HEADER RIBOSOME 07-AUG-01 1JQS TITLE FITTING OF L11 PROTEIN AND ELONGATION FACTOR G (DOMAIN G' TITLE 2 AND V) IN THE CRYO-EM MAP OF E. COLI 70S RIBOSOME BOUND TITLE 3 WITH EF-G AND GMPPCP, A NONHYDROLYSABLE GTP ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L11; COMPND 3 CHAIN: A; COMPND 4 OTHER_DETAILS: L11 FROM E. COLI 70S RIBOSOME MODELED BY COMPND 5 CRYSTAL STRUCTURE OF L11 FROM THERMATOGOMA MARITIMA; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ELONGATION FACTOR G; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: PART OF DOMAIN G'; COMPND 10 SYNONYM: EF-G; TRANSLATION ELONGATION FACTOR EF-G; COMPND 11 OTHER_DETAILS: EF-G FROM E. COLI 70S RIBOSOME MODELED BY COMPND 12 CRYSTAL STRUCTURE OF EF-G FROM THERMUS THERMOPHILUS; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: ELONGATION FACTOR G; COMPND 15 CHAIN: C; COMPND 16 FRAGMENT: DOMAIN V; COMPND 17 SYNONYM: EF-G; TRANSLATION ELONGATION FACTOR EF-G; COMPND 18 OTHER_DETAILS: EF-G FROM E. COLI 70S RIBOSOME MODELED BY COMPND 19 CRYSTAL STRUCTURE OF EF-G FROM THERMUS THERMOPHILUS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 6 ORGANISM_TAXID: 562; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 9 ORGANISM_TAXID: 562 KEYWDS L11, EF-G, CRYO-EM, 70S E.COLI RIBOSOME, GTP STATE EXPDTA ELECTRON MICROSCOPY MDLTYP CA ATOMS ONLY, CHAIN A, B, C AUTHOR R.K.AGRAWAL,J.LINDE,J.SEGUPTA,K.H.NIERHAUS,J.FRANK REVDAT 4 24-FEB-09 1JQS 1 VERSN REVDAT 3 01-APR-03 1JQS 1 JRNL REVDAT 2 14-JUN-02 1JQS 1 REMARK REVDAT 1 07-SEP-01 1JQS 0 JRNL AUTH R.K.AGRAWAL,J.LINDE,J.SENGUPTA,K.H.NIERHAUS,J.FRANK JRNL TITL LOCALIZATION OF L11 PROTEIN ON THE RIBOSOME AND JRNL TITL 2 ELUCIDATION OF ITS INVOLVEMENT IN EF-G-DEPENDENT JRNL TITL 3 TRANSLOCATION. JRNL REF J.MOL.BIOL. V. 311 777 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11518530 JRNL DOI 10.1006/JMBI.2001.4907 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH B.T.WIMBERLY,R.GUYMON,J.P.MCCUTCHEON,S.W.WHITE, REMARK 1 AUTH 2 V.RAMAKRISHNAN REMARK 1 TITL A DETAILED VIEW OF A RIBOSOMAL ACTIVE SITE: THE REMARK 1 TITL 2 STRUCTURE OF THE L11-RNA COMPLEX REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 97 491 1999 REMARK 1 REFN ISSN 0092-8674 REMARK 1 DOI 10.1016/S0092-8674(00)80759-X REMARK 1 REFERENCE 2 REMARK 1 AUTH J.CZWORKOWSKI,J.WANG,T.A.STEITZ,P.B.MOORE REMARK 1 TITL THE CRYSTAL STRUCTURE OF ELONGATION FACTOR G REMARK 1 TITL 2 COMPLEXED WITH GDP, AT 2.7A RESOLUTION. REMARK 1 REF EMBO J. V. 13 3661 1994 REMARK 1 REFN ISSN 0261-4189 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.AEVARSSON,E.BRAZHNIKOV,M.GARBER,J.ZHELTONOSOVA, REMARK 1 AUTH 2 Y.CHIRGADZE,S.AL-KARADAGHI,L.A.SVENSSON,A.LILJAS REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF THE RIBOSOMAL REMARK 1 TITL 2 TRANSLOCASE: ELONGATION FACTOR G FROM THERMUS REMARK 1 TITL 3 THERMOPHILUS REMARK 1 REF EMBO J. V. 13 3669 1994 REMARK 1 REFN ISSN 0261-4189 REMARK 1 REFERENCE 4 REMARK 1 AUTH M.LAURBERG,O.KRISTENSEN,K.MARTEMYANOV,A.T.GUDKOV, REMARK 1 AUTH 2 I.NAGAEV,D.HUGHES,A.LILJAS REMARK 1 TITL STRUCTURE OF A MUTANT EF-G REVEALS DOMAIN III AND REMARK 1 TITL 2 POSSIBLY THE FUSIDIC ACID BINDING SITE REMARK 1 REF J.MOL.BIOL. V. 303 