HEADER TRANSCRIPTION 20-AUG-01 1JT6 TITLE CRYSTAL STRUCTURE OF THE MULTIDRUG BINDING PROTEIN QACR BOUND TO TITLE 2 DEQUALINIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN QACA 5'REGION; COMPND 3 CHAIN: B, D, A, E; COMPND 4 SYNONYM: QACR REPRESSOR, ORF 188; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: DH5A; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PSK5210 KEYWDS MUTLIDRUG BINDING RECOGNITION, QACR, MULITDRUG RESISTANCE, S. AUREUS, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SCHUMACHER,M.C.MILLER,S.GRKOVIC,M.H.BROWN,R.A.SKURRAY,R.G.BRENNAN REVDAT 6 03-APR-24 1JT6 1 REMARK REVDAT 5 07-FEB-24 1JT6 1 REMARK REVDAT 4 27-OCT-21 1JT6 1 REMARK SEQADV REVDAT 3 02-JUN-09 1JT6 1 REMARK REVDAT 2 24-FEB-09 1JT6 1 VERSN REVDAT 1 12-DEC-01 1JT6 0 JRNL AUTH M.A.SCHUMACHER,M.C.MILLER,S.GRKOVIC,M.H.BROWN,R.A.SKURRAY, JRNL AUTH 2 R.G.BRENNAN JRNL TITL STRUCTURAL MECHANISMS OF QACR INDUCTION AND MULTIDRUG JRNL TITL 2 RECOGNITION. JRNL REF SCIENCE V. 294 2158 2001 JRNL REFN ISSN 0036-8075 JRNL PMID 11739955 JRNL DOI 10.1126/SCIENCE.1066020 REMARK 2 REMARK 2 RESOLUTION. 2.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 86.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1917643.650 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 37103 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4733 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.70 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6998 REMARK 3 BIN R VALUE (WORKING SET) : 0.3350 REMARK 3 BIN FREE R VALUE : 0.3810 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 750 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6188 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 174 REMARK 3 SOLVENT ATOMS : 137 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.66000 REMARK 3 B22 (A**2) : 4.66000 REMARK 3 B33 (A**2) : -9.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.33 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.42 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.010 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.900 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.470 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.580 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.720 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 69.11 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : UNK_PAR-2.TXT REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : UNK_TOP.TXT REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JT6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-01. REMARK 100 THE DEPOSITION ID IS D_1000014154. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-DEC-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50664 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.540 REMARK 200 RESOLUTION RANGE LOW (A) : 86.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : 0.41000 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: QACR-R6G STRUCTURE MINUS R6G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 86.