data_1JUC # _entry.id 1JUC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1JUC pdb_00001juc 10.2210/pdb1juc/pdb NDB UD0015 ? ? RCSB RCSB014195 ? ? WWPDB D_1000014195 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-02-22 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' diffrn_source # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1JUC _pdbx_database_status.recvd_initial_deposition_date 2001-08-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Thorpe, J.H.' 1 'Teixeira, S.C.M.' 2 'Gale, B.C.' 3 'Cardin, C.J.' 4 # _citation.id primary _citation.title ;Structural characterization of a new crystal form of the four-way Holliday junction formed by the DNA sequence d(CCGGTACCGG)2: sequence versus lattice? ; _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 58 _citation.page_first 567 _citation.page_last 569 _citation.year 2002 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11856858 _citation.pdbx_database_id_DOI 10.1107/S0907444902001555 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Thorpe, J.H.' 1 ? primary 'Teixeira, S.C.' 2 ? primary 'Gale, B.C.' 3 ? primary 'Cardin, C.J.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3'" 3045.992 2 ? ? ? ? 2 water nat water 18.015 43 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DG)(DG)(DT)(DA)(DC)(DC)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CCGGTACCGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DA n 1 7 DC n 1 8 DC n 1 9 DG n 1 10 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DG 10 10 10 DG G A . n B 1 1 DC 1 11 11 DC C B . n B 1 2 DC 2 12 12 DC C B . n B 1 3 DG 3 13 13 DG G B . n B 1 4 DG 4 14 14 DG G B . n B 1 5 DT 5 15 15 DT T B . n B 1 6 DA 6 16 16 DA A B . n B 1 7 DC 7 17 17 DC C B . n B 1 8 DC 8 18 18 DC C B . n B 1 9 DG 9 19 19 DG G B . n B 1 10 DG 10 20 20 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 103 103 HOH HOH A . C 2 HOH 2 105 105 HOH HOH A . C 2 HOH 3 107 107 HOH HOH A . C 2 HOH 4 109 109 HOH HOH A . C 2 HOH 5 110 110 HOH HOH A . C 2 HOH 6 111 111 HOH HOH A . C 2 HOH 7 113 113 HOH HOH A . C 2 HOH 8 115 115 HOH HOH A . C 2 HOH 9 116 116 HOH HOH A . C 2 HOH 10 119 119 HOH HOH A . C 2 HOH 11 120 120 HOH HOH A . C 2 HOH 12 122 122 HOH HOH A . C 2 HOH 13 123 123 HOH HOH A . C 2 HOH 14 125 125 HOH HOH A . C 2 HOH 15 126 126 HOH HOH A . C 2 HOH 16 129 129 HOH HOH A . C 2 HOH 17 132 132 HOH HOH A . C 2 HOH 18 133 133 HOH HOH A . C 2 HOH 19 138 138 HOH HOH A . C 2 HOH 20 139 139 HOH HOH A . C 2 HOH 21 141 141 HOH HOH A . C 2 HOH 22 143 143 HOH HOH A . D 2 HOH 1 101 101 HOH HOH B . D 2 HOH 2 102 102 HOH HOH B . D 2 HOH 3 104 104 HOH HOH B . D 2 HOH 4 106 106 HOH HOH B . D 2 HOH 5 108 108 HOH HOH B . D 2 HOH 6 112 112 HOH HOH B . D 2 HOH 7 114 114 HOH HOH B . D 2 HOH 8 117 117 HOH HOH B . D 2 HOH 9 118 118 HOH HOH B . D 2 HOH 10 121 121 HOH HOH B . D 2 HOH 11 124 124 HOH HOH B . D 2 HOH 12 127 127 HOH HOH B . D 2 HOH 13 128 128 HOH HOH B . D 2 HOH 14 130 130 HOH HOH B . D 2 HOH 15 131 131 HOH HOH B . D 2 HOH 16 134 134 HOH HOH B . D 2 HOH 17 135 135 HOH HOH B . D 2 HOH 18 136 136 HOH HOH B . D 2 HOH 19 137 137 HOH HOH B . D 2 HOH 20 140 140 HOH HOH B . D 2 HOH 21 142 142 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XFIT 'data reduction' . ? 