data_1JRL # _entry.id 1JRL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1JRL pdb_00001jrl 10.2210/pdb1jrl/pdb RCSB RCSB014108 ? ? WWPDB D_1000014108 ? ? # _pdbx_database_status.entry_id 1JRL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2001-08-14 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lo, Y.-C.' 1 'Lin, S.-C.' 2 'Shaw, J.-F.' 3 'Liaw, Y.-C.' 4 # _citation.id primary _citation.title ;Crystal Structure of Escherichia coli Thioesterase I/Protease I/Lysophospholipase L1: Consensus Sequence Blocks Constitute the Catalytic Center of SGNH-hydrolases through a Conserved Hydrogen Bond Network ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 330 _citation.page_first 539 _citation.page_last 551 _citation.year 2003 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12842470 _citation.pdbx_database_id_DOI '10.1016/S0022-2836(03)00637-5' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lo, Y.-C.' 1 ? primary 'Lin, S.-C.' 2 ? primary 'Shaw, J.-F.' 3 ? primary 'Liaw, Y.-C.' 4 ? # _cell.entry_id 1JRL _cell.length_a 50.011 _cell.length_b 50.011 _cell.length_c 169.718 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1JRL _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 96 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Acyl-CoA Thioesterase I' 21545.371 1 '3.1.2.-, 3.1.1.5' L109P ? ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 non-polymer syn IMIDAZOLE 69.085 1 ? ? ? ? 4 water nat water 18.015 235 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PROTEASE I, LYSOPHOSPHOLIPASE L1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ADTLLILGDSLSAGYRMSASAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGFQ PQQTEQTLRQILQDVKAANAEPLLMQIRPPANYGRRYNEAFSAIYPKLAKEFDVPLLPFFMEEVYLKPQWMQDDGIHPNR DAQPFIADWMAKQLQPLVNHDSLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;ADTLLILGDSLSAGYRMSASAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGFQ PQQTEQTLRQILQDVKAANAEPLLMQIRPPANYGRRYNEAFSAIYPKLAKEFDVPLLPFFMEEVYLKPQWMQDDGIHPNR DAQPFIADWMAKQLQPLVNHDSLEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ASP n 1 3 THR n 1 4 LEU n 1 5 LEU n 1 6 ILE n 1 7 LEU n 1 8 GLY n 1 9 ASP n 1 10 SER n 1 11 LEU n 1 12 SER n 1 13 ALA n 1 14 GLY n 1 15 TYR n 1 16 ARG n 1 17 MET n 1 18 SER n 1 19 ALA n 1 20 SER n 1 21 ALA n 1 22 ALA n 1 23 TRP n 1 24 PRO n 1 25 ALA n 1 26 LEU n 1 27 LEU n 1 28 ASN n 1 29 ASP n 1 30 LYS n 1 31 TRP n 1 32 GLN n 1 33 SER n 1 34 LYS n 1 35 THR n 1 36 SER n 1 37 VAL n 1 38 VAL n 1 39 ASN n 1 40 ALA n 1 41 SER n 1 42 ILE n 1 43 SER n 1 44 GLY n 1 45 ASP n 1 46 THR n 1 47 SER n 1 48 GLN n 1 49 GLN n 1 50 GLY n 1 51 LEU n 1 52 ALA n 1 53 ARG n 1 54 LEU n 1 55 PRO n 1 56 ALA n 1 57 LEU n 1 58 LEU n 1 59 LYS n 1 60 GLN n 1 61 HIS n 1 62 GLN n 1 63 PRO n 1 64 ARG n 1 65 TRP n 1 66 VAL n 1 67 LEU n 1 68 VAL n 1 69 GLU n 1 70 LEU n 1 71 GLY n 1 72 GLY n 1 73 ASN n 1 74 ASP n 1 75 GLY n 1 76 LEU n 1 77 ARG n 1 78 GLY n 1 79 PHE n 1 80 GLN n 1 81 PRO n 1 82 GLN n 1 83 GLN n 1 84 THR n 1 85 GLU n 1 86 GLN n 1 87 THR n 1 88 LEU n 1 89 ARG n 1 90 GLN n 1 91 ILE n 1 92 LEU n 1 93 GLN n 1 94 ASP n 1 95 VAL n 1 96 LYS n 1 97 ALA n 1 98 ALA n 1 99 ASN n 1 100 ALA n 1 101 GLU n 1 102 PRO n 1 103 LEU n 1 104 LEU n 1 105 MET n 1 106 GLN n 1 107 ILE n 1 108 ARG n 1 109 PRO n 1 110 PRO n 1 111 ALA n 1 112 ASN n 1 113 TYR n 1 114 GLY n 1 115 ARG n 1 116 ARG n 1 117 TYR n 1 118 ASN n 1 119 GLU n 1 120 ALA n 1 121 