HEADER COMPLEX (PROTEIN KINASE/CYCLIN) 03-JUL-96 1JST TITLE PHOSPHORYLATED CYCLIN-DEPENDENT KINASE-2 BOUND TO CYCLIN A COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIN-DEPENDENT KINASE-2; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: CDK2; COMPND 5 EC: 2.7.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: PHOSPHORYLATED; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CYCLIN A; COMPND 10 CHAIN: B, D; COMPND 11 FRAGMENT: RESIDUES 173-432; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: SF9; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: BACULOVIRUS VECTOR; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET3A; SOURCE 13 OTHER_DETAILS: CYCLIN A-BOUND FORM PHOSPHORYLATED ON THR 160 IN SOURCE 14 VITRO USING A CDK-ACTIVATING KINASE CONSISTING OF THE CYCLINH-CDK7 SOURCE 15 COMPLEX; SOURCE 16 MOL_ID: 2; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606; SOURCE 20 CELL_LINE: SF9; SOURCE 21 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 23 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 24 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 25 EXPRESSION_SYSTEM_PLASMID: PET3A; SOURCE 26 OTHER_DETAILS: THE FRAGMENT USED IN THE CRYSTALLIZATION (RESIDUES SOURCE 27 173-432) WAS PRODUCED BY THE CLEAVAGE OF FULL-LENGTH CYCLIN A BY SOURCE 28 SUBTILISIN KEYWDS COMPLEX (PROTEIN KINASE-CYCLIN), CYCLIN, CDK, PHOSPHORYLATION, KEYWDS 2 COMPLEX (PROTEIN KINASE-CYCLIN) COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.A.RUSSO,P.D.JEFFREY,N.P.PAVLETICH REVDAT 5 20-NOV-24 1JST 1 REMARK REVDAT 4 05-JUN-24 1JST 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1JST 1 VERSN REVDAT 2 24-FEB-09 1JST 1 VERSN REVDAT 1 11-JAN-97 1JST 0 JRNL AUTH A.A.RUSSO,P.D.JEFFREY,N.P.PAVLETICH JRNL TITL STRUCTURAL BASIS OF CYCLIN-DEPENDENT KINASE ACTIVATION BY JRNL TITL 2 PHOSPHORYLATION. JRNL REF NAT.STRUCT.BIOL. V. 3 696 1996 JRNL REFN ISSN 1072-8368 JRNL PMID 8756328 JRNL DOI 10.1038/NSB0896-696 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 39189 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8972 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 98 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.013 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 1.740 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; 2.700 ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JST COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000174368. