HEADER LYASE 07-AUG-01 1JQN TITLE CRYSTAL STRUCTURE OF E.COLI PHOSPHOENOLPYRUVATE CARBOXYLASE IN COMPLEX TITLE 2 WITH MN2+ AND DCDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOENOLPYRUVATE CARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PEPCASE, PEPC; COMPND 5 EC: 4.1.1.31; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: F15 KEYWDS BETA BARREL, MN2+ AND DCDP COMPLEX, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR H.MATSUMURA,Y.KAI REVDAT 4 13-MAR-24 1JQN 1 REMARK REVDAT 3 30-MAY-18 1JQN 1 REMARK REVDAT 2 24-FEB-09 1JQN 1 VERSN REVDAT 1 14-JAN-03 1JQN 0 JRNL AUTH H.MATSUMURA,Y.XIE,S.SHIRAKATA,T.INOUE,T.YOSHINAGA,Y.UENO, JRNL AUTH 2 K.IZUI,Y.KAI JRNL TITL CRYSTAL STRUCTURES OF C4 FORM MAIZE AND QUATERNARY COMPLEX JRNL TITL 2 OF E. COLI PHOSPHOENOLPYRUVATE CARBOXYLASES. JRNL REF STRUCTURE V. 10 1721 2002 JRNL REFN ISSN 0969-2126 JRNL PMID 12467579 JRNL DOI 10.1016/S0969-2126(02)00913-9 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.MATSUMURA,M.TERADA,S.SHIRAKATA,T.INOUE,T.YOSHINAGA,K.IZUI, REMARK 1 AUTH 2 Y.KAI REMARK 1 TITL PLAUSIBLE PHOSPHOENOLPYRUVATE BINDING SITE REVEALED BY 2.6 A REMARK 1 TITL 2 STRUCTURE OF MN2+-BOUND PHOSPHOENOLPYRUVATE CARBOXYLASE FROM REMARK 1 TITL 3 ESCHERICHIA COLI. REMARK 1 REF FEBS LETT. V. 458 93 1999 REMARK 1 REFN ISSN 0014-5793 REMARK 1 REFERENCE 2 REMARK 1 AUTH Y.KAI,H.MATSUMURA,T.INOUE,K.TERADA,Y.NAGARA,T.YOSHINAGA, REMARK 1 AUTH 2 A.KIHARA,K.TSUMURA,K.IZUI REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF PHOSPHOENOLPYRUVATE REMARK 1 TITL 2 CARBOXYLASE: A PROPOSED MECHANISM FOR ALLOSTERIC INHIBITION REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 96 823 1999 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 3 REMARK 1 AUTH H.MATSUMURA,T.NAGATA,M.TERADA,S.SHIRAKATA,T.INOUE, REMARK 1 AUTH 2 T.YOSHINAGA,Y.UENO,H.SAZE,K.IZUI,Y.KAI REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION STUDIES OF REMARK 1 TITL 2 C4-FORM PHOSPHOENOLPYRUVATE CARBOXYLASE FROM MAIZE REMARK 1 TITL 3 DIFFRACTION STUDIES OF C4-FORM PHOSPHOENOLPYRUVATE REMARK 1 TITL 4 CARBOXYLASE FROM MAIZE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 55 1937 1999 REMARK 1 REFN ISSN 0907-4449 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 45753 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2292 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.50 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3570 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 300 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6881 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 194 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.56 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.790 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JQN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-AUG-01. REMARK 100 THE DEPOSITION ID IS D_1000014075. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-99 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-18B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : DIFFRACTOMETER REMARK 200 DETECTOR MANUFACTURER : WEISSENBERG REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45789 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 39.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 11.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG300, TRIS-HCL, MNCL2, DCDP, PH 8.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 58.97500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 124.53000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 41.56000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 58.97500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 124.53000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.56000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 58.97500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 124.53000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.56000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 58.97500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 124.53000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 41.56000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER GENERATED FROM REMARK 300 MONOMER IN THE ASSYMMETRIC UNIT BY D2 SYMMETRY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 117.95000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 117.95000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 701 REMARK 465 LYS A 702 REMARK 465 ARG A 703 REMARK 465 ARG A 704 REMARK 465 PRO A 705 REMARK 465 THR A 706 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 190 CG CD OE1 OE2 REMARK 470 ARG A 443 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 305 CD GLU A 305 OE1 0.101 REMARK 500 GLU A 305 CD GLU A 305 OE2 0.108 REMARK 500 GLU A 306 CD GLU A 306 OE1 0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 26 -77.38 -44.89 REMARK 500 ASN A 49 97.31 -68.10 REMARK 500 ASP A 165 14.76 55.24 REMARK 500 THR A 188 72.17 -102.66 REMARK 500 SER A 212 -47.05 -145.58 REMARK 500 MET A 292 152.33 -46.06 REMARK 500 GLU A 306 -8.30 70.29 REMARK 500 LEU A 339 139.01 -170.53 REMARK 500 PRO A 342 -172.30 -60.94 REMARK 500 THR A 347 -8.87 -141.18 REMARK 500 CYS A 366 27.71 -70.15 REMARK 500 MET A 368 43.64 -147.24 REMARK 500 LEU A 390 -61.32 78.84 REMARK 500 GLN A 446 72.59 -115.15 REMARK 500 LYS A 478 -36.61 -131.69 REMARK 500 TYR A 621 20.19 -140.37 REMARK 500 PRO A 687 33.04 -86.98 REMARK 500 MET A 727 19.26 58.08 REMARK 500 TRP A 731 -19.94 -154.73 REMARK 500 LEU A 732 -42.38 -22.88 REMARK 500 MET A 819 70.46 42.19 REMARK 500 ARG A 880 -134.85 56.