HEADER HYDROLASE 10-AUG-01 1JR6 TITLE SOLUTION STRUCTURE OF AN ENGINEERED ARGININE-RICH SUBDOMAIN 2 OF THE TITLE 2 HEPATITIS C VIRUS NS3 RNA HELICASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HELICASE NS3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ARGININE-RICH SUBDOMAIN 2; COMPND 5 EC: 3.4.21.98; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 3 ORGANISM_TAXID: 11103; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PNS3D2DELTA KEYWDS ALPHA-BETA-ALPHA, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR D.LIU,D.F.WYSS,Y.S.WANG,J.J.GESELL REVDAT 4 22-MAY-24 1JR6 1 REMARK REVDAT 3 23-FEB-22 1JR6 1 REMARK SEQADV REVDAT 2 24-FEB-09 1JR6 1 VERSN REVDAT 1 10-AUG-02 1JR6 0 JRNL AUTH D.LIU,Y.S.WANG,J.J.GESELL,D.F.WYSS JRNL TITL SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF AN ENGINEERED JRNL TITL 2 ARGININE-RICH SUBDOMAIN 2 OF THE HEPATITIS C VIRUS NS3 RNA JRNL TITL 3 HELICASE. JRNL REF J.MOL.BIOL. V. 314 543 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11846566 JRNL DOI 10.1006/JMBI.2001.5146 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 98.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CALCULATION WAS BASED ON A TOTAL OF REMARK 3 2397 INTERPROTON DISTANCE RESTRAINTS, 76 HYDROGEN BOND REMARK 3 RESTRAINTS, 181 DIHEDRAL ANGLE RESTRAINTS. REMARK 4 REMARK 4 1JR6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-AUG-01. REMARK 100 THE DEPOSITION ID IS D_1000014094. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 75 MM KIPO4 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM, U-15N,13C;; 0.6 MM, U REMARK 210 -15N,13C;; 0.3 MM, U-15N REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 4.0, FELIX 97 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-25 REMARK 465 RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 113 H GLN A 117 1.53 REMARK 500 O ARG A 115 H ARG A 119 1.57 REMARK 500 O LEU A 30 H LYS A 34 1.58 REMARK 500 H ILE A 40 O VAL A 82 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 6 -169.22 -69.12 REMARK 500 1 HIS A 7 79.44 175.68 REMARK 500 1 PHE A 23 96.26 -160.83 REMARK 500 1 PRO A 75 42.22 -92.58 REMARK 500 1 THR A 85 -126.09 -84.15 REMARK 500 1 ASP A 86 40.30 -101.41 REMARK 500 1 MET A 89 -150.52 53.71 REMARK 500 1 THR A 90 31.51 -150.62 REMARK 500 1 THR A 93 -154.78 -90.55 REMARK 500 1 ASN A 103 26.13 47.08 REMARK 500 1 ASP A 106 29.09 49.41 REMARK 500 1 GLN A 110 150.19 -49.21 REMARK 500 1 ARG A 121 -45.39 -164.70 REMARK 500 1 ALA A 134 96.75 54.24 REMARK 500 2 HIS A 7 76.55 170.71 REMARK 500 2 TYR A 24 81.66 -58.16 REMARK 500 2 SER A 72 -35.20 -132.63 REMARK 500 2 PRO A 75 39.16 -87.37 REMARK 500 2 THR A 76 46.88 -144.17 REMARK 500 2 ASN A 77 26.90 -142.26 REMARK 500 2 THR A 85 -136.02 -93.30 REMARK 500 2 ASP A 86 46.66 -86.38 REMARK 500 2 THR A 90 -118.89 33.92 REMARK 500 2 THR A 93 -154.41 -67.63 REMARK 500 2 ASN A 103 18.78 