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-DEC-95 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 69.80000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.10000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 74.55000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.10000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 69.80000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 74.55000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 204 C - N - CA ANGL. DEV. = 16.8 DEGREES REMARK 500 PRO B 204 C - N - CD ANGL. DEV. = -13.2 DEGREES REMARK 500 ASP B 345 N - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 LEU C 76 CA - CB - CG ANGL. DEV. = 20.0 DEGREES REMARK 500 PRO D 176 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 8 176.61 166.40 REMARK 500 ILE A 10 -119.09 -97.20 REMARK 500 THR A 14 -86.75 43.27 REMARK 500 LEU A 37 -145.69 75.47 REMARK 500 ASP A 38 51.80 -156.54 REMARK 500 THR A 39 -51.28 -24.82 REMARK 500 THR A 41 -144.82 -159.98 REMARK 500 LEU A 96 -76.86 67.26 REMARK 500 THR A 97 -72.87 -12.70 REMARK 500 ARG A 122 52.51 31.98 REMARK 500 ASP A 127 40.64 -150.79 REMARK 500 ASP A 145 78.76 48.93 REMARK 500 PHE A 146 30.29 -92.24 REMARK 500 GLU A 162 90.01 47.63 REMARK 500 VAL A 164 135.16 80.72 REMARK 500 SER A 181 -153.79 -161.05 REMARK 500 PRO A 228 105.18 -45.32 REMARK 500 ASP B 177 -16.14 -42.73 REMARK 500 VAL B 197 -9.35 -53.11 REMARK 500 THR B 282 56.74 -92.27 REMARK 500 ASP B 283 97.01 -23.16 REMARK 500 ASP B 284 -14.41 66.93 REMARK 500 VAL C 7 -81.55 -90.04 REMARK 500 GLU C 8 -168.34 -111.12 REMARK 500 ILE C 10 -130.62 -135.85 REMARK 500 THR C 14 -83.28 65.85 REMARK 500 VAL C 18 93.29 11.59 REMARK 500 ASP C 38 77.45 -103.17 REMARK 500 THR C 41 -90.86 -128.69 REMARK 500 LEU C 96 -26.15 98.47 REMARK 500 ASP C 127 41.80 -150.65 REMARK 500 ASP C 145 86.29 53.92 REMARK 500 ARG C 157 -155.24 -93.90 REMARK 500 GLU C 162 96.06 16.17 REMARK 500 VAL C 163 -163.70 -111.31 REMARK 500 VAL C 164 148.27 66.67 REMARK 500 LEU C 166 -64.21 -26.21 REMARK 500 PRO C 204 58.40 -67.45 REMARK 500 SER C 207 168.69 179.25 REMARK 500 PRO C 228 104.52 -53.54 REMARK 500 VAL C 251 -72.08 -55.25 REMARK 500 ILE C 275 156.57 -42.38 REMARK 500 HIS C 283 134.82 -21.35 REMARK 500 GLN C 287 -28.92 -28.88 REMARK 500 THR C 290 -139.29 -128.92 REMARK 500 LYS C 291 68.65 -160.44 REMARK 500 PRO D 176 -24.79 -25.31 REMARK 500 ASP D 177 -67.76 -120.76 REMARK 500 ARG D 250 -36.05 -38.27 REMARK 500 ASP D 283 66.39 39.84 REMARK 500 REMARK 500 THIS ENTRY HAS 54 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR D 347 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 299 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 132 OD1 REMARK 620 2 ATP A 300 O2A 109.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 299 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN C 132 OD1 REMARK 620 2 ATP C 300 O2G 122.0 REMARK 620 3 ATP C 300 O5' 105.3 89.