data_1JQS # _entry.id 1JQS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1JQS pdb_00001jqs 10.2210/pdb1jqs/pdb RCSB RCSB014080 ? ? WWPDB D_1000014080 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-09-07 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1JQS _pdbx_database_status.recvd_initial_deposition_date 2001-08-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1EG0 _pdbx_database_related.details ;Fitting of Components with Known Structure Into An 11.5A Cryo-EM Map Of the E.coli 70s Ribosome ; _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Agrawal, R.K.' 1 'Linde, J.' 2 'Segupta, J.' 3 'Nierhaus, K.H.' 4 'Frank, J.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Localization of L11 protein on the ribosome and elucidation of its involvement in EF-G-dependent translocation.' J.Mol.Biol. 311 777 787 2001 JMOBAK UK 0022-2836 0070 ? 11518530 10.1006/jmbi.2001.4907 1 'A Detailed View of a Ribosomal Active Site: The Structure of the L11-RNA Complex' 'Cell(Cambridge,Mass.)' 97 491 502 1999 CELLB5 US 0092-8674 0998 ? ? '10.1016/S0092-8674(00)80759-X' 2 'The Crystal Structure of Elongation Factor G Complexed with GDP, at 2.7A Resolution.' 'Embo J.' 13 3661 3668 1994 EMJODG UK 0261-4189 0897 ? ? ? 3 'Three-dimensional structure of the ribosomal translocase: Elongation factor G from Thermus thermophilus' 'Embo J.' 13 3669 3677 1994 EMJODG UK 0261-4189 0897 ? ? ? 4 'Structure of a Mutant EF-G Reveals Domain III and Possibly the Fusidic Acid Binding Site' J.Mol.Biol. 303 593 603 2000 JMOBAK UK 0022-2836 0070 ? ? 10.1006/jmbi.2000.4168 5 'EF-G-dependent GTP hydrolysis induces translocation accompanied by large conformational changes in the 70S ribosome' Nat.Struct.Biol. 6 643 647 1999 NSBIEW US 1072-8368 2024 ? ? 10.1038/10695 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Agrawal, R.K.' 1 ? primary 'Linde, J.' 2 ? primary 'Sengupta, J.' 3 ? primary 'Nierhaus, K.H.' 4 ? primary 'Frank, J.' 5 ? 1 'Wimberly, B.T.' 6 ? 1 'Guymon, R.' 7 ? 1 'McCutcheon, J.P.' 8 ? 1 'White, S.W.' 9 ? 1 'Ramakrishnan, V.' 10 ? 2 'Czworkowski, J.' 11 ? 2 'Wang, J.' 12 ? 2 'Steitz, T.A.' 13 ? 2 'Moore, P.B.' 14 ? 3 'AEvarsson, A.' 15 ? 3 'Brazhnikov, E.' 16 ? 3 'Garber, M.' 17 ? 3 'Zheltonosova, J.' 18 ? 3 'Chirgadze, Y.' 19 ? 3 'al-Karadaghi, S.' 20 ? 3 'Svensson, L.A.' 21 ? 3 'Liljas, A.' 22 ? 4 'Laurberg, M.' 23 ? 4 'Kristensen, O.' 24 ? 4 'Martemyanov, K.' 25 ? 4 'Gudkov, A.T.' 26 ? 4 'Nagaev, I.' 27 ? 4 'Hughes, D.' 28 ? 4 'Liljas, A.' 29 ? 5 'Agrawal, R.K.' 30 ? 5 'Heagle, A.B.' 31 ? 5 'Penczek, P.' 32 ? 5 'Grassucci, R.A.' 33 ? 5 'Frank, J.' 34 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat '50S Ribosomal protein L11' 14865.637 1 ? ? ? 