REMARK: THE ENZYME IS A DIMER, INCLUDING CHAINS
REMARK 300 A AND B IN THE ASYMMETRIC UNIT.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 4100 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 20270 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 MET A 2
REMARK 465 LEU A 3
REMARK 465 SER A 4
REMARK 465 ALA A 5
REMARK 465 THR A 6
REMARK 465 GLN A 7
REMARK 465 PRO A 8
REMARK 465 LEU A 9
REMARK 465 SER A 10
REMARK 465 GLU A 11
REMARK 465 LYS A 12
REMARK 465 SER A 72
REMARK 465 GLU A 73
REMARK 465 ASN A 74
REMARK 465 TRP A 75
REMARK 465 ASN A 76
REMARK 465 ARG A 77
REMARK 465 PRO A 78
REMARK 465 ALA A 79
REMARK 465 GLN A 80
REMARK 465 GLU A 81
REMARK 465 VAL A 82
REMARK 465 SER A 83
REMARK 465 ALA A 84
REMARK 465 LEU A 85
REMARK 465 ARG A 241
REMARK 465 ARG A 242
REMARK 465 PHE A 243
REMARK 465 GLY A 244
REMARK 465 GLY A 245
REMARK 465 THR A 246
REMARK 465 GLU A 247
REMARK 465 PRO A 248
REMARK 465 GLY A 249
REMARK 465 ASP A 250
REMARK 465 GLU A 251
REMARK 465 THR A 252
REMARK 465 ALA A 253
REMARK 465 MET B 1
REMARK 465 MET B 2
REMARK 465 LEU B 3
REMARK 465 SER B 4
REMARK 465 ALA B 5
REMARK 465 THR B 6
REMARK 465 GLN B 7
REMARK 465 PRO B 8
REMARK 465 LEU B 9
REMARK 465 SER B 10
REMARK 465 GLU B 11
REMARK 465 LYS B 12
REMARK 465 LEU B 13
REMARK 465 PRO B 14
REMARK 465 ALA B 15
REMARK 465 HIS B 16
REMARK 465 SER B 72
REMARK 465 GLU B 73
REMARK 465 ASN B 74
REMARK 465 TRP B 75
REMARK 465 ASN B 76
REMARK 465 ARG B 77
REMARK 465 PRO B 78
REMARK 465 ALA B 79
REMARK 465 GLN B 80
REMARK 465 GLU B 81
REMARK 465 VAL B 82
REMARK 465 ARG B 239
REMARK 465 GLU B 240
REMARK 465 ARG B 241
REMARK 465 ARG B 242
REMARK 465 PHE B 243
REMARK 465 GLY B 244
REMARK 465 GLY B 245
REMARK 465 THR B 246
REMARK 465 GLU B 247
REMARK 465 PRO B 248
REMARK 465 GLY B 249
REMARK 465 ASP B 250
REMARK 465 GLU B 251
REMARK 465 THR B 252
REMARK 465 ALA B 253
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OD1 ASN A 234 O HOH A 830 2.11
REMARK 500 O HOH B 361 O HOH B 588 2.12
REMARK 500 NH1 ARG B 108 O HOH B 385 2.14
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 CYS B 18 CB CYS B 18 SG -0.102
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ARG A 52 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES
REMARK 500 ARG A 52 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 PRO A 14 152.07 -49.86
REMARK 500 HIS A 199 67.50 -116.13
REMARK 500 PHE A 204 -144.94 -85.05
REMARK 500 LEU A 206 -62.37 -121.97
REMARK 500 ASP A 225 -167.91 -119.71
REMARK 500 HIS B 199 62.35 -112.80
REMARK 500 PHE B 204 -146.78 -84.97
REMARK 500 LEU B 206 -63.86 -123.01
REMARK 500 ASP B 225 -166.34 -121.29
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 EGC A 701
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EGC A 701
DBREF 1JP3 A 1 253 UNP P60472 UPPS_ECOLI 1 253
DBREF 1JP3 B 1 253 UNP P60472 UPPS_ECOLI 1 253
SEQADV 1JP3 MSE A 25 UNP P60472 MET 25 MODIFIED RESIDUE
SEQADV 1JP3 MSE A 86 UNP P60472 MET 86 MODIFIED RESIDUE
SEQADV 1JP3 MSE A 176 UNP P60472 MET 176 MODIFIED RESIDUE