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP C 300 DBREF 1JST A 1 298 UNP P24941 CDK2_HUMAN 1 298 DBREF 1JST B 175 432 UNP P20248 CCNA2_HUMAN 175 432 DBREF 1JST C 1 298 UNP P24941 CDK2_HUMAN 1 298 DBREF 1JST D 175 432 UNP P20248 CCNA2_HUMAN 175 432 SEQADV 1JST TPO A 160 UNP P24941 THR 160 MODIFIED RESIDUE SEQADV 1JST TPO C 160 UNP P24941 THR 160 MODIFIED RESIDUE SEQRES 1 A 298 MET GLU ASN PHE GLN LYS VAL GLU LYS ILE GLY GLU GLY SEQRES 2 A 298 THR TYR GLY VAL VAL TYR LYS ALA ARG ASN LYS LEU THR SEQRES 3 A 298 GLY GLU VAL VAL ALA LEU LYS LYS ILE ARG LEU ASP THR SEQRES 4 A 298 GLU THR GLU GLY VAL PRO SER THR ALA ILE ARG GLU ILE SEQRES 5 A 298 SER LEU LEU LYS GLU LEU ASN HIS PRO ASN ILE VAL LYS SEQRES 6 A 298 LEU LEU ASP VAL ILE HIS THR GLU ASN LYS LEU TYR LEU SEQRES 7 A 298 VAL PHE GLU PHE LEU HIS GLN ASP LEU LYS LYS PHE MET SEQRES 8 A 298 ASP ALA SER ALA LEU THR GLY ILE PRO LEU PRO LEU ILE SEQRES 9 A 298 LYS SER TYR LEU PHE GLN LEU LEU GLN GLY LEU ALA PHE SEQRES 10 A 298 CYS HIS SER HIS ARG VAL LEU HIS ARG ASP LEU LYS PRO SEQRES 11 A 298 GLN ASN LEU LEU ILE ASN THR GLU GLY ALA ILE LYS LEU SEQRES 12 A 298 ALA ASP PHE GLY LEU ALA ARG ALA PHE GLY VAL PRO VAL SEQRES 13 A 298 ARG THR TYR TPO HIS GLU VAL VAL THR LEU TRP TYR ARG SEQRES 14 A 298 ALA PRO GLU ILE LEU LEU GLY CYS LYS TYR TYR SER THR SEQRES 15 A 298 ALA VAL ASP ILE TRP SER LEU GLY CYS ILE PHE ALA GLU SEQRES 16 A 298 MET VAL THR ARG ARG ALA LEU PHE PRO GLY ASP SER GLU SEQRES 17 A 298 ILE ASP GLN LEU PHE ARG ILE PHE ARG THR LEU GLY THR SEQRES 18 A 298 PRO ASP GLU VAL VAL TRP PRO GLY VAL THR SER MET PRO SEQRES 19 A 298 ASP TYR LYS PRO SER PHE PRO LYS TRP ALA ARG GLN ASP SEQRES 20 A 298 PHE SER LYS VAL VAL PRO PRO LEU ASP GLU ASP GLY ARG SEQRES 21 A 298 SER LEU LEU SER GLN MET LEU HIS TYR ASP PRO ASN LYS SEQRES 22 A 298 ARG ILE SER ALA LYS ALA ALA LEU ALA HIS PRO PHE PHE SEQRES 23 A 298 GLN ASP VAL THR LYS PRO VAL PRO HIS LEU ARG LEU SEQRES 1 B 258 VAL PRO ASP TYR HIS GLU ASP ILE HIS THR TYR LEU ARG SEQRES 2 B 258 GLU MET GLU VAL LYS CYS LYS PRO LYS VAL GLY TYR MET SEQRES 3 B 258 LYS LYS GLN PRO ASP ILE THR ASN SER MET ARG ALA ILE SEQRES 4 B 258 LEU VAL ASP TRP LEU VAL GLU VAL GLY GLU GLU TYR LYS SEQRES 5 B 258 LEU GLN ASN GLU THR LEU HIS LEU ALA VAL ASN TYR ILE SEQRES 6 B 258 ASP ARG PHE LEU SER SER MET SER VAL LEU ARG GLY LYS SEQRES 7 B 258 LEU GLN LEU VAL GLY THR ALA ALA MET LEU LEU ALA SER SEQRES 8 B 258 LYS PHE GLU GLU ILE TYR PRO PRO GLU VAL ALA GLU PHE SEQRES 9 B 258 VAL TYR ILE THR ASP ASP THR TYR THR LYS LYS GLN VAL SEQRES 10 B 258 LEU ARG MET GLU HIS LEU VAL LEU LYS VAL LEU THR PHE SEQRES 11 B 258 ASP LEU ALA ALA PRO THR VAL ASN GLN PHE LEU THR GLN SEQRES 12 B 258 