PHE n 1 122 SER n 1 123 ALA n 1 124 ILE n 1 125 TYR n 1 126 PRO n 1 127 LYS n 1 128 LEU n 1 129 ALA n 1 130 LYS n 1 131 GLU n 1 132 PHE n 1 133 ASP n 1 134 VAL n 1 135 PRO n 1 136 LEU n 1 137 LEU n 1 138 PRO n 1 139 PHE n 1 140 PHE n 1 141 MET n 1 142 GLU n 1 143 GLU n 1 144 VAL n 1 145 TYR n 1 146 LEU n 1 147 LYS n 1 148 PRO n 1 149 GLN n 1 150 TRP n 1 151 MET n 1 152 GLN n 1 153 ASP n 1 154 ASP n 1 155 GLY n 1 156 ILE n 1 157 HIS n 1 158 PRO n 1 159 ASN n 1 160 ARG n 1 161 ASP n 1 162 ALA n 1 163 GLN n 1 164 PRO n 1 165 PHE n 1 166 ILE n 1 167 ALA n 1 168 ASP n 1 169 TRP n 1 170 MET n 1 171 ALA n 1 172 LYS n 1 173 GLN n 1 174 LEU n 1 175 GLN n 1 176 PRO n 1 177 LEU n 1 178 VAL n 1 179 ASN n 1 180 HIS n 1 181 ASP n 1 182 SER n 1 183 LEU n 1 184 GLU n 1 185 HIS n 1 186 HIS n 1 187 HIS n 1 188 HIS n 1 189 HIS n 1 190 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene 'tesA, apeA, pldC' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET-20b(+)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TESA_ECOLI _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ADTLLILGDSLSAGYRMSASAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGFQ PQQTEQTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVPLLPFFMEEVYLKPQWMQDDGIHPNR DAQPFIADWMAKQLQPLVNHDS ; _struct_ref.pdbx_align_begin 27 _struct_ref.pdbx_db_accession P29679 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1JRL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 182 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P29679 _struct_ref_seq.db_align_beg 27 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 208 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 182 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1JRL PRO A 109 ? UNP P29679 LEU 135 'engineered mutation' 109 1 1 1JRL LEU A 183 ? UNP P29679 ? ? 'expression tag' 183 2 1 1JRL GLU A 184 ? UNP P29679 ? ? 'expression tag' 184 3 1 1JRL HIS A 185 ? UNP P29679 ? ? 'expression tag' 185 4 1 1JRL HIS A 186 ? UNP P29679 ? ? 'expression tag' 186 5 1 1JRL HIS A 187 ? UNP P29679 ? ? 'expression tag' 187 6 1 1JRL HIS A 188 ? UNP P29679 ? ? 'expression tag' 188 7 1 1JRL HIS A 189 ? UNP P29679 ? ? 'expression tag' 189 8 1 1JRL HIS A 190 ? UNP P29679 ? ? 'expression tag' 190 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IMD non-polymer . IMIDAZOLE ? 'C3 H5 N2 1' 69.085 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1JRL _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 50.02 _exptl_crystal.density_Matthews 2.46 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '2-[N-morpholino]ethanesulfonic acid, PEGMME 5000, Ammonium sulfate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 133 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAC Science DIP-2030' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si 111 Channel' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.12720 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSRRC BEAMLINE BL17B2' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.12720 _diffrn_source.pdbx_synchrotron_site NSRRC _diffrn_source.pdbx_synchrotron_beamline BL17B2 # _reflns.entry_id 1JRL _reflns.d_resolution_high 1.93 _reflns.d_resolution_low 24.62 _reflns.limit_h_max 25 _reflns.limit_h_min 1 _reflns.limit_k_max 18 _reflns.limit_k_min 1 _reflns.limit_l_max 85 _reflns.limit_l_min 0 _reflns.number_all 16486 _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_F_max 