1 REFMAC refinement 5.0 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _cell.entry_id 1JUC _cell.length_a 64.871 _cell.length_b 25.364 _cell.length_c 37.373 _cell.angle_alpha 90.00 _cell.angle_beta 110.57 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JUC _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # _exptl.entry_id 1JUC _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.24 _exptl_crystal.density_percent_sol 62.1 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 290.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details ;40 mM sodium cacodylate (pH 7.0), 12 mM spermine, 80 mM KCl, 10% (v/v) MPD equilibrated against 35% MPD with oligo concentration of 1 mM, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 290.0K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'sodium cacodylate' ? ? ? 1 2 1 spermine ? ? ? 1 4 1 KCl ? ? ? 1 5 1 MPD ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2001-07-28 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.073 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X31' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X31 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.073 # _reflns.entry_id 1JUC _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 4.0 _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 2.35 _reflns.number_obs 2387 _reflns.number_all 4339 _reflns.percent_possible_obs 96.3 _reflns.pdbx_Rmerge_I_obs 0.0640000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.35 _reflns_shell.d_res_low 2.43 _reflns_shell.percent_possible_all 97.3 _reflns_shell.Rmerge_I_obs 0.2670000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1JUC _refine.ls_number_reflns_obs 2286 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.92 _refine.ls_d_res_high 2.35 _refine.ls_percent_reflns_obs 96.41 _refine.ls_R_factor_obs 0.2284100 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2263900 _refine.ls_R_factor_R_free 0.2677900 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.4 _refine.ls_number_reflns_R_free 104 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.951 _refine.correlation_coeff_Fo_to_Fc_free 0.952 _refine.B_iso_mean 41.349 _refine.aniso_B[1][1] -2.92 _refine.aniso_B[2][2] 3.32 _refine.aniso_B[3][3] -0.41 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.01 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.376 _refine.pdbx_overall_ESU_R_Free 0.286 _refine.overall_SU_ML 0.325 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1JUC _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 0 _refine_analyze.occupancy_sum_hydrogen 0.00 _refine_analyze.occupancy_sum_non_hydrogen 426.00 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 404 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 43 _refine_hist.number_atoms_total 447 _refine_hist.d_res_high 2.35 _refine_hist.d_res_low 34.92 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.067 0.021 ? 