50.89 REMARK 500 2 GLN A 110 -177.16 -57.66 REMARK 500 2 ARG A 121 -43.52 -151.39 REMARK 500 3 HIS A 7 84.21 -176.55 REMARK 500 3 PRO A 8 83.21 -66.98 REMARK 500 3 ASN A 9 -36.99 -172.73 REMARK 500 3 PHE A 23 -169.57 -112.96 REMARK 500 3 TYR A 24 82.28 -59.44 REMARK 500 3 SER A 72 -39.28 -133.23 REMARK 500 3 PRO A 75 48.02 -84.46 REMARK 500 3 THR A 76 40.38 -148.10 REMARK 500 3 ASP A 86 32.50 -179.20 REMARK 500 3 MET A 89 -165.01 53.23 REMARK 500 3 THR A 93 -157.68 -80.38 REMARK 500 3 ASN A 103 13.42 57.24 REMARK 500 3 GLN A 110 154.85 -49.99 REMARK 500 3 ARG A 121 -46.45 -149.75 REMARK 500 4 HIS A 7 83.35 172.03 REMARK 500 4 PRO A 8 60.73 -66.16 REMARK 500 4 THR A 17 69.99 -68.55 REMARK 500 4 PHE A 23 93.70 -170.54 REMARK 500 4 TYR A 24 68.55 60.27 REMARK 500 4 SER A 72 -36.01 -134.28 REMARK 500 4 PRO A 75 46.82 -86.94 REMARK 500 4 THR A 85 -133.14 -91.34 REMARK 500 4 ASP A 86 43.30 -88.40 REMARK 500 REMARK 500 THIS ENTRY HAS 336 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 37 0.32 SIDE CHAIN REMARK 500 1 ARG A 67 0.31 SIDE CHAIN REMARK 500 1 ARG A 115 0.32 SIDE CHAIN REMARK 500 1 ARG A 118 0.30 SIDE CHAIN REMARK 500 1 ARG A 119 0.32 SIDE CHAIN REMARK 500 1 ARG A 121 0.31 SIDE CHAIN REMARK 500 1 ARG A 124 0.16 SIDE CHAIN REMARK 500 1 ARG A 131 0.21 SIDE CHAIN REMARK 500 1 ARG A 138 0.28 SIDE CHAIN REMARK 500 2 ARG A 37 0.20 SIDE CHAIN REMARK 500 2 ARG A 67 0.32 SIDE CHAIN REMARK 500 2 ARG A 115 0.23 SIDE CHAIN REMARK 500 2 ARG A 118 0.25 SIDE CHAIN REMARK 500 2 ARG A 119 0.28 SIDE CHAIN REMARK 500 2 ARG A 121 0.12 SIDE CHAIN REMARK 500 2 ARG A 124 0.21 SIDE CHAIN REMARK 500 2 ARG A 131 0.21 SIDE CHAIN REMARK 500 2 ARG A 138 0.21 SIDE CHAIN REMARK 500 3 ARG A 37 0.22 SIDE CHAIN REMARK 500 3 ARG A 67 0.30 SIDE CHAIN REMARK 500 3 ARG A 115 0.28 SIDE CHAIN REMARK 500 3 ARG A 118 0.28 SIDE CHAIN REMARK 500 3 ARG A 119 0.26 SIDE CHAIN REMARK 500 3 ARG A 124 0.29 SIDE CHAIN REMARK 500 3 ARG A 131 0.24 SIDE CHAIN REMARK 500 3 ARG A 138 0.23 SIDE CHAIN REMARK 500 4 ARG A 37 0.27 SIDE CHAIN REMARK 500 4 ARG A 67 0.24 SIDE CHAIN REMARK 500 4 ARG A 115 0.18 SIDE CHAIN REMARK 500 4 ARG A 118 0.22 SIDE CHAIN REMARK 500 4 ARG A 119 0.21 SIDE CHAIN REMARK 500 4 ARG A 121 0.32 SIDE CHAIN REMARK 500 4 ARG A 124 0.22 SIDE CHAIN REMARK 500 4 ARG A 131 0.18 SIDE CHAIN REMARK 500 4 ARG A 138 0.31 SIDE CHAIN REMARK 500 5 ARG A 37 0.18 SIDE CHAIN REMARK 500 5 ARG A 67 0.28 SIDE CHAIN REMARK 500 5 ARG A 115 0.22 SIDE CHAIN REMARK 500 5 ARG A 118 0.23 SIDE CHAIN REMARK 500 5 ARG A 119 0.26 SIDE CHAIN REMARK 500 5 ARG A 121 0.14 SIDE CHAIN REMARK 500 5 ARG A 124 0.20 SIDE CHAIN REMARK 500 5 ARG A 131 0.18 SIDE CHAIN REMARK 500 5 ARG A 138 0.23 SIDE CHAIN REMARK 500 6 ARG A 37 0.31 SIDE CHAIN REMARK 500 6 ARG A 67 0.31 SIDE CHAIN REMARK 500 6 ARG A 115 0.28 SIDE CHAIN REMARK 500 6 ARG A 118 0.31 SIDE CHAIN REMARK 500 6 ARG A 119 0.20 