1017912.79 _reflns.observed_criterion_F_min 0.630000 _reflns.B_iso_Wilson_estimate 18.3 _reflns.observed_criterion_sigma_I ? _reflns.number_obs 15859 _reflns.percent_possible_obs 96.2 _reflns.pdbx_Rmerge_I_obs 0.042 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 19.3 _reflns.pdbx_redundancy 7.89 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.93 _reflns_shell.d_res_low 1.96 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 95.2 _reflns_shell.Rmerge_I_obs 0.384 _reflns_shell.meanI_over_sigI_obs 5.0 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1JRL _refine.ls_number_reflns_all 16558 _refine.ls_number_reflns_obs 15620 _refine.ls_percent_reflns_obs 94.3 _refine.ls_d_res_high 1.95 _refine.ls_d_res_low 24.62 _refine.B_iso_min 14.70 _refine.B_iso_max 74.64 _refine.B_iso_mean 31.40 _refine.occupancy_min 1.00 _refine.occupancy_max 1.00 _refine.aniso_B[1][1] 4.47 _refine.aniso_B[2][2] 4.47 _refine.aniso_B[3][3] -8.95 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_param_bsol 43.7061 _refine.solvent_model_param_ksol 0.330998 _refine.solvent_model_details 'CNS bulk solvent model used' _refine.ls_R_factor_R_work 0.195 _refine.ls_R_factor_R_free 0.229 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_number_reflns_R_free 1228 _refine.ls_percent_reflns_R_free 7.9 _refine.details ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct MIR _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_isotropic_thermal_model anisotropic _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1JRL _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.pdbx_Luzzati_d_res_high_obs 1.95 _refine_analyze.Luzzati_coordinate_error_obs 0.20 _refine_analyze.Luzzati_sigma_a_obs 0.14 _refine_analyze.Luzzati_coordinate_error_free 0.25 _refine_analyze.Luzzati_sigma_a_free 0.15 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1410 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 235 _refine_hist.number_atoms_total 1655 _refine_hist.d_res_high 1.95 _refine_hist.d_res_low 24.62 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.005 . ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.2 . ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 21.7 . ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 0.87 . ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it 1.46 1.50 ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it 2.27 2.00 ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 2.22 2.00 ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 3.32 2.50 ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.R_factor_all _refine_ls_shell.pdbx_refine_id 1.95 2.07 2683 2420 2213 90.2 0.218 0.245 0.015 207 7.7 6 . . 'X-RAY DIFFRACTION' 2.07 2.23 2690 2481 2288 92.2 0.209 0.232 0.015 193 7.2 6 . . 'X-RAY DIFFRACTION' 2.23 2.46 2703 2548 2361 94.3 0.208 0.256 0.015 187 6.9 6 . . 'X-RAY DIFFRACTION' 2.46 2.81 2746 2625 2438 95.6 0.201 0.25 0.015 187 6.8 6 . . 'X-RAY DIFFRACTION' 2.81 3.54 2787 2690 2474 96.5 0.202 0.254 0.014 216 7.8 6 . . 'X-RAY DIFFRACTION' 3.54 24.62 2954 2856 2618 96.6 0.179 0.199 0.012 238 8.1 6 . . 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' 4 imd.param imd.top 'X-RAY DIFFRACTION' # _struct.entry_id 1JRL _struct.title 'Crystal structure of E. coli Lysophospholiase L1/Acyl-CoA Thioesterase I/Protease I L109P mutant' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1JRL _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'Hydrolase, Protease' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 9 ? GLY A 14 ? ASP A 9 GLY A 14 1 ? 