TYR PHE LEU HIS GLN GLN PRO ALA ASN CYS LYS VAL GLU SEQRES 13 B 258 SER LEU ALA MET PHE LEU GLY GLU LEU SER LEU ILE ASP SEQRES 14 B 258 ALA ASP PRO TYR LEU LYS TYR LEU PRO SER VAL ILE ALA SEQRES 15 B 258 GLY ALA ALA PHE HIS LEU ALA LEU TYR THR VAL THR GLY SEQRES 16 B 258 GLN SER TRP PRO GLU SER LEU ILE ARG LYS THR GLY TYR SEQRES 17 B 258 THR LEU GLU SER LEU LYS PRO CYS LEU MET ASP LEU HIS SEQRES 18 B 258 GLN THR TYR LEU LYS ALA PRO GLN HIS ALA GLN GLN SER SEQRES 19 B 258 ILE ARG GLU LYS TYR LYS ASN SER LYS TYR HIS GLY VAL SEQRES 20 B 258 SER LEU LEU ASN PRO PRO GLU THR LEU ASN LEU SEQRES 1 C 298 MET GLU ASN PHE GLN LYS VAL GLU LYS ILE GLY GLU GLY SEQRES 2 C 298 THR TYR GLY VAL VAL TYR LYS ALA ARG ASN LYS LEU THR SEQRES 3 C 298 GLY GLU VAL VAL ALA LEU LYS LYS ILE ARG LEU ASP THR SEQRES 4 C 298 GLU THR GLU GLY VAL PRO SER THR ALA ILE ARG GLU ILE SEQRES 5 C 298 SER LEU LEU LYS GLU LEU ASN HIS PRO ASN ILE VAL LYS SEQRES 6 C 298 LEU LEU ASP VAL ILE HIS THR GLU ASN LYS LEU TYR LEU SEQRES 7 C 298 VAL PHE GLU PHE LEU HIS GLN ASP LEU LYS LYS PHE MET SEQRES 8 C 298 ASP ALA SER ALA LEU THR GLY ILE PRO LEU PRO LEU ILE SEQRES 9 C 298 LYS SER TYR LEU PHE GLN LEU LEU GLN GLY LEU ALA PHE SEQRES 10 C 298 CYS HIS SER HIS ARG VAL LEU HIS ARG ASP LEU LYS PRO SEQRES 11 C 298 GLN ASN LEU LEU ILE ASN THR GLU GLY ALA ILE LYS LEU SEQRES 12 C 298 ALA ASP PHE GLY LEU ALA ARG ALA PHE GLY VAL PRO VAL SEQRES 13 C 298 ARG THR TYR TPO HIS GLU VAL VAL THR LEU TRP TYR ARG SEQRES 14 C 298 ALA PRO GLU ILE LEU LEU GLY CYS LYS TYR TYR SER THR SEQRES 15 C 298 ALA VAL ASP ILE TRP SER LEU GLY CYS ILE PHE ALA GLU SEQRES 16 C 298 MET VAL THR ARG ARG ALA LEU PHE PRO GLY ASP SER GLU SEQRES 17 C 298 ILE ASP GLN LEU PHE ARG ILE PHE ARG THR LEU GLY THR SEQRES 18 C 298 PRO ASP GLU VAL VAL TRP PRO GLY VAL THR SER MET PRO SEQRES 19 C 298 ASP TYR LYS PRO SER PHE PRO LYS TRP ALA ARG GLN ASP SEQRES 20 C 298 PHE SER LYS VAL VAL PRO PRO LEU ASP GLU ASP GLY ARG SEQRES 21 C 298 SER LEU LEU SER GLN MET LEU HIS TYR ASP PRO ASN LYS SEQRES 22 C 298 ARG ILE SER ALA LYS ALA ALA LEU ALA HIS PRO PHE PHE SEQRES 23 C 298 GLN ASP VAL THR LYS PRO VAL PRO HIS LEU ARG LEU SEQRES 1 D 258 VAL PRO ASP TYR HIS GLU ASP ILE HIS THR TYR LEU ARG SEQRES 2 D 258 GLU MET GLU VAL LYS CYS LYS PRO LYS VAL GLY TYR MET SEQRES 3 D 258 LYS LYS GLN PRO ASP ILE THR ASN SER MET ARG ALA ILE SEQRES 4 D 258 LEU VAL ASP TRP LEU VAL GLU VAL GLY GLU GLU TYR LYS SEQRES 5 D 258 LEU GLN ASN GLU THR LEU HIS LEU ALA VAL ASN TYR ILE SEQRES 6 D 258 ASP ARG PHE LEU SER SER MET SER VAL LEU ARG GLY LYS SEQRES 7 D 258 LEU GLN LEU VAL GLY THR ALA ALA MET LEU LEU ALA SER SEQRES 8 D 258 LYS PHE GLU GLU ILE TYR PRO PRO GLU VAL ALA GLU PHE SEQRES 