'L11 from E. coli 70S ribosome modeled by crystal structure of L11 from Thermatogoma maritima' 2 polymer nat 'Elongation Factor G' 3599.001 1 ? ? ;part of domain G' ; 'EF-G from E. coli 70S ribosome modeled by crystal structure of EF-G from Thermus thermophilus' 3 polymer nat 'Elongation Factor G' 7637.778 1 ? ? 'domain V' 'EF-G from E. coli 70S ribosome modeled by crystal structure of EF-G from Thermus thermophilus' # loop_ _entity_name_com.entity_id _entity_name_com.name 2 'EF-G; translation elongation factor EF-G' 3 'EF-G; translation elongation factor EF-G' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;AKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKK AAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVV ; ;AKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKK AAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVV ; A ? 2 'polypeptide(L)' no no AADFDENIMLKYLEGEEPTEEELVAAIRKGTI AADFDENIMLKYLEGEEPTEEELVAAIRKGTI B ? 3 'polypeptide(L)' no no MRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFF MRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFF C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 LYS n 1 3 LYS n 1 4 VAL n 1 5 ALA n 1 6 ALA n 1 7 GLN n 1 8 ILE n 1 9 LYS n 1 10 LEU n 1 11 GLN n 1 12 LEU n 1 13 PRO n 1 14 ALA n 1 15 GLY n 1 16 LYS n 1 17 ALA n 1 18 THR n 1 19 PRO n 1 20 ALA n 1 21 PRO n 1 22 PRO n 1 23 VAL n 1 24 GLY n 1 25 PRO n 1 26 ALA n 1 27 LEU n 1 28 GLY n 1 29 GLN n 1 30 HIS n 1 31 GLY n 1 32 VAL n 1 33 ASN n 1 34 ILE n 1 35 MET n 1 36 GLU n 1 37 PHE n 1 38 CYS n 1 39 LYS n 1 40 ARG n 1 41 PHE n 1 42 ASN n 1 43 ALA n 1 44 GLU n 1 45 THR n 1 46 ALA n 1 47 ASP n 1 48 LYS n 1 49 ALA n 1 50 GLY n 1 51 MET n 1 52 ILE n 1 53 LEU n 1 54 PRO n 1 55 VAL n 1 56 VAL n 1 57 ILE n 1 58 THR n 1 59 VAL n 1 60 TYR n 1 61 GLU n 1 62 ASP n 1 63 LYS n 1 64 SER n 1 65 PHE n 1 66 THR n 1 67 PHE n 1 68 ILE n 1 69 ILE n 1 70 LYS n 1 71 THR n 1 72 PRO n 1 73 PRO n 1 74 ALA n 1 75 SER n 1 76 PHE n 1 77 LEU n 1 78 LEU n 1 79 LYS n 1 80 LYS n 1 81 ALA n 1 82 ALA n 1 83 GLY n 1 84 ILE n 1 85 GLU n 1 86 LYS n 1 87 GLY n 1 88 SER n 1 89 SER n 1 90 GLU n 1 91 PRO n 1 92 LYS n 1 93 ARG n 1 94 LYS n 1 95 ILE n 1 96 VAL n 1 97 GLY n 1 98 LYS n 1 99 VAL n 1 100 THR n 1 101 ARG n 1 102 LYS n 1 103 GLN n 1 104 ILE n 1 105 GLU n 1 106 GLU n 1 107 ILE n 1 108 ALA n 1 109 LYS n 1 110 THR n 1 111 LYS n 1 112 MET n 1 113 PRO n 1 114 ASP n 1 115 LEU n 1 116 ASN n 1 117 ALA n 1 118 ASN n 1 119 SER n 1 120 LEU n 1 121 GLU n 1 122 ALA n 1 123 ALA n 1 124 MET n 1 125 LYS n 1 126 ILE n 1 127 ILE n 1 128 GLU n 1 129 GLY n 1 130 THR n 1 131 ALA n 1 132 LYS n 1 133 SER n 1 134 MET n 1 135 GLY n 1 136 ILE n 1 137 GLU n 1 138 VAL n 1 139 VAL n 2 1 ALA n 2 2 ALA n 2 3 ASP n 2 4 PHE n 2 5 ASP n 2 6 GLU n 2 7 ASN n 2 8 ILE n 2 9 MET n 2 10 LEU n 2 11 LYS n 2 12 TYR n 2 13 LEU n 2 14 GLU n 2 15 GLY n 2 16 GLU n 2 17 GLU n 2 18 PRO n 2 19 THR n 2 20 GLU n 2 21 GLU n 2 22 GLU n 2 23 LEU n 2 24 VAL n 2 25 ALA n 2 26 ALA n 2 27 ILE n 