452 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 181 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.195 3.000 ? 694 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.463 3.000 ? 459 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.518 0.200 ? 60 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.033 0.020 ? 208 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.268 0.300 ? 131 'X-RAY DIFFRACTION' ? r_nbd_other 0.329 0.300 ? 226 'X-RAY DIFFRACTION' ? r_nbtor_other 0.157 0.500 ? 2 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.523 0.500 ? 31 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other 0.025 0.500 ? 1 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.155 0.300 ? 20 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.213 0.300 ? 19 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.204 0.500 ? 11 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.35 _refine_ls_shell.d_res_low 2.411 _refine_ls_shell.number_reflns_R_work 157 _refine_ls_shell.R_factor_R_work 0.2970000 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3930000 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 7 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _pdbx_refine.entry_id 1JUC _pdbx_refine.R_factor_all_no_cutoff 0.2911000 _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.2503000 _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff 2979 _pdbx_refine.number_reflns_obs_no_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _database_PDB_matrix.entry_id 1JUC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _struct.entry_id 1JUC _struct.title 'Crystal Structure Analysis of a Holliday Junction Formed by CCGGTACCGG' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1JUC _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'HOLLIDAY JUNCTION, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1JUC _struct_ref.pdbx_db_accession 1JUC _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1JUC A 1 ? 10 ? 1JUC 1 ? 10 ? 1 10 2 1 1JUC B 1 ? 10 ? 1JUC 11 ? 20 ? 11 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DC 1 ? ? "C3'" A DC 1 ? ? 1.303 1.419 -0.116 0.006 N 2 1 "C1'" A DC 1 ? ? N1 A DC 1 ? ? 1.351 1.468 -0.117 0.014 N 3 1 N1 A DC 1 ? ? C6 A DC 1 ? ? 1.286 1.367 -0.081 0.006 N 4 1 N3 A DC 1 ? ? C4 A DC 1 ? ? 1.224 1.335 -0.111 0.007 N 5 1 "O3'" A DC 1 ? ? P A DC 2 ? ? 1.503 1.607 -0.104 0.012 Y 6 1 "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? 1.435 1.521 -0.086 0.010 N 7 1 "O3'" A DC 2 ? ? "C3'" A DC 2 ? ? 1.375 1.419 -0.044 0.006 N 8 1 N1 A DC 2 ? ? C6 A DC 2 ? ? 1.300 1.367 -0.067 0.006 N 9 1 N3 A DC 2 ? ? C4 A DC 2 ? ? 1.289 1.335 -0.046 0.007 N 10 1 P A DG 3 ? ? "O5'" A DG 3 ? ? 1.521 1.593 -0.072 0.010 N 11 1 "C5'" A DG 3 ? ? "C4'" A DG 3 ? ? 1.577 1.512 0.065 0.007 N 12 1 "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 1.608 1.529 0.079 0.010 N 13 1 "C2'" A DG 3 ? ? "C1'" A DG 3 ? ? 1.588 1.519 0.069 0.010 N 14 1 "O3'" A DG 3 ? ? "C3'" A DG 3 ? ? 