9 D 258 VAL TYR ILE THR ASP ASP THR TYR THR LYS LYS GLN VAL SEQRES 10 D 258 LEU ARG MET GLU HIS LEU VAL LEU LYS VAL LEU THR PHE SEQRES 11 D 258 ASP LEU ALA ALA PRO THR VAL ASN GLN PHE LEU THR GLN SEQRES 12 D 258 TYR PHE LEU HIS GLN GLN PRO ALA ASN CYS LYS VAL GLU SEQRES 13 D 258 SER LEU ALA MET PHE LEU GLY GLU LEU SER LEU ILE ASP SEQRES 14 D 258 ALA ASP PRO TYR LEU LYS TYR LEU PRO SER VAL ILE ALA SEQRES 15 D 258 GLY ALA ALA PHE HIS LEU ALA LEU TYR THR VAL THR GLY SEQRES 16 D 258 GLN SER TRP PRO GLU SER LEU ILE ARG LYS THR GLY TYR SEQRES 17 D 258 THR LEU GLU SER LEU LYS PRO CYS LEU MET ASP LEU HIS SEQRES 18 D 258 GLN THR TYR LEU LYS ALA PRO GLN HIS ALA GLN GLN SER SEQRES 19 D 258 ILE ARG GLU LYS TYR LYS ASN SER LYS TYR HIS GLY VAL SEQRES 20 D 258 SER LEU LEU ASN PRO PRO GLU THR LEU ASN LEU MODRES 1JST TPO A 160 THR PHOSPHOTHREONINE MODRES 1JST TPO C 160 THR PHOSPHOTHREONINE HET TPO A 160 11 HET TPO C 160 11 HET MN A 299 1 HET ATP A 300 31 HET MN C 299 1 HET ATP C 300 31 HETNAM TPO PHOSPHOTHREONINE HETNAM MN MANGANESE (II) ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 TPO 2(C4 H10 N O6 P) FORMUL 5 MN 2(MN 2+) FORMUL 6 ATP 2(C10 H16 N5 O13 P3) FORMUL 9 HOH *98(H2 O) HELIX 1 1 SER A 46 LEU A 55 1 10 HELIX 2 2 LEU A 87 ALA A 93 1 7 HELIX 3 3 LEU A 101 HIS A 121 1 21 HELIX 4 4 PRO A 130 ASN A 132 5 3 HELIX 5 5 LEU A 166 TYR A 168 5 3 HELIX 6 6 PRO A 171 LEU A 174 1 4 HELIX 7 7 THR A 182 THR A 198 5 17 HELIX 8 8 GLU A 208 LEU A 219 1 12 HELIX 9 9 VAL A 230 SER A 232 5 3 HELIX 10 10 PHE A 248 VAL A 251 1 4 HELIX 11 11 GLU A 257 MET A 266 1 10 HELIX 12 12 ALA A 277 ALA A 280 1 4 HELIX 13 13 PRO A 284 ASP A 288 5 5 HELIX 14 14 PRO B 176 LYS B 192 5 17 HELIX 15 15 TYR B 199 LYS B 202 1 4 HELIX 16 16 ASN B 208 GLU B 224 1 17 HELIX 17 17 ASN B 229 LEU B 243 1 15 HELIX 18 18 LEU B 253 GLU B 268 1 16 HELIX 19 19 VAL B 275 ILE B 281 1 7 HELIX 20 20 LYS B 288 VAL B 301 1 14 HELIX 21 21 VAL B 311 HIS B 321 1 11 HELIX 22 22 CYS B 327 ILE B 342 1 16 HELIX 23 23 ALA B 344 LYS B 349 1 6 HELIX 24 24 PRO B 352 THR B 368 1 17 HELIX 25 25 GLU B 374 THR B 380 1 7 HELIX 26 26 LEU B 384 GLN B 403 1 20 HELIX 27 27 SER B 408 LYS B 412 1 5 HELIX 28 28 SER B 416 TYR B 418 5 3 HELIX 29 29 VAL B 421 LEU B 423 5 3 HELIX 30 30 SER C 46 GLU C 57 1 12 HELIX 31 31 LEU C 87 ALA C 93 1 7 HELIX 32 32 LEU C 101 HIS C 121 1 21 HELIX 33 33 PRO C 130 ASN C 132 5 3 HELIX 34 34 LEU C 166 TYR C 168 5 3 HELIX 35 35 PRO C 171 LEU C 174 1 4 HELIX 36 36 THR C 182 VAL C 197 5 16 HELIX 37 37 GLU C 208 LEU C 219 1 12 HELIX 38 38 VAL C 230 SER C 232 5 3 HELIX 39 39 PHE C 248 VAL C 251 1 4 HELIX 40 40 GLU C 257 MET C 266 1 10 HELIX 41 41 PRO C 271 LYS C 273 5 3 HELIX 42 42 ALA C 277 