593 2000 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.2000.4168 REMARK 1 REFERENCE 5 REMARK 1 AUTH R.K.AGRAWAL,A.B.HEAGLE,P.PENCZEK,R.A.GRASSUCCI, REMARK 1 AUTH 2 J.FRANK REMARK 1 TITL EF-G-DEPENDENT GTP HYDROLYSIS INDUCES REMARK 1 TITL 2 TRANSLOCATION ACCOMPANIED BY LARGE CONFORMATIONAL REMARK 1 TITL 3 CHANGES IN THE 70S RIBOSOME REMARK 1 REF NAT.STRUCT.BIOL. V. 6 643 1999 REMARK 1 REFN ISSN 1072-8368 REMARK 1 DOI 10.1038/10695 REMARK 2 REMARK 2 RESOLUTION. NULL ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : MANUAL REMARK 3 REFINEMENT TARGET : VISUAL AGREEMENT REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : NULL REMARK 3 NUMBER OF PARTICLES : NULL REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 1JQS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-SEP-01. REMARK 100 THE RCSB ID CODE IS RCSB014080. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : ASYMMETRIC REMARK 245 NAME OF SAMPLE : NULL REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : NULL REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : NULL REMARK 245 DETECTOR TYPE : NULL REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : NULL REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : NULL REMARK 245 ILLUMINATION MODE : NULL REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : NULL REMARK 245 ACCELERATION VOLTAGE (KV) : NULL REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -5 REMARK 465 LYS A -4 REMARK 465 LYS A -3 REMARK 465 VAL A -2 REMARK 465 ALA A -1 REMARK 465 ALA A 0 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EG0 RELATED DB: PDB REMARK 900 FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5A REMARK 900 CRYO-EM MAP OF THE E.COLI 70S RIBOSOME DBREF 1JQS A -5 133 UNP P29395 RL11_THEMA 1 139 DBREF 1JQS B 220 251 UNP P13551 EFG_THETH 220 251 DBREF 1JQS C 606 673 UNP P13551 EFG_THETH 606 673 SEQRES 1 A 139 ALA LYS LYS VAL ALA ALA GLN ILE LYS LEU GLN LEU PRO SEQRES 2 A 139 ALA GLY LYS ALA THR PRO ALA PRO PRO VAL GLY PRO ALA SEQRES 3 A 139 LEU GLY GLN HIS GLY VAL ASN ILE MET GLU PHE CYS LYS SEQRES 4 A 139 ARG PHE ASN ALA GLU THR ALA ASP LYS ALA GLY MET ILE SEQRES 5 A 139 LEU PRO VAL VAL ILE THR VAL TYR GLU ASP LYS SER PHE SEQRES 6 A 139 THR PHE ILE ILE LYS THR PRO PRO ALA SER PHE LEU LEU SEQRES 7 A 139 LYS LYS ALA ALA GLY ILE GLU LYS GLY SER SER GLU PRO SEQRES 8 A 139 LYS ARG LYS ILE VAL GLY LYS VAL THR ARG LYS GLN ILE SEQRES 9 A 139 GLU GLU ILE ALA LYS THR LYS MET PRO ASP LEU ASN ALA SEQRES 10 A 139 ASN SER LEU GLU ALA ALA MET LYS ILE ILE GLU GLY THR SEQRES 11 A 139 ALA LYS SER MET GLY ILE GLU VAL VAL SEQRES 1 B 32 ALA ALA ASP PHE ASP GLU ASN ILE MET LEU LYS TYR LEU SEQRES 2 B 32 GLU GLY GLU GLU PRO THR GLU GLU GLU LEU VAL ALA ALA SEQRES 3 B 32 ILE ARG LYS GLY THR ILE SEQRES 1 C 68 MET ARG VAL GLU VAL THR THR PRO GLU GLU TYR MET GLY SEQRES 2 C 68 ASP VAL ILE GLY ASP LEU ASN ALA ARG ARG GLY GLN ILE SEQRES 3 C 68 LEU GLY MET GLU PRO ARG GLY ASN ALA GLN VAL ILE ARG SEQRES 4 C 68 ALA PHE VAL PRO LEU ALA GLU MET PHE GLY TYR ALA THR SEQRES 5 C 68 ASP LEU ARG SER LYS THR GLN GLY ARG GLY SER PHE VAL SEQRES 6 C 68 MET PHE PHE CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000