HEADER OXIDOREDUCTASE 03-AUG-01 1JQ4 TITLE [2FE-2S] DOMAIN OF METHANE MONOOXYGENASE REDUCTASE FROM METHYLOCOCCUS TITLE 2 CAPSULATUS (BATH) COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHANE MONOOXYGENASE COMPONENT C; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 SYNONYM: METHANE MONOOXYGENASE REDUCTASE; COMPND 6 EC: 1.14.13.25; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOCOCCUS CAPSULATUS STR. BATH; SOURCE 3 ORGANISM_TAXID: 243233; SOURCE 4 STRAIN: BATH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRED-FD KEYWDS [2FE-2S] FERREDOXIN, OXIDOREDUCTASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR J.MUELLER,A.A.LUGOVSKOY,G.WAGNER,S.J.LIPPARD REVDAT 4 23-FEB-22 1JQ4 1 REMARK LINK REVDAT 3 24-FEB-09 1JQ4 1 VERSN REVDAT 2 01-APR-03 1JQ4 1 JRNL REVDAT 1 09-JAN-02 1JQ4 0 JRNL AUTH J.MULLER,A.A.LUGOVSKOY,G.WAGNER,S.J.LIPPARD JRNL TITL NMR STRUCTURE OF THE [2FE-2S] FERREDOXIN DOMAIN FROM SOLUBLE JRNL TITL 2 METHANE MONOOXYGENASE REDUCTASE AND INTERACTION WITH ITS JRNL TITL 3 HYDROXYLASE. JRNL REF BIOCHEMISTRY V. 41 42 2002 JRNL REFN ISSN 0006-2960 JRNL PMID 11772001 JRNL DOI 10.1021/BI015668K REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : FELIX 97.0, X-PLOR 3.84 REMARK 3 AUTHORS : MSI (FELIX), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HIGH-RESOLUTION NMR REMARK 4 REMARK 4 1JQ4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-01. REMARK 100 THE DEPOSITION ID IS D_1000014056. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 50 MM NA PHOSPHATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM PROTEIN; 50 MM NA REMARK 210 PHOSPHATE PH 7.0; 1 MM DTT; 1.5 REMARK 210 MM NA DITHIONITE; 0.1 % NAN3; REMARK 210 PROTEASE INHIBITOR REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : A STANDARD SET OF NMR REMARK 210 EXPERIMENTS REQUIRED FOR HIGH REMARK 210 RESOLUTION STRUCTURE REMARK 210 DETERMINATION; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ; 400 MHZ; 750 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : DRX; UNITYPLUS; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA 1.5, XEASY 1.3.9, VNMR REMARK 210 5.1A, XWINNMR 2.5 REMARK 210 METHOD USED : NMR REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 300 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 9 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 23 -76.68 59.40 REMARK 500 1 ASP A 26 100.14 27.88 REMARK 500 1 ASN A 35 -29.38 172.74 REMARK 500 1 SER A 40 -89.08 -57.51 REMARK 500 1 SER A 41 -96.04 -164.97 REMARK 500 1 CYS A 50 57.81 -68.09 REMARK 500 1 GLU A 72 -71.42 -68.08 REMARK 500 1 LEU A 78 -153.75 -170.51 REMARK 500 1 ARG A 83 -61.37 -102.58 REMARK 500 1 THR A 