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 86.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.30000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 86.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 86.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.30000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 86.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 86.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 47.30000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 86.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 86.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 47.30000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: QACR IS A DIMER AND THERE ARE TWO DIMERS IN THE ASYMMETRIC REMARK 300 UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -160.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -198.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 LYS B 188 REMARK 465 MET D 1 REMARK 465 LYS D 188 REMARK 465 MET A 1 REMARK 465 LYS A 188 REMARK 465 MET E 1 REMARK 465 LYS E 188 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 21 OE2 GLU B 105 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO E 94 C - N - CA ANGL. DEV. = -9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 4 8.41 -63.23 REMARK 500 ASN B 18 -110.86 -105.21 REMARK 500 GLU B 33 93.43 35.21 REMARK 500 TYR B 41 -88.31 -64.77 REMARK 500 LYS B 44 -71.09 -55.96 REMARK 500 THR B 89 164.69 -42.26 REMARK 500 TYR B 92 -62.70 65.26 REMARK 500 TYR B 106 12.86 -160.16 REMARK 500 TRP B 140 -169.37 -172.99 REMARK 500 ASP B 144 76.31 -112.70 REMARK 500 GLU B 165 -38.61 -162.74 REMARK 500 ASN B 167 134.77 -38.90 REMARK 500 LEU D 3 -38.31 -165.95 REMARK 500 GLU D 33 86.67 31.56 REMARK 500 SER D 34 -157.68 -162.93 REMARK 500 LYS D 44 -94.51 84.06 REMARK 500 LYS D 71 5.45 -58.53 REMARK 500 TYR D 92 -62.99 62.68 REMARK 500 LYS D 108 -75.41 -57.42 REMARK 500 THR D 109 100.82 -57.23 REMARK 500 LEU D 136 29.07 -72.39 REMARK 500 ASN D 137 6.99 -157.95 REMARK 500 SER A 34 -141.99 -120.87 REMARK 500 LYS A 44 -55.01 73.13 REMARK 500 GLU A 105 -6.84 -175.93 REMARK 500 LEU A 136 -5.90 -56.92 REMARK 500 TYR E 92 -75.88 62.32 REMARK 500 ASN E 97 -75.39 -50.49 REMARK 500 LEU E 136 25.13 -75.25 REMARK 500 TRP E 140 -168.91 -170.29 REMARK 500 ASN E 143 -77.28 -49.27 REMARK 500 HIS E 164 -7.31 -50.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 107 0.06 SIDE CHAIN REMARK 500 TYR B 123 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 599 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 899 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 269 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 270 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 699 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 999 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 399 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 799 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 289 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 199 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 499 