ALA C 282 1 6 HELIX 43 43 PRO C 284 ASP C 288 5 5 HELIX 44 44 TYR D 178 GLU D 190 1 13 HELIX 45 45 TYR D 199 LYS D 202 5 4 HELIX 46 46 ASN D 208 TYR D 225 1 18 HELIX 47 47 ASN D 229 SER D 245 1 17 HELIX 48 48 LEU D 253 GLU D 268 1 16 HELIX 49 49 VAL D 275 THR D 282 1 8 HELIX 50 50 LYS D 288 VAL D 301 1 14 HELIX 51 51 VAL D 311 HIS D 321 1 11 HELIX 52 52 CYS D 327 ILE D 342 1 16 HELIX 53 53 ALA D 344 LYS D 349 1 6 HELIX 54 54 PRO D 352 THR D 368 1 17 HELIX 55 55 GLU D 374 THR D 380 1 7 HELIX 56 56 LYS D 388 GLN D 403 1 16 HELIX 57 57 SER D 408 LYS D 414 1 7 HELIX 58 58 VAL D 421 LEU D 423 5 3 SHEET 1 A 5 LEU A 66 HIS A 71 0 SHEET 2 A 5 LEU A 76 GLU A 81 -1 N VAL A 79 O LEU A 67 SHEET 3 A 5 VAL A 29 ILE A 35 -1 N ILE A 35 O LEU A 76 SHEET 4 A 5 VAL A 18 ASN A 23 -1 N ALA A 21 O VAL A 30 SHEET 5 A 5 PHE A 4 LYS A 9 -1 N GLU A 8 O LYS A 20 SHEET 1 B 2 LEU A 133 ILE A 135 0 SHEET 2 B 2 ILE A 141 LEU A 143 -1 N LYS A 142 O LEU A 134 SHEET 1 C 5 LEU C 66 HIS C 71 0 SHEET 2 C 5 LYS C 75 GLU C 81 -1 N VAL C 79 O LEU C 67 SHEET 3 C 5 VAL C 29 ARG C 36 -1 N ILE C 35 O LEU C 76 SHEET 4 C 5 TYR C 19 ASN C 23 -1 N ALA C 21 O VAL C 30 SHEET 5 C 5 PHE C 4 LYS C 9 -1 N GLU C 8 O LYS C 20 SHEET 1 D 2 LEU C 133 ILE C 135 0 SHEET 2 D 2 ILE C 141 LEU C 143 -1 N LYS C 142 O LEU C 134 LINK C TYR A 159 N TPO A 160 1555 1555 1.32 LINK C TPO A 160 N HIS A 161 1555 1555 1.33 LINK C TYR C 159 N TPO C 160 1555 1555 1.32 LINK C TPO C 160 N HIS C 161 1555 1555 1.34 LINK OD1 ASN A 132 MN MN A 299 1555 1555 2.28 LINK MN MN A 299 O2A ATP A 300 1555 1555 2.48 LINK OD1 ASN C 132 MN MN C 299 1555 1555 2.23 LINK MN MN C 299 O2G ATP C 300 1555 1555 2.43 LINK MN MN C 299 O5' ATP C 300 1555 1555 2.52 CISPEP 1 VAL A 154 PRO A 155 0 -0.81 CISPEP 2 GLN B 323 PRO B 324 0 -0.55 CISPEP 3 ASP B 345 PRO B 346 0 -0.34 CISPEP 4 VAL C 154 PRO C 155 0 -0.07 CISPEP 5 GLN D 323 PRO D 324 0 0.10 CISPEP 6 ASP D 345 PRO D 346 0 0.56 SITE 1 AC1 3 ASN A 132 ASP A 145 ATP A 300 SITE 1 AC2 3 ASN C 132 ASP C 145 ATP C 300 SITE 1 AC3 18 ILE A 10 GLY A 11 GLU A 12 GLY A 13 SITE 2 AC3 18 THR A 14 TYR A 15 VAL A 18 ALA A 31 SITE 3 AC3 18 LYS A 33 GLU A 51 PHE A 80 GLU A 81 SITE 4 AC3 18 PHE A 82 LEU A 83 ASP A 86 ASP A 145 SITE 5 AC3 18 MN A 299 HOH A 329 SITE 1 AC4 18 ILE C 10 GLY C 11 GLY C 13 THR C 14 SITE 2 AC4 18 TYR C 15 GLY C 16 VAL C 18 ALA C 31 SITE 3 AC4 18 LYS C 33 GLU C 81 PHE C 82 LEU C 83 SITE 4 AC4 18 ASP C 86 GLN C 131 LEU C 134 ASP C 145 SITE 5 AC4 18 MN C 299 HOH C 316 CRYST1 139.600 149.100 74.200 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007163 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006707 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013477 0.00000