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 902 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 506 OE1 REMARK 620 2 ASP A 543 OD1 84.0 REMARK 620 3 DCO A 901 O2 93.1 73.1 REMARK 620 4 DCO A 901 O3 162.5 111.6 99.0 REMARK 620 5 HOH A1095 O 74.1 77.2 148.7 100.8 REMARK 620 6 HOH A1096 O 84.0 165.6 115.4 79.4 91.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ASP A 884 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCO A 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FIY RELATED DB: PDB REMARK 900 1FIY CONTAINS THE NATIVE STRUCTURE OF E.COLI PEPC. REMARK 900 RELATED ID: 1JQO RELATED DB: PDB REMARK 900 1JQO CONTAINS THE STRUCTURE OF C4-FORM PHOSPHOENOLPYRUVATE REMARK 900 CARBOXYLASE FROM MAIZE DBREF 1JQN A 1 883 UNP P00864 CAPP_ECOLI 1 883 SEQRES 1 A 883 MET ASN GLU GLN TYR SER ALA LEU ARG SER ASN VAL SER SEQRES 2 A 883 MET LEU GLY LYS VAL LEU GLY GLU THR ILE LYS ASP ALA SEQRES 3 A 883 LEU GLY GLU HIS ILE LEU GLU ARG VAL GLU THR ILE ARG SEQRES 4 A 883 LYS LEU SER LYS SER SER ARG ALA GLY ASN ASP ALA ASN SEQRES 5 A 883 ARG GLN GLU LEU LEU THR THR LEU GLN ASN LEU SER ASN SEQRES 6 A 883 ASP GLU LEU LEU PRO VAL ALA ARG ALA PHE SER GLN PHE SEQRES 7 A 883 LEU ASN LEU ALA ASN THR ALA GLU GLN TYR HIS SER ILE SEQRES 8 A 883 SER PRO LYS GLY GLU ALA ALA SER ASN PRO GLU VAL ILE SEQRES 9 A 883 ALA ARG THR LEU ARG LYS LEU LYS ASN GLN PRO GLU LEU SEQRES 10 A 883 SER GLU ASP THR ILE LYS LYS ALA VAL GLU SER LEU SER SEQRES 11 A 883 LEU GLU LEU VAL LEU THR ALA HIS PRO THR GLU ILE THR SEQRES 12 A 883 ARG ARG THR LEU ILE HIS LYS MET VAL GLU VAL ASN ALA SEQRES 13 A 883 CYS LEU LYS GLN LEU ASP ASN LYS ASP ILE ALA ASP TYR SEQRES 14 A 883 GLU HIS ASN GLN LEU MET ARG ARG LEU ARG GLN LEU ILE SEQRES 15 A 883 ALA GLN SER TRP HIS THR ASP GLU ILE ARG LYS LEU ARG SEQRES 16 A 883 PRO SER PRO VAL ASP GLU ALA LYS TRP GLY PHE ALA VAL SEQRES 17 A 883 VAL GLU ASN SER LEU TRP GLN GLY VAL PRO ASN TYR LEU SEQRES 18 A 883 ARG GLU LEU ASN GLU GLN LEU GLU GLU ASN LEU GLY TYR SEQRES 19 A 883 LYS LEU PRO VAL GLU PHE VAL PRO VAL ARG PHE THR SER SEQRES 20 A 883 TRP MET GLY GLY ASP ARG ASP GLY ASN PRO ASN VAL THR SEQRES 21 A 883 ALA ASP ILE THR ARG HIS VAL LEU LEU LEU SER ARG TRP SEQRES 22 A 883 LYS ALA THR ASP LEU PHE LEU LYS ASP ILE GLN VAL LEU SEQRES 23 A 883 VAL SER GLU LEU SER MET VAL GLU ALA THR PRO GLU LEU SEQRES 24 A 883 LEU ALA LEU VAL GLY GLU GLU GLY ALA ALA GLU PRO TYR SEQRES 25 A 883 ARG TYR LEU MET LYS ASN LEU ARG SER ARG LEU MET ALA SEQRES 26 A 883 THR GLN ALA TRP LEU GLU ALA ARG LEU LYS GLY GLU GLU SEQRES 27 A 883 LEU PRO LYS PRO GLU GLY LEU LEU THR GLN ASN GLU GLU SEQRES 28 A 883 LEU TRP GLU PRO LEU TYR ALA CYS TYR GLN SER LEU GLN SEQRES 29 A 883 ALA CYS GLY MET GLY ILE ILE ALA ASN GLY ASP LEU LEU SEQRES 30 A 883 ASP THR LEU ARG ARG VAL LYS