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 279 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 280 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 239 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 779 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 639 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DEQ A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JT0 RELATED DB: PDB REMARK 900 QACR-DNA COMPLEX REMARK 900 RELATED ID: 1JTY RELATED DB: PDB REMARK 900 QACR-ETHIDIUM COMPLEX REMARK 900 RELATED ID: 1JUM RELATED DB: PDB REMARK 900 QACR-BERBERINE COMPLEX REMARK 900 RELATED ID: 1JUP RELATED DB: PDB REMARK 900 QACR-MALCHITE GREEN COMPLEX REMARK 900 RELATED ID: 1JUS RELATED DB: PDB REMARK 900 QACR-RHODAMINE 6G COMPLEX DBREF 1JT6 A 1 188 UNP P0A0N4 QACR_STAAU 1 188 DBREF 1JT6 B 1 188 UNP P0A0N4 QACR_STAAU 1 188 DBREF 1JT6 E 1 188 UNP P0A0N4 QACR_STAAU 1 188 DBREF 1JT6 D 1 188 UNP P0A0N4 QACR_STAAU 1 188 SEQADV 1JT6 ALA A 72 UNP P0A0N4 CYS 72 ENGINEERED MUTATION SEQADV 1JT6 SER A 141 UNP P0A0N4 CYS 141 ENGINEERED MUTATION SEQADV 1JT6 ALA B 72 UNP P0A0N4 CYS 72 ENGINEERED MUTATION SEQADV 1JT6 SER B 141 UNP P0A0N4 CYS 141 ENGINEERED MUTATION SEQADV 1JT6 ALA E 72 UNP P0A0N4 CYS 72 ENGINEERED MUTATION SEQADV 1JT6 SER E 141 UNP P0A0N4 CYS 141 ENGINEERED MUTATION SEQADV 1JT6 ALA D 72 UNP P0A0N4 CYS 72 ENGINEERED MUTATION SEQADV 1JT6 SER D 141 UNP P0A0N4 CYS 141 ENGINEERED MUTATION SEQRES 1 B 188 MET ASN LEU LYS ASP LYS ILE LEU GLY VAL ALA LYS GLU SEQRES 2 B 188 LEU PHE ILE LYS ASN GLY TYR ASN ALA THR THR THR GLY SEQRES 3 B 188 GLU ILE VAL LYS LEU SER GLU SER SER LYS GLY ASN LEU SEQRES 4 B 188 TYR TYR HIS PHE LYS THR LYS GLU ASN LEU PHE LEU GLU SEQRES 5 B 188 ILE LEU ASN ILE GLU GLU SER LYS TRP GLN GLU GLN TRP SEQRES 6 B 188 LYS LYS GLU GLN ILE LYS ALA LYS THR ASN ARG GLU LYS SEQRES 7 B 188 PHE TYR LEU TYR ASN GLU LEU SER LEU THR THR GLU TYR SEQRES 8 B 188 TYR TYR PRO LEU GLN ASN ALA ILE ILE GLU PHE TYR THR SEQRES 9 B 188 GLU TYR TYR LYS THR ASN SER ILE ASN GLU LYS MET ASN SEQRES 10 B 188 LYS LEU GLU ASN LYS TYR ILE ASP ALA TYR HIS VAL ILE SEQRES 11 B 188 PHE LYS GLU GLY ASN LEU ASN GLY GLU TRP SER ILE ASN SEQRES 12 B 188 ASP VAL ASN ALA VAL SER LYS ILE ALA ALA ASN ALA VAL SEQRES 13 B 188 ASN GLY ILE VAL THR PHE THR HIS GLU GLN ASN ILE ASN SEQRES 14 B 188 GLU ARG ILE LYS LEU MET ASN LYS PHE SER GLN ILE PHE SEQRES 15 B 188 LEU ASN GLY LEU SER LYS SEQRES 1 D 188 MET ASN LEU LYS ASP LYS ILE LEU GLY VAL ALA LYS GLU SEQRES 2 D 188 LEU PHE ILE LYS ASN GLY TYR ASN ALA THR THR THR GLY SEQRES 3 D 188 GLU ILE VAL LYS LEU SER GLU SER SER LYS GLY ASN LEU SEQRES 4 D 188 TYR TYR HIS PHE LYS THR LYS GLU ASN LEU PHE LEU GLU SEQRES 5 D 188 ILE LEU ASN ILE GLU GLU SER LYS TRP GLN GLU GLN TRP SEQRES 6 D 188 LYS LYS GLU GLN ILE LYS ALA LYS THR ASN ARG GLU LYS SEQRES 7 D 188 PHE TYR LEU TYR ASN GLU LEU SER LEU THR THR GLU TYR SEQRES 8 D 188 TYR TYR PRO LEU GLN ASN ALA ILE ILE GLU PHE TYR THR SEQRES 9 D 188 GLU TYR TYR LYS THR ASN SER ILE ASN GLU LYS MET ASN SEQRES 10 D 188 LYS LEU GLU ASN LYS