84 95.94 54.48 REMARK 500 1 THR A 97 -39.96 -162.14 REMARK 500 2 SER A 23 -74.93 61.43 REMARK 500 2 ASP A 26 106.03 34.55 REMARK 500 2 ASN A 35 -30.77 174.11 REMARK 500 2 MET A 39 23.71 -169.83 REMARK 500 2 SER A 40 -90.96 48.94 REMARK 500 2 SER A 41 -81.94 -163.59 REMARK 500 2 CYS A 50 56.01 -68.97 REMARK 500 2 GLU A 72 -70.98 -68.22 REMARK 500 2 LEU A 78 -157.08 -167.54 REMARK 500 2 ARG A 83 -42.46 -160.48 REMARK 500 2 THR A 84 173.55 46.69 REMARK 500 2 THR A 97 26.35 -159.53 REMARK 500 3 SER A 23 -71.05 62.32 REMARK 500 3 GLU A 25 31.84 -90.93 REMARK 500 3 ASN A 35 -28.55 170.09 REMARK 500 3 PHE A 37 87.64 -150.49 REMARK 500 3 SER A 40 -146.88 -64.54 REMARK 500 3 SER A 41 -42.41 -142.94 REMARK 500 3 CYS A 50 56.90 -69.90 REMARK 500 3 GLU A 72 -70.81 -67.99 REMARK 500 3 LEU A 78 -150.99 -166.97 REMARK 500 3 THR A 84 106.11 70.41 REMARK 500 3 PRO A 86 43.31 -75.45 REMARK 500 3 THR A 97 -40.78 -158.55 REMARK 500 4 SER A 23 -74.33 61.21 REMARK 500 4 ASN A 35 -26.32 167.26 REMARK 500 4 PHE A 37 82.34 -162.00 REMARK 500 4 MET A 39 30.10 -171.58 REMARK 500 4 SER A 40 -94.86 44.41 REMARK 500 4 SER A 41 -73.51 -164.20 REMARK 500 4 ALA A 48 -3.96 72.79 REMARK 500 4 GLU A 72 -70.83 -68.27 REMARK 500 4 LEU A 78 -153.13 -164.01 REMARK 500 4 ARG A 83 -61.30 -155.29 REMARK 500 4 THR A 84 174.00 47.08 REMARK 500 4 PRO A 86 38.67 -86.28 REMARK 500 4 THR A 97 -44.30 -160.44 REMARK 500 5 SER A 23 -75.70 59.44 REMARK 500 5 ASN A 35 -27.40 171.94 REMARK 500 REMARK 500 THIS ENTRY HAS 127 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 3 0.31 SIDE CHAIN REMARK 500 1 ARG A 18 0.26 SIDE CHAIN REMARK 500 1 ARG A 22 0.25 SIDE CHAIN REMARK 500 1 ARG A 33 0.29 SIDE CHAIN REMARK 500 1 ARG A 43 0.30 SIDE CHAIN REMARK 500 1 ARG A 83 0.31 SIDE CHAIN REMARK 500 2 ARG A 3 0.28 SIDE CHAIN REMARK 500 2 ARG A 18 0.31 SIDE CHAIN REMARK 500 2 ARG A 22 0.30 SIDE CHAIN REMARK 500 2 ARG A 33 0.26 SIDE CHAIN REMARK 500 2 ARG A 43 0.27 SIDE CHAIN REMARK 500 2 ARG A 83 0.22 SIDE CHAIN REMARK 500 3 ARG A 3 0.30 SIDE CHAIN REMARK 500 3 ARG A 18 0.29 SIDE CHAIN REMARK 500 3 ARG A 22 0.29 SIDE CHAIN REMARK 500 3 ARG A 33 0.27 SIDE CHAIN REMARK 500 3 ARG A 43 0.23 SIDE CHAIN REMARK 500 3 ARG A 83 0.31 SIDE CHAIN REMARK 500 4 ARG A 3 0.32 SIDE CHAIN REMARK 500 4 ARG A 18 0.31 SIDE CHAIN REMARK 500 4 ARG A 22 0.31 SIDE CHAIN REMARK 500 4 ARG A 33 0.30 SIDE CHAIN REMARK 500 4 ARG A 43 0.28 SIDE CHAIN REMARK 500 4 ARG A 83 0.27 SIDE CHAIN REMARK 500 5 ARG A 3 0.27 SIDE CHAIN REMARK 500 5 ARG A 18 0.30 SIDE CHAIN REMARK 500 5 ARG A 22 0.26 SIDE CHAIN REMARK 500 5 ARG A 33 0.32 SIDE CHAIN REMARK 500 5 ARG A 43 0.32 SIDE CHAIN REMARK 500 5 ARG A 83 0.32 