CYS PHE GLY VAL PRO LEU SEQRES 31 A 883 VAL ARG ILE ASP ILE ARG GLN GLU SER THR ARG HIS THR SEQRES 32 A 883 GLU ALA LEU GLY GLU LEU THR ARG TYR LEU GLY ILE GLY SEQRES 33 A 883 ASP TYR GLU SER TRP SER GLU ALA ASP LYS GLN ALA PHE SEQRES 34 A 883 LEU ILE ARG GLU LEU ASN SER LYS ARG PRO LEU LEU PRO SEQRES 35 A 883 ARG ASN TRP GLN PRO SER ALA GLU THR ARG GLU VAL LEU SEQRES 36 A 883 ASP THR CYS GLN VAL ILE ALA GLU ALA PRO GLN GLY SER SEQRES 37 A 883 ILE ALA ALA TYR VAL ILE SER MET ALA LYS THR PRO SER SEQRES 38 A 883 ASP VAL LEU ALA VAL HIS LEU LEU LEU LYS GLU ALA GLY SEQRES 39 A 883 ILE GLY PHE ALA MET PRO VAL ALA PRO LEU PHE GLU THR SEQRES 40 A 883 LEU ASP ASP LEU ASN ASN ALA ASN ASP VAL MET THR GLN SEQRES 41 A 883 LEU LEU ASN ILE ASP TRP TYR ARG GLY LEU ILE GLN GLY SEQRES 42 A 883 LYS GLN MET VAL MET ILE GLY TYR SER ASP SER ALA LYS SEQRES 43 A 883 ASP ALA GLY VAL MET ALA ALA SER TRP ALA GLN TYR GLN SEQRES 44 A 883 ALA GLN ASP ALA LEU ILE LYS THR CYS GLU LYS ALA GLY SEQRES 45 A 883 ILE GLU LEU THR LEU PHE HIS GLY ARG GLY GLY SER ILE SEQRES 46 A 883 GLY ARG GLY GLY ALA PRO ALA HIS ALA ALA LEU LEU SER SEQRES 47 A 883 GLN PRO PRO GLY SER LEU LYS GLY GLY LEU ARG VAL THR SEQRES 48 A 883 GLU GLN GLY GLU MET ILE ARG PHE LYS TYR GLY LEU PRO SEQRES 49 A 883 GLU ILE THR VAL SER SER LEU SER LEU TYR THR GLY ALA SEQRES 50 A 883 ILE LEU GLU ALA ASN LEU LEU PRO PRO PRO GLU PRO LYS SEQRES 51 A 883 GLU SER TRP ARG ARG ILE MET ASP GLU LEU SER VAL ILE SEQRES 52 A 883 SER CYS ASP VAL TYR ARG GLY TYR VAL ARG GLU ASN LYS SEQRES 53 A 883 ASP PHE VAL PRO TYR PHE ARG SER ALA THR PRO GLU GLN SEQRES 54 A 883 GLU LEU GLY LYS LEU PRO LEU GLY SER ARG PRO ALA LYS SEQRES 55 A 883 ARG ARG PRO THR GLY GLY VAL GLU SER LEU ARG ALA ILE SEQRES 56 A 883 PRO TRP ILE PHE ALA TRP THR GLN ASN ARG LEU MET LEU SEQRES 57 A 883 PRO ALA TRP LEU GLY ALA GLY THR ALA LEU GLN LYS VAL SEQRES 58 A 883 VAL GLU ASP GLY LYS GLN SER GLU LEU GLU ALA MET CYS SEQRES 59 A 883 ARG ASP TRP PRO PHE PHE SER THR ARG LEU GLY MET LEU SEQRES 60 A 883 GLU MET VAL PHE ALA LYS ALA ASP LEU TRP LEU ALA GLU SEQRES 61 A 883 TYR TYR ASP GLN ARG LEU VAL ASP LYS ALA LEU TRP PRO SEQRES 62 A 883 LEU GLY LYS GLU LEU ARG ASN LEU GLN GLU GLU ASP ILE SEQRES 63 A 883 LYS VAL VAL LEU ALA ILE ALA ASN ASP SER HIS LEU MET SEQRES 64 A 883 ALA ASP LEU PRO TRP ILE ALA GLU SER ILE GLN LEU ARG SEQRES 65 A 883 ASN ILE TYR THR ASP PRO LEU ASN VAL LEU GLN ALA GLU SEQRES 66 A 883 LEU LEU HIS ARG SER ARG GLN ALA GLU LYS GLU GLY GLN SEQRES 67 A 883 GLU PRO ASP PRO ARG VAL GLU GLN ALA LEU MET VAL THR SEQRES 68 A 883 ILE ALA GLY ILE ALA ALA GLY MET ARG ASN THR GLY HET MN A 902 1 HET ASP A 884 9 HET DCO A 901 12 HETNAM MN MANGANESE (II) ION HETNAM ASP ASPARTIC ACID HETNAM DCO 3,3-DICHLORO-2-PHOSPHONOMETHYL-ACRYLIC ACID FORMUL 2 MN MN 2+ FORMUL 