TYR ILE ASP ALA TYR HIS VAL ILE SEQRES 11 D 188 PHE LYS GLU GLY ASN LEU ASN GLY GLU TRP SER ILE ASN SEQRES 12 D 188 ASP VAL ASN ALA VAL SER LYS ILE ALA ALA ASN ALA VAL SEQRES 13 D 188 ASN GLY ILE VAL THR PHE THR HIS GLU GLN ASN ILE ASN SEQRES 14 D 188 GLU ARG ILE LYS LEU MET ASN LYS PHE SER GLN ILE PHE SEQRES 15 D 188 LEU ASN GLY LEU SER LYS SEQRES 1 A 188 MET ASN LEU LYS ASP LYS ILE LEU GLY VAL ALA LYS GLU SEQRES 2 A 188 LEU PHE ILE LYS ASN GLY TYR ASN ALA THR THR THR GLY SEQRES 3 A 188 GLU ILE VAL LYS LEU SER GLU SER SER LYS GLY ASN LEU SEQRES 4 A 188 TYR TYR HIS PHE LYS THR LYS GLU ASN LEU PHE LEU GLU SEQRES 5 A 188 ILE LEU ASN ILE GLU GLU SER LYS TRP GLN GLU GLN TRP SEQRES 6 A 188 LYS LYS GLU GLN ILE LYS ALA LYS THR ASN ARG GLU LYS SEQRES 7 A 188 PHE TYR LEU TYR ASN GLU LEU SER LEU THR THR GLU TYR SEQRES 8 A 188 TYR TYR PRO LEU GLN ASN ALA ILE ILE GLU PHE TYR THR SEQRES 9 A 188 GLU TYR TYR LYS THR ASN SER ILE ASN GLU LYS MET ASN SEQRES 10 A 188 LYS LEU GLU ASN LYS TYR ILE ASP ALA TYR HIS VAL ILE SEQRES 11 A 188 PHE LYS GLU GLY ASN LEU ASN GLY GLU TRP SER ILE ASN SEQRES 12 A 188 ASP VAL ASN ALA VAL SER LYS ILE ALA ALA ASN ALA VAL SEQRES 13 A 188 ASN GLY ILE VAL THR PHE THR HIS GLU GLN ASN ILE ASN SEQRES 14 A 188 GLU ARG ILE LYS LEU MET ASN LYS PHE SER GLN ILE PHE SEQRES 15 A 188 LEU ASN GLY LEU SER LYS SEQRES 1 E 188 MET ASN LEU LYS ASP LYS ILE LEU GLY VAL ALA LYS GLU SEQRES 2 E 188 LEU PHE ILE LYS ASN GLY TYR ASN ALA THR THR THR GLY SEQRES 3 E 188 GLU ILE VAL LYS LEU SER GLU SER SER LYS GLY ASN LEU SEQRES 4 E 188 TYR TYR HIS PHE LYS THR LYS GLU ASN LEU PHE LEU GLU SEQRES 5 E 188 ILE LEU ASN ILE GLU GLU SER LYS TRP GLN GLU GLN TRP SEQRES 6 E 188 LYS LYS GLU GLN ILE LYS ALA LYS THR ASN ARG GLU LYS SEQRES 7 E 188 PHE TYR LEU TYR ASN GLU LEU SER LEU THR THR GLU TYR SEQRES 8 E 188 TYR TYR PRO LEU GLN ASN ALA ILE ILE GLU PHE TYR THR SEQRES 9 E 188 GLU TYR TYR LYS THR ASN SER ILE ASN GLU LYS MET ASN SEQRES 10 E 188 LYS LEU GLU ASN LYS TYR ILE ASP ALA TYR HIS VAL ILE SEQRES 11 E 188 PHE LYS GLU GLY ASN LEU ASN GLY GLU TRP SER ILE ASN SEQRES 12 E 188 ASP VAL ASN ALA VAL SER LYS ILE ALA ALA ASN ALA VAL SEQRES 13 E 188 ASN GLY ILE VAL THR PHE THR HIS GLU GLN ASN ILE ASN SEQRES 14 E 188 GLU ARG ILE LYS LEU MET ASN LYS PHE SER GLN ILE PHE SEQRES 15 E 188 LEU ASN GLY LEU SER LYS HET SO4 B 600 5 HET SO4 B 219 5 HET SO4 B 199 5 HET SO4 B 499 5 HET SO4 B 700 5 HET SO4 B1000 5 HET SO4 D 899 5 HET SO4 D 269 5 HET SO4 D 270 5 HET SO4 D 999 5 HET SO4 D 280 5 HET SO4 D 779 5 HET SO4 D 639 5 HET SO4 D 400 5 HET SO4 A 599 5 HET SO4 A 299 5 HET SO4 A 699 5 HET SO4 A 799 5 HET SO4 A 800 5 HET SO4 A 801 5 HET SO4 A 279 5 HET SO4 A 601 5 HET SO4 A 579 5 HET DEQ A 201 34 HET SO4 E 900 5 HET SO4 E 249 5 HET SO4 E 399 5 HET SO4 E 289 5 HET SO4 E 239 5 HETNAM SO4 SULFATE ION HETNAM DEQ DEQUALINIUM HETSYN DEQ DEQUADIN FORMUL 5 SO4 28(O4 S 2-) FORMUL 28 DEQ C30 H40 N4 2+ FORMUL 34 HOH *137(H2 O) HELIX 1 1 ASP B 5 ASN B 18 1 14 HELIX 2 2 THR B 24 GLU B 33 1 10 HELIX 3 3 GLY B 37 TYR B 41 5 5 HELIX 4 4 THR B 45 LYS B 67 1 23 HELIX 5 5 