6 HELX_P HELX_P2 2 SER A 18 ? ALA A 21 ? SER A 18 ALA A 21 5 ? 4 HELX_P HELX_P3 3 ALA A 22 ? TRP A 31 ? ALA A 22 TRP A 31 1 ? 10 HELX_P HELX_P4 4 THR A 46 ? GLN A 62 ? THR A 46 GLN A 62 1 ? 17 HELX_P HELX_P5 5 GLN A 80 ? ALA A 98 ? GLN A 80 ALA A 98 1 ? 19 HELX_P HELX_P6 6 PRO A 110 ? TYR A 113 ? PRO A 110 TYR A 113 5 ? 4 HELX_P HELX_P7 7 GLY A 114 ? PHE A 132 ? GLY A 114 PHE A 132 1 ? 19 HELX_P HELX_P8 8 PHE A 140 ? LEU A 146 ? PHE A 140 LEU A 146 1 ? 7 HELX_P HELX_P9 9 LYS A 147 ? MET A 151 ? LYS A 147 MET A 151 5 ? 5 HELX_P HELX_P10 10 ASN A 159 ? ASP A 161 ? ASN A 159 ASP A 161 5 ? 3 HELX_P HELX_P11 11 ALA A 162 ? GLN A 175 ? ALA A 162 GLN A 175 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 35 ? ASN A 39 ? THR A 35 ASN A 39 A 2 ASP A 2 ? GLY A 8 ? ASP A 2 GLY A 8 A 3 TRP A 65 ? GLU A 69 ? TRP A 65 GLU A 69 A 4 GLU A 101 ? MET A 105 ? GLU A 101 MET A 105 A 5 LEU A 136 ? LEU A 137 ? LEU A 136 LEU A 137 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O SER A 36 ? O SER A 36 N LEU A 4 ? N LEU A 4 A 2 3 N LEU A 7 ? N LEU A 7 O LEU A 67 ? O LEU A 67 A 3 4 N VAL A 66 ? N VAL A 66 O LEU A 103 ? O LEU A 103 A 4 5 N LEU A 104 ? N LEU A 104 O LEU A 137 ? O LEU A 137 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 501 ? 9 'BINDING SITE FOR RESIDUE SO4 A 501' AC2 Software A IMD 601 ? 4 'BINDING SITE FOR RESIDUE IMD A 601' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 MET A 17 ? MET A 17 . ? 1_555 ? 2 AC1 9 SER A 18 ? SER A 18 . ? 1_555 ? 3 AC1 9 ALA A 21 ? ALA A 21 . ? 1_555 ? 4 AC1 9 ILE A 42 ? ILE A 42 . ? 8_665 ? 5 AC1 9 ARG A 53 ? ARG A 53 . ? 8_665 ? 6 AC1 9 LEU A 57 ? LEU A 57 . ? 8_665 ? 7 AC1 9 ARG A 160 ? ARG A 160 . ? 1_555 ? 8 AC1 9 HOH D . ? HOH A 1029 . ? 1_555 ? 9 AC1 9 HOH D . ? HOH A 1047 . ? 1_555 ? 10 AC2 4 LYS A 34 ? LYS A 34 . ? 1_555 ? 11 AC2 4 THR A 35 ? THR A 35 . ? 1_555 ? 12 AC2 4 VAL A 178 ? VAL A 178 . ? 1_555 ? 13 AC2 4 HOH D . ? HOH A 1166 . ? 1_555 ? # _atom_sites.entry_id 1JRL _atom_sites.fract_transf_matrix[1][1] 0.019996 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019996 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005892 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 ASP 2 2 2 ASP ASP A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 TYR 15 15 15 TYR TYR A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 MET 17 17 17 MET MET A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 TRP 23 23 23 TRP TRP A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 ASN 28 28 28 ASN ASN A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 TRP 31 31 31 TRP TRP A . n A 1 32 GLN 32 32 ? ? ? A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 ASN 39 39 39 ASN ASN A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 GLN 48 48 48 GLN GLN A . n A 1 49 GLN 49 49 49 GLN GLN A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 ARG 53 53 53 ARG ARG A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 PRO 55 55 55 PRO PRO A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 GLN 60 60 60 GLN GLN A . n A 1 61 HIS 61 61 61 HIS HIS A . n A 1 62 GLN 62 62 62 GLN GLN A . n A 1 63 PRO 63 63 63 PRO PRO A . n A 1 64 ARG 64 64 64 ARG ARG A . n A 1 65 TRP 65 65 65 TRP TRP A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 