2 28 ARG n 2 29 LYS n 2 30 GLY n 2 31 THR n 2 32 ILE n 3 1 MET n 3 2 ARG n 3 3 VAL n 3 4 GLU n 3 5 VAL n 3 6 THR n 3 7 THR n 3 8 PRO n 3 9 GLU n 3 10 GLU n 3 11 TYR n 3 12 MET n 3 13 GLY n 3 14 ASP n 3 15 VAL n 3 16 ILE n 3 17 GLY n 3 18 ASP n 3 19 LEU n 3 20 ASN n 3 21 ALA n 3 22 ARG n 3 23 ARG n 3 24 GLY n 3 25 GLN n 3 26 ILE n 3 27 LEU n 3 28 GLY n 3 29 MET n 3 30 GLU n 3 31 PRO n 3 32 ARG n 3 33 GLY n 3 34 ASN n 3 35 ALA n 3 36 GLN n 3 37 VAL n 3 38 ILE n 3 39 ARG n 3 40 ALA n 3 41 PHE n 3 42 VAL n 3 43 PRO n 3 44 LEU n 3 45 ALA n 3 46 GLU n 3 47 MET n 3 48 PHE n 3 49 GLY n 3 50 TYR n 3 51 ALA n 3 52 THR n 3 53 ASP n 3 54 LEU n 3 55 ARG n 3 56 SER n 3 57 LYS n 3 58 THR n 3 59 GLN n 3 60 GLY n 3 61 ARG n 3 62 GLY n 3 63 SER n 3 64 PHE n 3 65 VAL n 3 66 MET n 3 67 PHE n 3 68 PHE n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 -5 ? ? ? A . n A 1 2 LYS 2 -4 ? ? ? A . n A 1 3 LYS 3 -3 ? ? ? A . n A 1 4 VAL 4 -2 ? ? ? A . n A 1 5 ALA 5 -1 ? ? ? A . n A 1 6 ALA 6 0 ? ? ? A . n A 1 7 GLN 7 1 1 GLN GLN A . n A 1 8 ILE 8 2 2 ILE ILE A . n A 1 9 LYS 9 3 3 LYS LYS A . n A 1 10 LEU 10 4 4 LEU LEU A . n A 1 11 GLN 11 5 5 GLN GLN A . n A 1 12 LEU 12 6 6 LEU LEU A . n A 1 13 PRO 13 7 7 PRO PRO A . n A 1 14 ALA 14 8 8 ALA ALA A . n A 1 15 GLY 15 9 9 GLY GLY A . n A 1 16 LYS 16 10 10 LYS LYS A . n A 1 17 ALA 17 11 11 ALA ALA A . n A 1 18 THR 18 12 12 THR THR A . n A 1 19 PRO 19 13 13 PRO PRO A . n A 1 20 ALA 20 14 14 ALA ALA A . n A 1 21 PRO 21 15 15 PRO PRO A . n A 1 22 PRO 22 16 16 PRO PRO A . n A 1 23 VAL 23 17 17 VAL VAL A . n A 1 24 GLY 24 18 18 GLY GLY A . n A 1 25 PRO 25 19 19 PRO PRO A . n A 1 26 ALA 26 20 20 ALA ALA A . n A 1 27 LEU 27 21 21 LEU LEU A . n A 1 28 GLY 28 22 22 GLY GLY A . n A 1 29 GLN 29 23 23 GLN GLN A . n A 1 30 HIS 30 24 24 HIS HIS A . n A 1 31 GLY 31 25 25 GLY GLY A . n A 1 32 VAL 32 26 26 VAL VAL A . n A 1 33 ASN 33 27 27 ASN ASN A . n A 1 34 ILE 34 28 28 ILE ILE A . n A 1 35 MET 35 29 29 MET MET A . n A 1 36 GLU 36 30 30 GLU GLU A . n A 1 37 PHE 37 31 31 PHE PHE A . n A 1 38 CYS 38 32 32 CYS CYS A . n A 1 39 LYS 39 33 33 LYS LYS A . n A 1 40 ARG 40 34 34 ARG ARG A . n A 1 41 PHE 41 35 35 PHE PHE A . n A 1 42 ASN 42 36 36 ASN ASN A . n A 1 43 ALA 43 37 37 ALA ALA A . n A 1 44 GLU 44 38 38 GLU GLU A . n A 1 45 THR 45 39 39 THR THR A . n A 1 46 ALA 46 40 40 ALA ALA A . n A 1 47 ASP 47 41 41 ASP ASP A . n A 1 48 LYS 48 42 42 LYS LYS A . n A 1 49 ALA 49 43 43 ALA ALA A . n A 1 50 GLY 50 44 44 GLY GLY A . n A 1 51 MET 51 45 45 MET MET A . n A 1 52 ILE 52 46 46 ILE ILE A . n A 1 53 LEU 53 47 47 LEU LEU A . n A 1 54 PRO 54 48 48 PRO PRO A . n A 1 55 VAL 55 49 49 VAL VAL A . n A 1 56 VAL 56 50 50 VAL VAL A . n A 1 57 ILE 57 51 51 ILE ILE A . n A 1 58 THR 58 52 52 THR THR A . n A 1 59 VAL 59 53 53 VAL VAL A . n A 1 60 TYR 60 54 54 TYR TYR A . n A 1 61 GLU 61 55 55 GLU GLU A . n A 