SIDE CHAIN REMARK 500 6 ARG A 3 0.26 SIDE CHAIN REMARK 500 6 ARG A 18 0.31 SIDE CHAIN REMARK 500 6 ARG A 22 0.29 SIDE CHAIN REMARK 500 6 ARG A 33 0.29 SIDE CHAIN REMARK 500 6 ARG A 43 0.31 SIDE CHAIN REMARK 500 6 ARG A 83 0.29 SIDE CHAIN REMARK 500 7 ARG A 3 0.29 SIDE CHAIN REMARK 500 7 ARG A 18 0.25 SIDE CHAIN REMARK 500 7 ARG A 22 0.31 SIDE CHAIN REMARK 500 7 ARG A 33 0.23 SIDE CHAIN REMARK 500 7 ARG A 43 0.31 SIDE CHAIN REMARK 500 7 ARG A 83 0.27 SIDE CHAIN REMARK 500 8 ARG A 3 0.30 SIDE CHAIN REMARK 500 8 ARG A 18 0.30 SIDE CHAIN REMARK 500 8 ARG A 22 0.29 SIDE CHAIN REMARK 500 8 ARG A 33 0.31 SIDE CHAIN REMARK 500 8 ARG A 43 0.32 SIDE CHAIN REMARK 500 8 ARG A 83 0.31 SIDE CHAIN REMARK 500 9 ARG A 3 0.32 SIDE CHAIN REMARK 500 9 ARG A 18 0.30 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 60 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 99 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 42 SG REMARK 620 2 FES A 99 S1 110.9 REMARK 620 3 FES A 99 S2 121.2 105.8 REMARK 620 4 CYS A 47 SG 95.4 110.8 112.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 99 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 50 SG REMARK 620 2 FES A 99 S1 94.7 REMARK 620 3 FES A 99 S2 115.5 105.8 REMARK 620 4 CYS A 82 SG 117.1 109.8 111.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES A 99 DBREF 1JQ4 A 1 98 UNP P22868 MMOC_METCA 1 98 SEQRES 1 A 98 MET GLN ARG VAL HIS THR ILE THR ALA VAL THR GLU ASP SEQRES 2 A 98 GLY GLU SER LEU ARG PHE GLU CYS ARG SER ASP GLU ASP SEQRES 3 A 98 VAL ILE THR ALA ALA LEU ARG GLN ASN ILE PHE LEU MET SEQRES 4 A 98 SER SER CYS ARG GLU GLY GLY CYS ALA THR CYS LYS ALA SEQRES 5 A 98 LEU CYS SER GLU GLY ASP TYR ASP LEU LYS GLY CYS SER SEQRES 6 A 98 VAL GLN ALA LEU PRO PRO GLU GLU GLU GLU GLU GLY LEU SEQRES 7 A 98 VAL LEU LEU CYS ARG THR TYR PRO LYS THR ASP LEU GLU SEQRES 8 A 98 ILE GLU LEU PRO TYR THR HIS HET FES A 99 4 HETNAM FES FE2/S2 (INORGANIC) CLUSTER FORMUL 2 FES FE2 S2 HELIX 1 1 VAL A 27 GLN A 34 1 8 HELIX 2 2 VAL A 66 LEU A 69 1 4 HELIX 3 3 PRO A 71 GLY A 77 1 7 SHEET 1 A 4 GLU A 15 ARG A 22 0 SHEET 2 A 4 VAL A 4 THR A 11 -1 N ALA A 9 O LEU A 17 SHEET 3 A 4 GLU A 91 GLU A 93 1 N ILE A 92 O THR A 8 SHEET 4 A 4 CYS A 54 GLU A 56 -1 N GLU A 56 O GLU A 91 SHEET 1 B 2 LYS A 51 ALA A 52 0 SHEET 2 B 2 VAL A 79 LEU A 80 -1 N VAL A 79 O ALA A 52 LINK SG CYS A 42 FE1 FES A 99 1555 1555 2.22 LINK SG CYS A 47 FE1 FES A 99 1555 1555 2.29 LINK SG CYS A 50 FE2 FES A 99 1555 1555 2.36 LINK SG CYS A 82 FE2 FES A 99 1555 1555 2.29 SITE 1 AC1 7 SER A 41 CYS A 42 GLY A 45 GLY A 46 SITE 2 AC1 7 CYS A 47 CYS A 50 CYS A 82 CRYST1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1