SEQADV 1JP3 MSE A 183 UNP P60472 MET 183 MODIFIED RESIDUE
SEQADV 1JP3 MSE B 25 UNP P60472 MET 25 MODIFIED RESIDUE
SEQADV 1JP3 MSE B 86 UNP P60472 MET 86 MODIFIED RESIDUE
SEQADV 1JP3 MSE B 176 UNP P60472 MET 176 MODIFIED RESIDUE
SEQADV 1JP3 MSE B 183 UNP P60472 MET 183 MODIFIED RESIDUE
SEQRES 1 A 253 MET MET LEU SER ALA THR GLN PRO LEU SER GLU LYS LEU
SEQRES 2 A 253 PRO ALA HIS GLY CYS ARG HIS VAL ALA ILE ILE MSE ASP
SEQRES 3 A 253 GLY ASN GLY ARG TRP ALA LYS LYS GLN GLY LYS ILE ARG
SEQRES 4 A 253 ALA PHE GLY HIS LYS ALA GLY ALA LYS SER VAL ARG ARG
SEQRES 5 A 253 ALA VAL SER PHE ALA ALA ASN ASN GLY ILE GLU ALA LEU
SEQRES 6 A 253 THR LEU TYR ALA PHE SER SER GLU ASN TRP ASN ARG PRO
SEQRES 7 A 253 ALA GLN GLU VAL SER ALA LEU MSE GLU LEU PHE VAL TRP
SEQRES 8 A 253 ALA LEU ASP SER GLU VAL LYS SER LEU HIS ARG HIS ASN
SEQRES 9 A 253 VAL ARG LEU ARG ILE ILE GLY ASP THR SER ARG PHE ASN
SEQRES 10 A 253 SER ARG LEU GLN GLU ARG ILE ARG LYS SER GLU ALA LEU
SEQRES 11 A 253 THR ALA GLY ASN THR GLY LEU THR LEU ASN ILE ALA ALA
SEQRES 12 A 253 ASN TYR GLY GLY ARG TRP ASP ILE VAL GLN GLY VAL ARG
SEQRES 13 A 253 GLN LEU ALA GLU LYS VAL GLN GLN GLY ASN LEU GLN PRO
SEQRES 14 A 253 ASP GLN ILE ASP GLU GLU MSE LEU ASN GLN HIS VAL CYS
SEQRES 15 A 253 MSE HIS GLU LEU ALA PRO VAL ASP LEU VAL ILE ARG THR
SEQRES 16 A 253 GLY GLY GLU HIS ARG ILE SER ASN PHE LEU LEU TRP GLN
SEQRES 17 A 253 ILE ALA TYR ALA GLU LEU TYR PHE THR ASP VAL LEU TRP
SEQRES 18 A 253 PRO ASP PHE ASP GLU GLN ASP PHE GLU GLY ALA LEU ASN
SEQRES 19 A 253 ALA PHE ALA ASN ARG GLU ARG ARG PHE GLY GLY THR GLU
SEQRES 20 A 253 PRO GLY ASP GLU THR ALA
SEQRES 1 B 253 MET MET LEU SER ALA THR GLN PRO LEU SER GLU LYS LEU
SEQRES 2 B 253 PRO ALA HIS GLY CYS ARG HIS VAL ALA ILE ILE MSE ASP
SEQRES 3 B 253 GLY ASN GLY ARG TRP ALA LYS LYS GLN GLY LYS ILE ARG
SEQRES 4 B 253 ALA PHE GLY HIS LYS ALA GLY ALA LYS SER VAL ARG ARG
SEQRES 5 B 253 ALA VAL SER PHE ALA ALA ASN ASN GLY ILE GLU ALA LEU
SEQRES 6 B 253 THR LEU TYR ALA PHE SER SER GLU ASN TRP ASN ARG PRO
SEQRES 7 B 253 ALA GLN GLU VAL SER ALA LEU MSE GLU LEU PHE VAL TRP
SEQRES 8 B 253 ALA LEU ASP SER GLU VAL LYS SER LEU HIS ARG HIS ASN
SEQRES 9 B 253 VAL ARG LEU ARG ILE ILE GLY ASP THR SER ARG PHE ASN
SEQRES 10 B 253 SER ARG LEU GLN GLU ARG ILE ARG LYS SER GLU ALA LEU
SEQRES 11 B 253 THR ALA GLY ASN THR GLY LEU THR LEU ASN ILE ALA ALA
SEQRES 12 B 253 ASN TYR GLY GLY ARG TRP ASP ILE VAL GLN GLY VAL ARG
SEQRES 13 B 253 GLN LEU ALA GLU LYS VAL GLN GLN GLY ASN LEU GLN PRO
SEQRES 14 B 253 ASP GLN ILE ASP GLU GLU MSE LEU ASN GLN HIS VAL CYS
SEQRES 15 B 253 MSE HIS GLU LEU ALA PRO VAL ASP LEU VAL ILE ARG THR
SEQRES 16 B 253 GLY GLY GLU HIS ARG ILE SER ASN PHE LEU LEU TRP GLN
SEQRES 17 B 253 ILE ALA TYR ALA GLU LEU TYR PHE THR ASP VAL LEU TRP
SEQRES 18 B 253 PRO ASP PHE ASP GLU GLN ASP PHE GLU GLY ALA LEU ASN
SEQRES 19 B 253 ALA PHE ALA ASN ARG GLU ARG ARG PHE GLY GLY THR GLU
SEQRES 20 B 253 PRO GLY ASP GLU THR ALA
MODRES 1JP3 MSE A 25 MET SELENOMETHIONINE