1 62 ASP 62 56 56 ASP ASP A . n A 1 63 LYS 63 57 57 LYS LYS A . n A 1 64 SER 64 58 58 SER SER A . n A 1 65 PHE 65 59 59 PHE PHE A . n A 1 66 THR 66 60 60 THR THR A . n A 1 67 PHE 67 61 61 PHE PHE A . n A 1 68 ILE 68 62 62 ILE ILE A . n A 1 69 ILE 69 63 63 ILE ILE A . n A 1 70 LYS 70 64 64 LYS LYS A . n A 1 71 THR 71 65 65 THR THR A . n A 1 72 PRO 72 66 66 PRO PRO A . n A 1 73 PRO 73 67 67 PRO PRO A . n A 1 74 ALA 74 68 68 ALA ALA A . n A 1 75 SER 75 69 69 SER SER A . n A 1 76 PHE 76 70 70 PHE PHE A . n A 1 77 LEU 77 71 71 LEU LEU A . n A 1 78 LEU 78 72 72 LEU LEU A . n A 1 79 LYS 79 73 73 LYS LYS A . n A 1 80 LYS 80 74 74 LYS LYS A . n A 1 81 ALA 81 75 75 ALA ALA A . n A 1 82 ALA 82 76 76 ALA ALA A . n A 1 83 GLY 83 77 77 GLY GLY A . n A 1 84 ILE 84 78 78 ILE ILE A . n A 1 85 GLU 85 79 79 GLU GLU A . n A 1 86 LYS 86 80 80 LYS LYS A . n A 1 87 GLY 87 81 81 GLY GLY A . n A 1 88 SER 88 82 82 SER SER A . n A 1 89 SER 89 83 83 SER SER A . n A 1 90 GLU 90 84 84 GLU GLU A . n A 1 91 PRO 91 85 85 PRO PRO A . n A 1 92 LYS 92 86 86 LYS LYS A . n A 1 93 ARG 93 87 87 ARG ARG A . n A 1 94 LYS 94 88 88 LYS LYS A . n A 1 95 ILE 95 89 89 ILE ILE A . n A 1 96 VAL 96 90 90 VAL VAL A . n A 1 97 GLY 97 91 91 GLY GLY A . n A 1 98 LYS 98 92 92 LYS LYS A . n A 1 99 VAL 99 93 93 VAL VAL A . n A 1 100 THR 100 94 94 THR THR A . n A 1 101 ARG 101 95 95 ARG ARG A . n A 1 102 LYS 102 96 96 LYS LYS A . n A 1 103 GLN 103 97 97 GLN GLN A . n A 1 104 ILE 104 98 98 ILE ILE A . n A 1 105 GLU 105 99 99 GLU GLU A . n A 1 106 GLU 106 100 100 GLU GLU A . n A 1 107 ILE 107 101 101 ILE ILE A . n A 1 108 ALA 108 102 102 ALA ALA A . n A 1 109 LYS 109 103 103 LYS LYS A . n A 1 110 THR 110 104 104 THR THR A . n A 1 111 LYS 111 105 105 LYS LYS A . n A 1 112 MET 112 106 106 MET MET A . n A 1 113 PRO 113 107 107 PRO PRO A . n A 1 114 ASP 114 108 108 ASP ASP A . n A 1 115 LEU 115 109 109 LEU LEU A . n A 1 116 ASN 116 110 110 ASN ASN A . n A 1 117 ALA 117 111 111 ALA ALA A . n A 1 118 ASN 118 112 112 ASN ASN A . n A 1 119 SER 119 113 113 SER SER A . n A 1 120 LEU 120 114 114 LEU LEU A . n A 1 121 GLU 121 115 115 GLU GLU A . n A 1 122 ALA 122 116 116 ALA ALA A . n A 1 123 ALA 123 117 117 ALA ALA A . n A 1 124 MET 124 118 118 MET MET A . n A 1 125 LYS 125 119 119 LYS LYS A . n A 1 126 ILE 126 120 120 ILE ILE A . n A 1 127 ILE 127 121 121 ILE ILE A . n A 1 128 GLU 128 122 122 GLU GLU A . n A 1 129 GLY 129 123 123 GLY GLY A . n A 1 130 THR 130 124 124 THR THR A . n A 1 131 ALA 131 125 125 ALA ALA A . n A 1 132 LYS 132 126 126 LYS LYS A . n A 1 133 SER 133 127 127 SER SER A . n A 1 134 MET 134 128 128 MET MET A . n A 1 135 GLY 135 129 129 GLY GLY A . n A 1 136 ILE 136 130 130 ILE ILE A . n A 1 137 GLU 137 131 131 GLU GLU A . n A 1 138 VAL 138 132 132 VAL VAL A . n A 1 139 VAL 139 133 133 VAL VAL A . n B 2 1 ALA 1 220 220 ALA ALA B . n B 2 2 ALA 2 