3 ASP C4 H7 N O4 FORMUL 4 DCO C4 H5 CL2 O5 P FORMUL 5 HOH *194(H2 O) HELIX 1 1 TYR A 5 LEU A 27 1 23 HELIX 2 2 GLU A 29 ALA A 47 1 19 HELIX 3 3 ASN A 49 ASN A 62 1 14 HELIX 4 4 SER A 64 SER A 92 1 29 HELIX 5 5 PRO A 101 ASN A 113 1 13 HELIX 6 6 SER A 118 SER A 128 1 11 HELIX 7 7 LEU A 147 ASP A 162 1 16 HELIX 8 8 ALA A 167 THR A 188 1 22 HELIX 9 9 SER A 197 LEU A 232 1 36 HELIX 10 10 THR A 260 LEU A 290 1 31 HELIX 11 11 THR A 296 GLY A 304 1 9 HELIX 12 12 GLU A 310 LYS A 335 1 26 HELIX 13 13 GLN A 348 CYS A 366 1 19 HELIX 14 14 MET A 368 ASN A 373 1 6 HELIX 15 15 GLY A 374 PHE A 386 1 13 HELIX 16 16 SER A 399 LEU A 413 1 15 HELIX 17 17 ASP A 417 TRP A 421 5 5 HELIX 18 18 SER A 422 SER A 436 1 15 HELIX 19 19 SER A 448 ALA A 464 1 17 HELIX 20 20 THR A 479 GLU A 492 1 14 HELIX 21 21 THR A 507 ILE A 531 1 25 HELIX 22 22 GLY A 540 GLY A 572 1 33 HELIX 23 23 GLY A 583 ARG A 587 5 5 HELIX 24 24 GLY A 588 SER A 598 1 11 HELIX 25 25 GLN A 613 GLU A 615 5 3 HELIX 26 26 MET A 616 GLY A 622 1 7 HELIX 27 27 LEU A 623 LEU A 644 1 22 HELIX 28 28 LYS A 650 ARG A 673 1 24 HELIX 29 29 ASP A 677 THR A 686 1 10 HELIX 30 30 PRO A 687 LEU A 694 1 8 HELIX 31 31 GLY A 708 LEU A 712 5 5 HELIX 32 32 ARG A 713 ASN A 724 1 12 HELIX 33 33 MET A 727 TRP A 731 5 5 HELIX 34 34 GLY A 733 GLU A 743 1 11 HELIX 35 35 LYS A 746 ALA A 774 1 29 HELIX 36 36 ASP A 775 VAL A 787 1 13 HELIX 37 37 LEU A 791 ALA A 813 1 23 HELIX 38 38 LEU A 822 GLY A 857 1 36 HELIX 39 39 ASP A 861 ARG A 880 1 20 SHEET 1 A 9 LEU A 131 LEU A 135 0 SHEET 2 A 9 VAL A 243 SER A 247 1 O THR A 246 N LEU A 135 SHEET 3 A 9 ARG A 392 GLU A 398 1 O ARG A 392 N SER A 247 SHEET 4 A 9 ILE A 469 SER A 475 1 O VAL A 473 N ILE A 395 SHEET 5 A 9 VAL A 501 PHE A 505 1 O ALA A 502 N ILE A 474 SHEET 6 A 9 LYS A 534 ILE A 539 1 O MET A 538 N PHE A 505 SHEET 7 A 9 GLU A 574 HIS A 579 1 O PHE A 578 N VAL A 537 SHEET 8 A 9 LEU A 608 GLU A 612 1 O ARG A 609 N HIS A 579 SHEET 9 A 9 LEU A 131 LEU A 135 1 N VAL A 134 O VAL A 610 LINK OE1 GLU A 506 MN MN A 902 1555 1555 2.11 LINK OD1 ASP A 543 MN MN A 902 1555 1555 2.16 LINK O2 DCO A 901 MN MN A 902 1555 1555 1.93 LINK O3 DCO A 901 MN MN A 902 1555 1555 2.10 LINK MN MN A 902 O HOH A1095 1555 1555 2.31 LINK MN MN A 902 O HOH A1096 1555 1555 2.06 SITE 1 AC1 5 GLU A 506 ASP A 543 DCO A 901 HOH A1095 SITE 2 AC1 5 HOH A1096 SITE 1 AC2 7 ARG A 587 MET A 769 LYS A 773 ARG A 832 SITE 2 AC2 7 ASN A 881 HOH A 928 HOH A1090 SITE 1 AC3 11 ARG A 396 GLU A 506 MET A 538 GLY A 540 SITE 2 AC3 11 ASP A 543 GLY A 580 ARG A 581 ARG A 699 SITE 3 AC3 11 ARG A 713 MN A 902 HOH A1096 CRYST1 117.950 249.060 83.120 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008478 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004015 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012031 0.00000