PHE 79 79 79 PHE PHE A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 GLN 82 82 82 GLN GLN A . n A 1 83 GLN 83 83 83 GLN GLN A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 GLN 86 86 86 GLN GLN A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 GLN 90 90 90 GLN GLN A . n A 1 91 ILE 91 91 91 ILE ILE A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 GLN 93 93 93 GLN GLN A . n A 1 94 ASP 94 94 94 ASP ASP A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 ALA 98 98 98 ALA ALA A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 ALA 100 100 100 ALA ALA A . n A 1 101 GLU 101 101 101 GLU GLU A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 MET 105 105 105 MET MET A . n A 1 106 GLN 106 106 106 GLN GLN A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 ARG 108 108 108 ARG ARG A . n A 1 109 PRO 109 109 109 PRO PRO A . n A 1 110 PRO 110 110 110 PRO PRO A . n A 1 111 ALA 111 111 111 ALA ALA A . n A 1 112 ASN 112 112 112 ASN ASN A . n A 1 113 TYR 113 113 113 TYR TYR A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 ARG 115 115 115 ARG ARG A . n A 1 116 ARG 116 116 116 ARG ARG A . n A 1 117 TYR 117 117 117 TYR TYR A . n A 1 118 ASN 118 118 118 ASN ASN A . n A 1 119 GLU 119 119 119 GLU GLU A . n A 1 120 ALA 120 120 120 ALA ALA A . n A 1 121 PHE 121 121 121 PHE PHE A . n A 1 122 SER 122 122 122 SER SER A . n A 1 123 ALA 123 123 123 ALA ALA A . n A 1 124 ILE 124 124 124 ILE ILE A . n A 1 125 TYR 125 125 125 TYR TYR A . n A 1 126 PRO 126 126 126 PRO PRO A . n A 1 127 LYS 127 127 127 LYS LYS A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 LYS 130 130 130 LYS LYS A . n A 1 131 GLU 131 131 131 GLU GLU A . n A 1 132 PHE 132 132 132 PHE PHE A . n A 1 133 ASP 133 133 133 ASP ASP A . n A 1 134 VAL 134 134 134 VAL VAL A . n A 1 135 PRO 135 135 135 PRO PRO A . n A 1 136 LEU 136 136 136 LEU LEU A . n A 1 137 LEU 137 137 137 LEU LEU A . n A 1 138 PRO 138 138 138 PRO PRO A . n A 1 139 PHE 139 139 139 PHE PHE A . n A 1 140 PHE 140 140 140 PHE PHE A . n A 1 141 MET 141 141 141 MET MET A . n A 1 142 GLU 142 142 142 GLU GLU A . n A 1 143 GLU 143 143 143 GLU GLU A . n A 1 144 VAL 144 144 144 VAL VAL A . n A 1 145 TYR 145 145 145 TYR TYR A . n A 1 146 LEU 146 146 146 LEU LEU A . n A 1 147 LYS 147 147 147 LYS LYS A . n A 1 148 PRO 148 148 148 PRO PRO A . n A 1 149 GLN 149 149 149 GLN GLN A . n A 1 150 TRP 150 150 150 TRP TRP A . n A 1 151 MET 151 151 151 MET MET A . n A 1 152 GLN 152 152 152 GLN GLN A . n A 1 153 ASP 153 153 153 ASP ASP A . n A 1 154 ASP 154 154 154 ASP ASP A . n A 1 155 GLY 155 155 155 GLY GLY A . n A 1 156 ILE 156 156 156 ILE ILE A . n A 1 157 HIS 157 157 157 HIS HIS A . n A 1 158 PRO 158 158 158 PRO PRO A . n A 1 159 ASN 159 159 159 ASN ASN A . n A 1 160 ARG 160 160 160 ARG ARG A . n A 1 161 ASP 161 161 161 ASP ASP A . n A 1 162 ALA 162 162 162 ALA ALA A . n A 1 163 GLN 163 163 163 GLN GLN A . n A 1 164 PRO 164 164 164 PRO PRO A . n A 1 165 PHE 165 165 165 PHE PHE A . n A 1 166 ILE 166 166 166 ILE ILE A . n A 1 167 ALA 167 167 167 ALA ALA A . n A 1 168 ASP 168 168 168 ASP ASP A . n A 1 169 TRP 169 169 169 TRP TRP A . n A 1 170 MET 170 170 170 MET MET A . n A 1 171 ALA 171 171 171 ALA ALA A . n A 1 172 LYS 172 172 172 LYS LYS A . n A 1 173 GLN 173 173 173 GLN GLN A . n A 1 174 LEU 174 174 174 LEU LEU A . n A 1 175 GLN 175 175 175 GLN GLN A . n A 1 176 PRO 176 176 176 PRO PRO A . n A 1 177 LEU 177 177 177 