MODRES 1JP3 MSE A 86 MET SELENOMETHIONINE
MODRES 1JP3 MSE A 176 MET SELENOMETHIONINE
MODRES 1JP3 MSE A 183 MET SELENOMETHIONINE
MODRES 1JP3 MSE B 25 MET SELENOMETHIONINE
MODRES 1JP3 MSE B 86 MET SELENOMETHIONINE
MODRES 1JP3 MSE B 176 MET SELENOMETHIONINE
MODRES 1JP3 MSE B 183 MET SELENOMETHIONINE
HET MSE A 25 8
HET MSE A 86 8
HET MSE A 176 8
HET MSE A 183 8
HET MSE B 25 8
HET MSE B 86 8
HET MSE B 176 8
HET MSE B 183 8
HET EGC A 701 12
HETNAM MSE SELENOMETHIONINE
HETNAM EGC 2-(2-{2-[2-(2-{2-[2-(2-{2-[4-(1,1,3,3-TETRAMETHYL-
HETNAM 2 EGC BUTYL)-PHENOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-
HETNAM 3 EGC ETHOXY)-ETHOXY]-ETHOX Y}-ETHOXY)-ETHANOL
HETSYN EGC TRITON X-100
FORMUL 1 MSE 8(C5 H11 N O2 SE)
FORMUL 3 EGC C32 H58 O10
FORMUL 4 HOH *645(H2 O)
HELIX 1 1 GLY A 27 GLY A 36 1 10
HELIX 2 2 ILE A 38 ASN A 60 1 23
HELIX 3 3 MSE A 86 HIS A 103 1 18
HELIX 4 4 ASN A 117 ALA A 132 1 16
HELIX 5 5 GLY A 146 GLN A 164 1 19
HELIX 6 6 GLN A 168 ILE A 172 5 5
HELIX 7 7 ASP A 173 GLN A 179 1 7
HELIX 8 8 LEU A 206 ALA A 210 5 5
HELIX 9 9 LEU A 220 PHE A 224 5 5
HELIX 10 10 ASP A 225 GLU A 240 1 16
HELIX 11 11 GLY B 27 GLN B 35 1 9
HELIX 12 12 ILE B 38 ASN B 60 1 23
HELIX 13 13 SER B 83 HIS B 103 1 21
HELIX 14 14 ASN B 117 ALA B 132 1 16
HELIX 15 15 GLY B 146 GLN B 164 1 19
HELIX 16 16 GLN B 168 ILE B 172 5 5
HELIX 17 17 ASP B 173 GLN B 179 1 7
HELIX 18 18 LEU B 206 ALA B 210 5 5
HELIX 19 19 LEU B 220 PHE B 224 5 5
HELIX 20 20 ASP B 225 ASN B 238 1 14
SHEET 1 A 6 ARG A 106 ILE A 110 0
SHEET 2 A 6 THR A 138 ALA A 142 1 N LEU A 139 O ARG A 106
SHEET 3 A 6 ALA A 64 ALA A 69 1 O LEU A 65 N ASN A 140
SHEET 4 A 6 HIS A 20 MSE A 25 1 O VAL A 21 N THR A 66
SHEET 5 A 6 LEU A 191 ARG A 194 1 O LEU A 191 N ALA A 22
SHEET 6 A 6 GLU A 213 PHE A 216 1 O GLU A 213 N VAL A 192
SHEET 1 B 6 ARG B 106 ILE B 110 0
SHEET 2 B 6 THR B 138 ALA B 142 1 N LEU B 139 O ARG B 106
SHEET 3 B 6 ALA B 64 ALA B 69 1 O LEU B 65 N ASN B 140
SHEET 4 B 6 HIS B 20 MSE B 25 1 O VAL B 21 N THR B 66
SHEET 5 B 6 LEU B 191 ARG B 194 1 O LEU B 191 N ALA B 22
SHEET 6 B 6 GLU B 213 PHE B 216 1 O GLU B 213 N VAL B 192
LINK C ILE A 24 N MSE A 25 1555 1555 1.32
LINK C MSE A 25 N ASP A 26 1555 1555 1.32
LINK C MSE A 86 N GLU A 87 1555 1555 1.33
LINK C GLU A 175 N MSE A 176 1555 1555 1.33
LINK C MSE A 176 N LEU A 177 1555 1555 1.32
LINK C CYS A 182 N MSE A 183 1555 1555 1.33
LINK C MSE A 183 N HIS A 184 1555 1555 1.34
LINK C ILE B 24 N MSE B 25 1555 1555 1.33
LINK C MSE B 25 N ASP B 26 1555 1555 1.32
LINK C LEU B 85 N MSE B 86 1555 1555 1.33
LINK C MSE B 86 N GLU B 87 1555 1555 1.33
LINK C GLU B 175 N MSE B 176 1555 1555 1.33
LINK C MSE B 176 N LEU B 177 1555 1555 1.33
LINK C CYS B 182 N MSE B 183 1555 1555 1.34
LINK C MSE B 183 N HIS B 184 1555 1555 1.32
SITE 1 AC1 4 MSE A 86 PHE A 89 GLU A 96 HOH A 807
CRYST1 64.180 67.334 110.145 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.015581 0.000000 0.000000 0.00000
SCALE2 0.000000 0.014851 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009079 0.00000