SIDE CHAIN REMARK 500 6 ARG A 121 0.27 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 222 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1JR6 A 1 138 UNP P27958 POLG_HCVH 1353 1507 SEQADV 1JR6 GLY A -3 UNP P27958 CLONING ARTIFACT SEQADV 1JR6 SER A -2 UNP P27958 CLONING ARTIFACT SEQADV 1JR6 HIS A -1 UNP P27958 CLONING ARTIFACT SEQADV 1JR6 MET A 0 UNP P27958 CLONING ARTIFACT SEQADV 1JR6 SER A 105 UNP P27958 SEE REMARK 999 SEQADV 1JR6 ASP A 106 UNP P27958 SEE REMARK 999 SEQADV 1JR6 GLY A 107 UNP P27958 SEE REMARK 999 SEQADV 1JR6 LYS A 108 UNP P27958 SEE REMARK 999 SEQADV 1JR6 A UNP P27958 CYS 1457 DELETION SEQADV 1JR6 A UNP P27958 VAL 1458 DELETION SEQADV 1JR6 A UNP P27958 THR 1459 DELETION SEQADV 1JR6 A UNP P27958 GLN 1460 DELETION SEQADV 1JR6 A UNP P27958 THR 1461 DELETION SEQADV 1JR6 A UNP P27958 VAL 1462 DELETION SEQADV 1JR6 A UNP P27958 ASP 1463 DELETION SEQADV 1JR6 A UNP P27958 PHE 1464 DELETION SEQADV 1JR6 A UNP P27958 SER 1465 DELETION SEQADV 1JR6 A UNP P27958 LEU 1466 DELETION SEQADV 1JR6 A UNP P27958 ASP 1467 DELETION SEQADV 1JR6 A UNP P27958 PRO 1468 DELETION SEQADV 1JR6 A UNP P27958 THR 1469 DELETION SEQADV 1JR6 A UNP P27958 PHE 1470 DELETION SEQADV 1JR6 A UNP P27958 THR 1471 DELETION SEQADV 1JR6 A UNP P27958 ILE 1472 DELETION SEQADV 1JR6 A UNP P27958 GLU 1473 DELETION SEQADV 1JR6 A UNP P27958 THR 1474 DELETION SEQADV 1JR6 A UNP P27958 ILE 1475 DELETION SEQADV 1JR6 A UNP P27958 THR 1476 DELETION SEQADV 1JR6 A UNP P27958 LEU 1477 DELETION SEQRES 1 A 142 GLY SER HIS MET GLY SER VAL THR VAL PRO HIS PRO ASN SEQRES 2 A 142 ILE GLU GLU VAL ALA LEU SER THR THR GLY GLU ILE PRO SEQRES 3 A 142 PHE TYR GLY LYS ALA ILE PRO LEU GLU VAL ILE LYS GLY SEQRES 4 A 142 GLY ARG HIS LEU ILE PHE CYS HIS SER LYS LYS LYS CYS SEQRES 5 A 142 ASP GLU LEU ALA ALA LYS LEU VAL ALA LEU GLY ILE ASN SEQRES 6 A 142 ALA VAL ALA TYR TYR ARG GLY LEU ASP VAL SER VAL ILE SEQRES 7 A 142 PRO THR ASN GLY ASP VAL VAL VAL VAL ALA THR ASP ALA SEQRES 8 A 142 LEU MET THR GLY PHE THR GLY ASP PHE ASP SER VAL ILE SEQRES 9 A 142 ASP CYS ASN THR SER ASP GLY LYS PRO GLN ASP ALA VAL SEQRES 10 A 142 SER ARG THR GLN ARG ARG GLY ARG THR GLY ARG GLY LYS SEQRES 11 A 142 PRO GLY ILE TYR ARG PHE VAL ALA PRO GLY GLU ARG HELIX 1 1 PRO A 29 LYS A 34 1 6 HELIX 2 2 SER A 44 GLY A 59 1 16 HELIX 3 3 ASP A 111 GLY A 120 1 10 SHEET 1 A 6 ILE A 10 ALA A 14 0 SHEET 2 A 6 GLY A 128 PHE A 132 1 O TYR A 130 N VAL A 13 SHEET 3 A 6 SER A 98 ASP A 101 1 N ASP A 101 O ARG A 131 SHEET 4 A 6 HIS A 38 PHE A 41 1 N LEU A 39 O SER A 98 SHEET 5 A 6 VAL A 80 ALA A 84 1 O VAL A 82 N ILE A 40 SHEET 6 A 6 ASN A 61 TYR A 65 1 N ASN A 61 O VAL A 81 SHEET 1 B 2 ILE A 21 PRO A 22 0 SHEET 2 B 2 ALA A 27 ILE A 28 -1 O ILE A 28 N ILE A 21 SHEET 1 C 2 THR A 104 SER A 105 0 SHEET 2 C 2 LYS A 108 PRO A 109 -1 O LYS A 108 N SER A 105 CRYST1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1