LEU LEU A . n A 1 178 VAL 178 178 178 VAL VAL A . n A 1 179 ASN 179 179 179 ASN ASN A . n A 1 180 HIS 180 180 ? ? ? A . n A 1 181 ASP 181 181 ? ? ? A . n A 1 182 SER 182 182 ? ? ? A . n A 1 183 LEU 183 183 ? ? ? A . n A 1 184 GLU 184 184 ? ? ? A . n A 1 185 HIS 185 185 ? ? ? A . n A 1 186 HIS 186 186 ? ? ? A . n A 1 187 HIS 187 187 ? ? ? A . n A 1 188 HIS 188 188 ? ? ? A . n A 1 189 HIS 189 189 ? ? ? A . n A 1 190 HIS 190 190 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 501 501 SO4 SO4 A . C 3 IMD 1 601 601 IMD IMD A . D 4 HOH 1 1001 1001 HOH TIP A . D 4 HOH 2 1002 1002 HOH TIP A . D 4 HOH 3 1003 1003 HOH TIP A . D 4 HOH 4 1004 1004 HOH TIP A . D 4 HOH 5 1005 1005 HOH TIP A . D 4 HOH 6 1006 1006 HOH TIP A . D 4 HOH 7 1007 1007 HOH TIP A . D 4 HOH 8 1008 1008 HOH TIP A . D 4 HOH 9 1009 1009 HOH TIP A . D 4 HOH 10 1010 1010 HOH TIP A . D 4 HOH 11 1011 1011 HOH TIP A . D 4 HOH 12 1012 1012 HOH TIP A . D 4 HOH 13 1013 1013 HOH TIP A . D 4 HOH 14 1014 1014 HOH TIP A . D 4 HOH 15 1015 1015 HOH TIP A . D 4 HOH 16 1016 1016 HOH TIP A . D 4 HOH 17 1017 1017 HOH TIP A . D 4 HOH 18 1018 1018 HOH TIP A . D 4 HOH 19 1019 1019 HOH TIP A . D 4 HOH 20 1020 1020 HOH TIP A . D 4 HOH 21 1021 1021 HOH TIP A . D 4 HOH 22 1022 1022 HOH TIP A . D 4 HOH 23 1023 1023 HOH TIP A . D 4 HOH 24 1024 1024 HOH TIP A . D 4 HOH 25 1025 1025 HOH TIP A . D 4 HOH 26 1026 1026 HOH TIP A . D 4 HOH 27 1027 1027 HOH TIP A . D 4 HOH 28 1028 1028 HOH TIP A . D 4 HOH 29 1029 1029 HOH TIP A . D 4 HOH 30 1030 1030 HOH TIP A . D 4 HOH 31 1031 1031 HOH TIP A . D 4 HOH 32 1032 1032 HOH TIP A . D 4 HOH 33 1033 1033 HOH TIP A . D 4 HOH 34 1034 1034 HOH TIP A . D 4 HOH 35 1035 1035 HOH TIP A . D 4 HOH 36 1036 1036 HOH TIP A . D 4 HOH 37 1037 1037 HOH TIP A . D 4 HOH 38 1038 1038 HOH TIP A . D 4 HOH 39 1039 1039 HOH TIP A . D 4 HOH 40 1040 1040 HOH TIP A . D 4 HOH 41 1041 1041 HOH TIP A . D 4 HOH 42 1042 1042 HOH TIP A . D 4 HOH 43 1043 1043 HOH TIP A . D 4 HOH 44 1044 1044 HOH TIP A . D 4 HOH 45 1045 1045 HOH TIP A . D 4 HOH 46 1046 1046 HOH TIP A . D 4 HOH 47 1047 1047 HOH TIP A . D 4 HOH 48 1048 1048 HOH TIP A . D 4 HOH 49 1049 1049 HOH TIP A . D 4 HOH 50 1050 1050 HOH TIP A . D 4 HOH 51 1051 1051 HOH TIP A . D 4 HOH 52 1052 1052 HOH TIP A . D 4 HOH 53 1053 1053 HOH TIP A . D 4 HOH 54 1054 1054 HOH TIP A . D 4 HOH 55 1055 1055 HOH TIP A . D 4 HOH 56 1056 1056 HOH TIP A . D 4 HOH 57 1057 1057 HOH TIP A . D 4 HOH 58 1058 1058 HOH TIP A . D 4 HOH 59 1059 1059 HOH TIP A . D 4 HOH 60 1060 1060 HOH TIP A . D 4 HOH 61 1061 1061 HOH TIP A . D 4 HOH 62 1062 1062 HOH TIP A . D 4 HOH 63 1063 1063 HOH TIP A . D 4 HOH 64 1064 1064 HOH TIP A . D 4 HOH 65 1065 1065 HOH TIP A . D 4 HOH 66 1066 1066 HOH TIP A . D 4 HOH 67 1067 1067 HOH TIP A . D 4 HOH 68 1068 1068 HOH TIP A . D 4 HOH 69 1069 1069 HOH TIP A . D 4 HOH 70 1070 1070 HOH TIP A . D 4 HOH 71 1071 1071 HOH TIP A . D 4 HOH 72 1072 1072 HOH TIP A . D 4 HOH 73 1073 1073 HOH TIP A . D 4 HOH 74 1074 1074 HOH TIP A . D 4 HOH 75 1075 1075 HOH TIP A . D 4 HOH 76 1076 1076 HOH TIP A . D 4 HOH 77 1077 1077 HOH TIP A . D 4 HOH 78 1078 1078 HOH TIP A . D 4 HOH 79 1079 1079 HOH TIP A . D 4 HOH 80 1080 1080 HOH TIP A . D 4 HOH 81 1081 1081 HOH TIP A . D 4 HOH 82 1082 1082 HOH TIP A . D 4 HOH 83 1083 1083 HOH TIP A . D 4 HOH 84 1084 1084 HOH TIP A . D 4 HOH 85 1085 1085 HOH TIP A . D 4 HOH 86 1086 1086 HOH TIP A . D 4 HOH 87 1087 1087 HOH TIP A . D 