221 221 ALA ALA B . n B 2 3 ASP 3 222 222 ASP ASP B . n B 2 4 PHE 4 223 223 PHE PHE B . n B 2 5 ASP 5 224 224 ASP ASP B . n B 2 6 GLU 6 225 225 GLU GLU B . n B 2 7 ASN 7 226 226 ASN ASN B . n B 2 8 ILE 8 227 227 ILE ILE B . n B 2 9 MET 9 228 228 MET MET B . n B 2 10 LEU 10 229 229 LEU LEU B . n B 2 11 LYS 11 230 230 LYS LYS B . n B 2 12 TYR 12 231 231 TYR TYR B . n B 2 13 LEU 13 232 232 LEU LEU B . n B 2 14 GLU 14 233 233 GLU GLU B . n B 2 15 GLY 15 234 234 GLY GLY B . n B 2 16 GLU 16 235 235 GLU GLU B . n B 2 17 GLU 17 236 236 GLU GLU B . n B 2 18 PRO 18 237 237 PRO PRO B . n B 2 19 THR 19 238 238 THR THR B . n B 2 20 GLU 20 239 239 GLU GLU B . n B 2 21 GLU 21 240 240 GLU GLU B . n B 2 22 GLU 22 241 241 GLU GLU B . n B 2 23 LEU 23 242 242 LEU LEU B . n B 2 24 VAL 24 243 243 VAL VAL B . n B 2 25 ALA 25 244 244 ALA ALA B . n B 2 26 ALA 26 245 245 ALA ALA B . n B 2 27 ILE 27 246 246 ILE ILE B . n B 2 28 ARG 28 247 247 ARG ARG B . n B 2 29 LYS 29 248 248 LYS LYS B . n B 2 30 GLY 30 249 249 GLY GLY B . n B 2 31 THR 31 250 250 THR THR B . n B 2 32 ILE 32 251 251 ILE ILE B . n C 3 1 MET 1 606 606 MET MET C . n C 3 2 ARG 2 607 607 ARG ARG C . n C 3 3 VAL 3 608 608 VAL VAL C . n C 3 4 GLU 4 609 609 GLU GLU C . n C 3 5 VAL 5 610 610 VAL VAL C . n C 3 6 THR 6 611 611 THR THR C . n C 3 7 THR 7 612 612 THR THR C . n C 3 8 PRO 8 613 613 PRO PRO C . n C 3 9 GLU 9 614 614 GLU GLU C . n C 3 10 GLU 10 615 615 GLU GLU C . n C 3 11 TYR 11 616 616 TYR TYR C . n C 3 12 MET 12 617 617 MET MET C . n C 3 13 GLY 13 618 618 GLY GLY C . n C 3 14 ASP 14 619 619 ASP ASP C . n C 3 15 VAL 15 620 620 VAL VAL C . n C 3 16 ILE 16 621 621 ILE ILE C . n C 3 17 GLY 17 622 622 GLY GLY C . n C 3 18 ASP 18 623 623 ASP ASP C . n C 3 19 LEU 19 624 624 LEU LEU C . n C 3 20 ASN 20 625 625 ASN ASN C . n C 3 21 ALA 21 626 626 ALA ALA C . n C 3 22 ARG 22 627 627 ARG ARG C . n C 3 23 ARG 23 628 628 ARG ARG C . n C 3 24 GLY 24 629 629 GLY GLY C . n C 3 25 GLN 25 630 630 GLN GLN C . n C 3 26 ILE 26 631 631 ILE ILE C . n C 3 27 LEU 27 632 632 LEU LEU C . n C 3 28 GLY 28 633 633 GLY GLY C . n C 3 29 MET 29 634 634 MET MET C . n C 3 30 GLU 30 635 635 GLU GLU C . n C 3 31 PRO 31 636 636 PRO PRO C . n C 3 32 ARG 32 637 637 ARG ARG C . n C 3 33 GLY 33 638 638 GLY GLY C . n C 3 34 ASN 34 639 639 ASN ASN C . n C 3 35 ALA 35 640 640 ALA ALA C . n C 3 36 GLN 36 641 641 GLN GLN C . n C 3 37 VAL 37 642 642 VAL VAL C . n C 3 38 ILE 38 643 643 ILE ILE C . n C 3 39 ARG 39 644 644 ARG ARG C . n C 3 40 ALA 40 645 645 ALA ALA C . n C 3 41 PHE 41 646 646 PHE PHE C . n C 3 42 VAL 42 647 647 VAL VAL C . n C 3 43 PRO 43 648 648 PRO PRO C . n C 3 44 LEU 44 649 649 LEU LEU C . n C 3 45 ALA 45 650 650 ALA ALA C . n C 3 46 GLU 46 651 651 GLU GLU C . n C 3 47 MET 47 652 652 MET MET C . n C 3 48 PHE 48 653 653 PHE PHE C . n C 3 49 GLY 49 654 654 GLY GLY C . n C 3 50 TYR 