GLU B 68 ALA B 72 5 5 HELIX 6 6 THR B 74 LEU B 87 1 14 HELIX 7 7 TYR B 92 PRO B 94 5 3 HELIX 8 8 LEU B 95 GLU B 105 1 11 HELIX 9 9 ASN B 110 ASN B 137 1 28 HELIX 10 10 ASP B 144 THR B 163 1 20 HELIX 11 11 ASN B 167 SER B 187 1 21 HELIX 12 12 LEU D 3 GLY D 19 1 17 HELIX 13 13 THR D 24 SER D 32 1 9 HELIX 14 14 SER D 35 PHE D 43 1 9 HELIX 15 15 THR D 45 GLN D 69 1 25 HELIX 16 16 ILE D 70 ALA D 72 5 3 HELIX 17 17 THR D 74 THR D 89 1 16 HELIX 18 18 TYR D 92 PRO D 94 5 3 HELIX 19 19 LEU D 95 GLU D 105 1 11 HELIX 20 20 THR D 109 LEU D 136 1 28 HELIX 21 21 ASP D 144 THR D 163 1 20 HELIX 22 22 ASN D 167 LEU D 186 1 20 HELIX 23 23 ASN A 2 GLY A 19 1 18 HELIX 24 24 THR A 24 SER A 32 1 9 HELIX 25 25 SER A 35 LYS A 44 1 10 HELIX 26 26 THR A 45 GLN A 69 1 25 HELIX 27 27 ILE A 70 ALA A 72 5 3 HELIX 28 28 THR A 74 TYR A 92 1 19 HELIX 29 29 LEU A 95 THR A 104 1 10 HELIX 30 30 THR A 109 LEU A 136 1 28 HELIX 31 31 ASP A 144 PHE A 162 1 19 HELIX 32 32 ASN A 167 GLY A 185 1 19 HELIX 33 33 ASN E 2 GLY E 19 1 18 HELIX 34 34 THR E 24 SER E 32 1 9 HELIX 35 35 SER E 35 PHE E 43 1 9 HELIX 36 36 THR E 45 GLN E 69 1 25 HELIX 37 37 ILE E 70 ALA E 72 5 3 HELIX 38 38 THR E 74 THR E 89 1 16 HELIX 39 39 TYR E 92 PRO E 94 5 3 HELIX 40 40 LEU E 95 TYR E 107 1 13 HELIX 41 41 THR E 109 LEU E 136 1 28 HELIX 42 42 ASP E 144 PHE E 162 1 19 HELIX 43 43 ASN E 167 GLY E 185 1 19 SITE 1 AC1 3 ASN A 2 ASP A 5 LYS A 6 SITE 1 AC2 4 LYS B 12 ILE B 56 GLU B 57 LYS B 60 SITE 1 AC3 4 LYS A 4 HIS A 42 HOH A 835 HOH A 845 SITE 1 AC4 5 THR D 25 TYR D 40 THR D 45 LYS D 46 SITE 2 AC4 5 SO4 D 999 SITE 1 AC5 4 THR E 24 THR E 25 GLY E 26 LYS E 36 SITE 1 AC6 5 LYS B 66 ASN D 2 LEU D 3 LYS D 4 SITE 2 AC6 5 HIS D 42 SITE 1 AC7 3 THR D 24 GLY D 26 GLU D 27 SITE 1 AC8 4 LYS E 36 TYR E 40 THR E 45 LYS E 46 SITE 1 AC9 2 LYS A 36 LYS E 60 SITE 1 BC1 5 TYR D 20 LYS D 46 GLU D 105 TYR D 106 SITE 2 BC1 5 SO4 D 899 SITE 1 BC2 3 HIS B 128 LYS B 132 TYR D 41 SITE 1 BC3 5 LYS E 12 ILE E 53 ILE E 56 GLU E 57 SITE 2 BC3 5 HOH E 924 SITE 1 BC4 5 LYS A 36 TYR A 40 HOH A 842 ASN E 2 SITE 2 BC4 5 ASP E 5 SITE 1 BC5 4 THR A 23 THR A 24 THR A 25 LYS A 46 SITE 1 BC6 3 LYS E 4 TYR E 41 HIS E 42 SITE 1 BC7 6 GLN B 64 GLU B 90 TYR B 91 GLN D 64 SITE 2 BC7 6 GLU D 90 TYR D 91 SITE 1 BC8 4 LYS B 67 LYS D 60 GLU D 90 TYR D 91 SITE 1 BC9 1 ASN B 2 SITE 1 CC1 2 THR B 24 THR B 25 SITE 1 CC2 1 LYS A 132 SITE 1 CC3 6 ASN A 2 LEU A 3 LYS A 4 ASN A 38 SITE 2 CC3 6 HIS A 42 HOH A 845 SITE 1 CC4 5 ILE B 70 LYS B 73 HIS D 164 GLU D 165 SITE 2 CC4 5 TYR E 107 SITE 1 CC5 2 HIS E 128 LYS E 132 SITE 1 CC6 4 GLU D 13 LYS D 30 GLU D 33 HOH D1004 SITE 1 CC7 1 ASN A 2 SITE 1 CC8 3 LYS D 173 ASP E 144 ALA E 147 SITE 1 CC9 2 HIS D 128 LYS D 132 SITE 1 DC1 10 GLU A 57 TRP A 61 THR A 89 TYR A 93 SITE 2 DC1 10 TYR A 103 MET A 116 HOH A 825 ASN B 97 SITE 3 DC1 10 THR B 161 PHE B 162 CRYST1 172.000 172.000 94.600 90.00 90.00 90.00 P 42 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005814 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005814 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010571 0.00000