4 HOH 88 1088 1088 HOH TIP A . D 4 HOH 89 1089 1089 HOH TIP A . D 4 HOH 90 1090 1090 HOH TIP A . D 4 HOH 91 1091 1091 HOH TIP A . D 4 HOH 92 1092 1092 HOH TIP A . D 4 HOH 93 1093 1093 HOH TIP A . D 4 HOH 94 1094 1094 HOH TIP A . D 4 HOH 95 1095 1095 HOH TIP A . D 4 HOH 96 1096 1096 HOH TIP A . D 4 HOH 97 1097 1097 HOH TIP A . D 4 HOH 98 1098 1098 HOH TIP A . D 4 HOH 99 1099 1099 HOH TIP A . D 4 HOH 100 1100 1100 HOH TIP A . D 4 HOH 101 1101 1101 HOH TIP A . D 4 HOH 102 1102 1102 HOH TIP A . D 4 HOH 103 1103 1103 HOH TIP A . D 4 HOH 104 1104 1104 HOH TIP A . D 4 HOH 105 1105 1105 HOH TIP A . D 4 HOH 106 1106 1106 HOH TIP A . D 4 HOH 107 1107 1107 HOH TIP A . D 4 HOH 108 1108 1108 HOH TIP A . D 4 HOH 109 1109 1109 HOH TIP A . D 4 HOH 110 1110 1110 HOH TIP A . D 4 HOH 111 1111 1111 HOH TIP A . D 4 HOH 112 1112 1112 HOH TIP A . D 4 HOH 113 1113 1113 HOH TIP A . D 4 HOH 114 1114 1114 HOH TIP A . D 4 HOH 115 1115 1115 HOH TIP A . D 4 HOH 116 1116 1116 HOH TIP A . D 4 HOH 117 1117 1117 HOH TIP A . D 4 HOH 118 1118 1118 HOH TIP A . D 4 HOH 119 1119 1119 HOH TIP A . D 4 HOH 120 1120 1120 HOH TIP A . D 4 HOH 121 1121 1121 HOH TIP A . D 4 HOH 122 1122 1122 HOH TIP A . D 4 HOH 123 1123 1123 HOH TIP A . D 4 HOH 124 1124 1124 HOH TIP A . D 4 HOH 125 1125 1125 HOH TIP A . D 4 HOH 126 1126 1126 HOH TIP A . D 4 HOH 127 1127 1127 HOH TIP A . D 4 HOH 128 1128 1128 HOH TIP A . D 4 HOH 129 1129 1129 HOH TIP A . D 4 HOH 130 1130 1130 HOH TIP A . D 4 HOH 131 1131 1131 HOH TIP A . D 4 HOH 132 1132 1132 HOH TIP A . D 4 HOH 133 1133 1133 HOH TIP A . D 4 HOH 134 1134 1134 HOH TIP A . D 4 HOH 135 1135 1135 HOH TIP A . D 4 HOH 136 1136 1136 HOH TIP A . D 4 HOH 137 1137 1137 HOH TIP A . D 4 HOH 138 1138 1138 HOH TIP A . D 4 HOH 139 1139 1139 HOH TIP A . D 4 HOH 140 1140 1140 HOH TIP A . D 4 HOH 141 1141 1141 HOH TIP A . D 4 HOH 142 1142 1142 HOH TIP A . D 4 HOH 143 1143 1143 HOH TIP A . D 4 HOH 144 1144 1144 HOH TIP A . D 4 HOH 145 1145 1145 HOH TIP A . D 4 HOH 146 1146 1146 HOH TIP A . D 4 HOH 147 1147 1147 HOH TIP A . D 4 HOH 148 1148 1148 HOH TIP A . D 4 HOH 149 1149 1149 HOH TIP A . D 4 HOH 150 1150 1150 HOH TIP A . D 4 HOH 151 1151 1151 HOH TIP A . D 4 HOH 152 1152 1152 HOH TIP A . D 4 HOH 153 1153 1153 HOH TIP A . D 4 HOH 154 1154 1154 HOH TIP A . D 4 HOH 155 1155 1155 HOH TIP A . D 4 HOH 156 1156 1156 HOH TIP A . D 4 HOH 157 1157 1157 HOH TIP A . D 4 HOH 158 1158 1158 HOH TIP A . D 4 HOH 159 1159 1159 HOH TIP A . D 4 HOH 160 1160 1160 HOH TIP A . D 4 HOH 161 1161 1161 HOH TIP A . D 4 HOH 162 1162 1162 HOH TIP A . D 4 HOH 163 1163 1163 HOH TIP A . D 4 HOH 164 1164 1164 HOH TIP A . D 4 HOH 165 1165 1165 HOH TIP A . D 4 HOH 166 1166 1166 HOH TIP A . D 4 HOH 167 1167 1167 HOH TIP A . D 4 HOH 168 1168 1168 HOH TIP A . D 4 HOH 169 1169 1169 HOH TIP A . D 4 HOH 170 1170 1170 HOH TIP A . D 4 HOH 171 1171 1171 HOH TIP A . D 4 HOH 172 1172 1172 HOH TIP A . D 4 HOH 173 1173 1173 HOH TIP A . D 4 HOH 174 1174 1174 HOH TIP A . D 4 HOH 175 1175 1175 HOH TIP A . D 4 HOH 176 1176 1176 HOH TIP A . D 4 HOH 177 1177 1177 HOH TIP A . D 4 HOH 178 1178 1178 HOH TIP A . D 4 HOH 179 1179 1179 HOH TIP A . D 4 HOH 180 1180 1180 HOH TIP A . D 4 HOH 181 1181 1181 HOH TIP A . D 4 HOH 182 1182 1182 HOH TIP A . D 4 HOH 183 1183 1183 HOH TIP A . D 4 HOH 184 1184 1184 HOH TIP A . D 4 HOH 185 1185 1185 HOH TIP A . D 4 HOH 186 1186 1186 HOH TIP A . D 4 HOH 187 1187 1187 HOH TIP A . D 4 HOH 