50 655 655 TYR TYR C . n C 3 51 ALA 51 656 656 ALA ALA C . n C 3 52 THR 52 657 657 THR THR C . n C 3 53 ASP 53 658 658 ASP ASP C . n C 3 54 LEU 54 659 659 LEU LEU C . n C 3 55 ARG 55 660 660 ARG ARG C . n C 3 56 SER 56 661 661 SER SER C . n C 3 57 LYS 57 662 662 LYS LYS C . n C 3 58 THR 58 663 663 THR THR C . n C 3 59 GLN 59 664 664 GLN GLN C . n C 3 60 GLY 60 665 665 GLY GLY C . n C 3 61 ARG 61 666 666 ARG ARG C . n C 3 62 GLY 62 667 667 GLY GLY C . n C 3 63 SER 63 668 668 SER SER C . n C 3 64 PHE 64 669 669 PHE PHE C . n C 3 65 VAL 65 670 670 VAL VAL C . n C 3 66 MET 66 671 671 MET MET C . n C 3 67 PHE 67 672 672 PHE PHE C . n C 3 68 PHE 68 673 673 PHE PHE C . n # _exptl.entry_id 1JQS _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 233 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 233 _refine_hist.d_res_high . _refine_hist.d_res_low . # _struct.entry_id 1JQS _struct.title ;Fitting of L11 protein and elongation factor G (domain G' and V) in the cryo-em map of E. coli 70S ribosome bound with EF-G and GMPPCP, a nonhydrolysable GTP analog ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1JQS _struct_keywords.pdbx_keywords RIBOSOME _struct_keywords.text 'L11, EF-G, cryo-EM, 70S E.coli ribosome, GTP state, RIBOSOME' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 1 UNP RL11_THEMA P29395 1 ;AKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKK AAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVV ; ? 2 2 UNP EFG_THETH P13551 220 AADFDENIMLKYLEGEEPTEEELVAAIRKGTI ? 3 3 UNP EFG_THETH P13551 606 MRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFF ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1JQS A 1 ? 139 ? P29395 1 ? 139 ? -5 133 2 2 1JQS B 1 ? 32 ? P13551 220 ? 251 ? 220 251 3 3 1JQS C 1 ? 68 ? P13551 606 ? 673 ? 606 673 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_nmr_details.entry_id 1JQS _pdbx_nmr_details.text ;This structure was generated by fitting the X-ray crystal structures of L11 and EF-G into the 70S E. coli EF-G (GTP form) bound ribosome map. L11(linker region between N and C terminal) and EF-G positions of domains G' and V were modeled to accommodate the conformational changes. ; # _pdbx_nmr_refine.entry_id 1JQS _pdbx_nmr_refine.method 'Molecular Modeling based on crystal structures' _pdbx_nmr_refine.details ;Conformational changes occur in protein L11 and EF-G due to the binding of EF-G to the 70S ribosome. These changed conformations were modeled based on the fitting of the crystal coordinates to the low resolution ribosome map (factor-bound) and energy minimizing the fitted structures. ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal 'IRIS Explorer' 3.5 'data analysis' 'Numerical Algorithms Group, Inc' 1 O 5.10 'data analysis' 'Jones, Zou, Cowan, Kjeldgaard' 2 SPIDER 4.48 processing Frank 3 'Insight II' 1998 'data analysis' 'Biosym/MSI Inc.' 4 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 1JQS _em_3d_fitting.ref_protocol OTHER _em_3d_fitting.ref_space REAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria 'VISUAL AGREEMENT' _em_3d_fitting.details ;REFINEMENT PROTOCOL--MANUAL DETAILS--This structure was generated by fitting the X-ray crystal structure of L11 and EF-G into the 70S E. coli EF-G (GTP form) bound ribosome electron microscopy map. L11 (linker region between N and C terminal) and EF-G positions of domains G and V were modeled to accommodate the conformational changes. Conformational changes occur in protein L11 and EF-G due to the binding of EF-G to the 70S ribosome. These changed conformations were modeled based on the fitting of the crystal coordinates to the low resolution ribosome map (factor-bound) and energy minimizing the fitted structures. ; _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 1JQS _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.resolution 18 _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution_method 'FSC 0.5 CUT-OFF' _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 36113 _em_3d_reconstruction.algorithm ? # _em_entity_assembly.id 1 _em_entity_assembly.name 'E. coli 70S ribosome bound with EF-G and GMPPCP' _em_entity_assembly.type RIBOSOME _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details ? _em_entity_assembly.entity_id_list ? _em_entity_assembly.source ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 1JQS _em_image_scans.id 1 _em_image_scans.number_digital_images ? _em_image_scans.citation_id ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.sampling_size ? _em_image_scans.scanner_model 'PERKIN ELMER' _em_image_scans.details ? _em_image_scans.image_recording_id 1 _em_image_scans.dimension_height ? _em_image_scans.dimension_width ? _em_image_scans.frames_per_image ? # _em_imaging.entry_id 1JQS _em_imaging.id 1 _em_imaging.specimen_id 1 _em_imaging.date ? _em_imaging.temperature ? _em_imaging.microscope_model 'FEI/PHILIPS EM420' _em_imaging.nominal_defocus_min ? _em_imaging.nominal_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_cs ? _em_imaging.mode 'BRIGHT FIELD' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.nominal_magnification 52000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source OTHER _em_imaging.accelerating_voltage . _em_imaging.details ? _em_imaging.specimen_holder_type . _em_imaging.specimen_holder_model 'GATAN LIQUID NITROGEN' _em_imaging.citation_id ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.calibrated_defocus_max ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_min ? _em_imaging.cryogen ? _em_imaging.residual_tilt ? # _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entry_id 1JQS _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 1JQS _em_single_particle_entity.id 