188 1188 1188 HOH TIP A . D 4 HOH 189 1189 1189 HOH TIP A . D 4 HOH 190 1190 1190 HOH TIP A . D 4 HOH 191 1191 1191 HOH TIP A . D 4 HOH 192 1192 1192 HOH TIP A . D 4 HOH 193 1193 1193 HOH TIP A . D 4 HOH 194 1194 1194 HOH TIP A . D 4 HOH 195 1195 1195 HOH TIP A . D 4 HOH 196 1196 1196 HOH TIP A . D 4 HOH 197 1197 1197 HOH TIP A . D 4 HOH 198 1198 1198 HOH TIP A . D 4 HOH 199 1199 1199 HOH TIP A . D 4 HOH 200 1200 1200 HOH TIP A . D 4 HOH 201 1201 1201 HOH TIP A . D 4 HOH 202 1202 1202 HOH TIP A . D 4 HOH 203 1203 1203 HOH TIP A . D 4 HOH 204 1204 1204 HOH TIP A . D 4 HOH 205 1205 1205 HOH TIP A . D 4 HOH 206 1206 1206 HOH TIP A . D 4 HOH 207 1207 1207 HOH TIP A . D 4 HOH 208 1208 1208 HOH TIP A . D 4 HOH 209 1209 1209 HOH TIP A . D 4 HOH 210 1210 1210 HOH TIP A . D 4 HOH 211 1211 1211 HOH TIP A . D 4 HOH 212 1212 1212 HOH TIP A . D 4 HOH 213 1213 1213 HOH TIP A . D 4 HOH 214 1214 1214 HOH TIP A . D 4 HOH 215 1215 1215 HOH TIP A . D 4 HOH 216 1216 1216 HOH TIP A . D 4 HOH 217 1217 1217 HOH TIP A . D 4 HOH 218 1218 1218 HOH TIP A . D 4 HOH 219 1219 1219 HOH TIP A . D 4 HOH 220 1220 1220 HOH TIP A . D 4 HOH 221 1221 1221 HOH TIP A . D 4 HOH 222 1222 1222 HOH TIP A . D 4 HOH 223 1223 1223 HOH TIP A . D 4 HOH 224 1224 1224 HOH TIP A . D 4 HOH 225 1225 1225 HOH TIP A . D 4 HOH 226 1226 1226 HOH TIP A . D 4 HOH 227 1227 1227 HOH TIP A . D 4 HOH 228 1228 1228 HOH TIP A . D 4 HOH 229 1229 1229 HOH TIP A . D 4 HOH 230 1230 1230 HOH TIP A . D 4 HOH 231 1231 1231 HOH TIP A . D 4 HOH 232 1232 1232 HOH TIP A . D 4 HOH 233 1233 1233 HOH TIP A . D 4 HOH 234 1234 1234 HOH TIP A . D 4 HOH 235 1235 1235 HOH TIP A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 2 1,2 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 1870 ? 2 MORE -39.4 ? 2 'SSA (A^2)' 16890 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 50.0110000000 -1.0000000000 0.0000000000 0.0000000000 50.0110000000 0.0000000000 0.0000000000 -1.0000000000 84.8590000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-07-08 2 'Structure model' 1 1 2008-04-25 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_ref_seq_dif 3 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _refine_B_iso.class _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id _refine_B_iso.details polymer isotropic 'X-RAY DIFFRACTION' ? water isotropic 'X-RAY DIFFRACTION' ? nonpolymer isotropic 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.location _software.classification _software.language _software.citation_id _software.pdbx_ordinal CNS 1.0 1998 package 'Axel T. Brunger' axel.brunger@@yale.edu . refinement Fortran ? 1 XPRESS . ? ? ? ? ? 'data reduction' ? ? 2 DIP2000 . ? ? ? ? ? 'data reduction' ? ? 3 SCALEPACK . ? ? ? ? ? 'data scaling' ? ? 4 SHARP . ? ? ? ? ? phasing ? ? 5 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 9 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -111.72 _pdbx_validate_torsion.psi -147.80 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLN 32 ? A GLN 32 2 1 Y 1 A HIS 180 ? A HIS 180 3 1 Y 1 A ASP 181 ? A ASP 181 4 1 Y 1 A SER 182 ? A SER 182 5 1 Y 1 A LEU 183 ? A LEU 183 6 1 Y 1 A GLU 184 ? A GLU 184 7 1 Y 1 A HIS 185 ? A HIS 185 8 1 Y 1 A HIS 186 ? A HIS 186 9 1 Y 1 A HIS 187 ? A HIS 187 10 1 Y 1 A HIS 188 ? A HIS 188 11 1 Y 1 A HIS 189 ? A HIS 189 12 1 Y 1 A HIS 190 ? A HIS 190 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 IMIDAZOLE IMD 4 water HOH #