1 _em_single_particle_entity.point_symmetry C1 _em_single_particle_entity.image_processing_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA -5 ? A ALA 1 2 1 Y 1 A LYS -4 ? A LYS 2 3 1 Y 1 A LYS -3 ? A LYS 3 4 1 Y 1 A VAL -2 ? A VAL 4 5 1 Y 1 A ALA -1 ? A ALA 5 6 1 Y 1 A ALA 0 ? A ALA 6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TYR N N N N 318 TYR CA C N S 319 TYR C C N N 320 TYR O O N N 321 TYR CB C N N 322 TYR CG C Y N 323 TYR CD1 C Y N 324 TYR CD2 C Y N 325 TYR CE1 C Y N 326 TYR CE2 C Y N 327 TYR CZ C Y N 328 TYR OH O N N 329 TYR OXT O N N 330 TYR H H N N 331 TYR H2 H N N 332 TYR HA H N N 333 TYR HB2 H N N 334 TYR HB3 H N N 335 TYR HD1 H N N 336 TYR HD2 H N N 337 TYR HE1 H N N 338 TYR HE2 H N N 339 TYR HH H N N 340 TYR HXT H N N 341 VAL N N N N 342 VAL CA C N S 343 VAL C C N N 344 VAL O O N N 345 VAL CB C N N 346 VAL CG1 C N N 347 VAL CG2 C N N 348 VAL OXT O N N 349 VAL H H N N 350 VAL H2 H N N 351 VAL HA H N N 352 VAL HB H N N 353 VAL HG11 H N N 354 VAL HG12 H N N 355 VAL HG13 H N N 356 VAL HG21 H N N 357 VAL HG22 H N N 358 VAL HG23 H N N 359 VAL HXT H N N 360 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TYR N CA sing N N 304 TYR N H sing N N 305 TYR N H2 sing N N 306 TYR CA C sing N N 307 TYR CA CB sing N N 308 TYR CA HA sing N N 309 TYR C O doub N N 310 TYR C OXT sing N N 311 TYR CB CG sing N N 312 TYR CB HB2 sing N N 313 TYR CB HB3 sing N N 314 TYR CG CD1 doub Y N 315 TYR CG CD2 sing Y N 316 TYR CD1 CE1 sing Y N 317 TYR CD1 HD1 sing N N 318 TYR CD2 CE2 doub Y N 319 TYR CD2 HD2 sing N N 320 TYR CE1 CZ doub Y N 321 TYR CE1 HE1 sing N N 322 TYR CE2 CZ sing Y N 323 TYR CE2 HE2 sing N N 324 TYR CZ OH sing N N 325 TYR OH HH sing N N 326 TYR OXT HXT sing N N 327 VAL N CA sing N N 328 VAL N H sing N N 329 VAL N H2 sing N N 330 VAL CA C sing N N 331 VAL CA CB sing N N 332 VAL CA HA sing N N 333 VAL C O doub N N 334 VAL C OXT sing N N 335 VAL CB CG1 sing N N 336 VAL CB CG2 sing N N 337 VAL CB HB sing N N 338 VAL CG1 HG11 sing N N 339 VAL CG1 HG12 sing N N 340 VAL CG1 HG13 sing N N 341 VAL CG2 HG21 sing N N 342 VAL CG2 HG22 sing N N 343 VAL CG2 HG23 sing N N 344 VAL OXT HXT sing N N 345 # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.film_or_detector_model 'GENERIC FILM' _em_image_recording.avg_electron_dose_per_image 10 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_real_images ? _em_image_recording.detector_mode ? # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 36113 _em_particle_selection.reference_model ? # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration ? _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # loop_ _pdbx_coordinate_model.asym_id _pdbx_coordinate_model.type A 'CA ATOMS ONLY' B 'CA ATOMS ONLY' C 'CA ATOMS ONLY' # _atom_sites.entry_id 1JQS _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # _atom_type.symbol C # loop_