1.346 1.419 -0.073 0.006 N 15 1 "C1'" A DG 3 ? ? N9 A DG 3 ? ? 1.379 1.468 -0.089 0.014 N 16 1 N3 A DG 3 ? ? C4 A DG 3 ? ? 1.399 1.350 0.049 0.007 N 17 1 C6 A DG 3 ? ? N1 A DG 3 ? ? 1.437 1.391 0.046 0.007 N 18 1 C5 A DG 3 ? ? N7 A DG 3 ? ? 1.436 1.388 0.048 0.006 N 19 1 C6 A DG 3 ? ? O6 A DG 3 ? ? 1.344 1.237 0.107 0.009 N 20 1 "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? 1.555 1.512 0.043 0.007 N 21 1 N3 A DG 4 ? ? C4 A DG 4 ? ? 1.250 1.350 -0.100 0.007 N 22 1 C5 A DG 4 ? ? C6 A DG 4 ? ? 1.316 1.419 -0.103 0.010 N 23 1 C6 A DG 4 ? ? N1 A DG 4 ? ? 1.269 1.391 -0.122 0.007 N 24 1 C5 A DG 4 ? ? N7 A DG 4 ? ? 1.266 1.388 -0.122 0.006 N 25 1 N7 A DG 4 ? ? C8 A DG 4 ? ? 1.366 1.305 0.061 0.006 N 26 1 N9 A DG 4 ? ? C4 A DG 4 ? ? 1.306 1.375 -0.069 0.008 N 27 1 C2 A DG 4 ? ? N2 A DG 4 ? ? 1.256 1.341 -0.085 0.010 N 28 1 C6 A DG 4 ? ? O6 A DG 4 ? ? 1.144 1.237 -0.093 0.009 N 29 1 "C1'" A DT 5 ? ? N1 A DT 5 ? ? 1.583 1.488 0.095 0.013 N 30 1 C2 A DT 5 ? ? N3 A DT 5 ? ? 1.453 1.373 0.080 0.008 N 31 1 C5 A DT 5 ? ? C6 A DT 5 ? ? 1.396 1.339 0.057 0.007 N 32 1 C6 A DT 5 ? ? N1 A DT 5 ? ? 1.323 1.378 -0.055 0.007 N 33 1 P A DA 6 ? ? "O5'" A DA 6 ? ? 1.683 1.593 0.090 0.010 N 34 1 "C5'" A DA 6 ? ? "C4'" A DA 6 ? ? 1.592 1.512 0.080 0.007 N 35 1 "O3'" A DA 6 ? ? "C3'" A DA 6 ? ? 1.206 1.419 -0.213 0.006 N 36 1 N1 A DA 6 ? ? C2 A DA 6 ? ? 1.449 1.339 0.110 0.009 N 37 1 N7 A DA 6 ? ? C8 A DA 6 ? ? 1.360 1.311 0.049 0.007 N 38 1 N9 A DA 6 ? ? C4 A DA 6 ? ? 1.415 1.374 0.041 0.006 N 39 1 C6 A DA 6 ? ? N6 A DA 6 ? ? 1.394 1.335 0.059 0.008 N 40 1 "O3'" A DC 7 ? ? "C3'" A DC 7 ? ? 1.321 1.419 -0.098 0.006 N 41 1 "C1'" A DC 7 ? ? N1 A DC 7 ? ? 1.587 1.488 0.099 0.013 N 42 1 C2 A DC 7 ? ? O2 A DC 7 ? ? 1.170 1.240 -0.070 0.009 N 43 1 N1 A DC 7 ? ? C6 A DC 7 ? ? 1.310 1.367 -0.057 0.006 N 44 1 C2 A DC 7 ? ? N3 A DC 7 ? ? 1.292 1.353 -0.061 0.008 N 45 1 N3 A DC 7 ? ? C4 A DC 7 ? ? 1.255 1.335 -0.080 0.007 N 46 1 C4 A DC 7 ? ? C5 A DC 7 ? ? 1.501 1.425 0.076 0.008 N 47 1 "C1'" A DC 8 ? ? N1 A DC 8 ? ? 1.352 1.468 -0.116 0.014 N 48 1 C2 A DC 8 ? ? O2 A DC 8 ? ? 1.182 1.240 -0.058 0.009 N 49 1 "O4'" A DG 9 ? ? "C4'" A DG 9 ? ? 1.533 1.449 0.084 0.009 N 50 1 "O3'" A DG 9 ? ? "C3'" A DG 9 ? ? 1.371 1.419 -0.048 0.006 N 51 1 C5 A DG 9 ? ? N7 A DG 9 ? ? 1.427 1.388 0.039 0.006 N 52 1 N7 A DG 9 ? ? C8 A DG 9 ? ? 1.365 1.305 0.060 0.006 N 53 1 C2 A DG 9 ? ? N2 A DG 9 ? ? 1.256 1.341 -0.085 0.010 N 54 1 P A DG 10 ? ? OP2 A DG 10 ? ? 1.210 1.485 -0.275 0.017 N 55 1 "O5'" A DG 10 ? ? "C5'" A DG 10 ? ? 1.600 1.440 0.160 0.016 N 56 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? 1.487 1.420 0.067 0.011 N 57 1 "O4'" A DG 10 ? ? "C4'" A DG 10 ? ? 1.511 1.449 0.062 0.009 N 58 1 C4 A DG 10 ? ? C5 A DG 10 ? ? 1.308 1.379 -0.071 0.007 N 59 1 C8 A DG 10 ? ? N9 A DG 10 ? ? 1.271 1.374 -0.103 0.007 N 60 1 N9 A DG 10 ? ? C4 A DG 10 ? ? 1.458 1.375 0.083 0.008 N 61 1 C6 A DG 10 ? ? O6 A DG 10 ? ? 1.133 1.237 -0.104 0.009 N 62 1 "O5'" B DC 11 ? ? "C5'" B DC 11 ? ? 1.558 1.440 0.118 0.016 N 63 1 "C4'" B DC 11 ? ? "C3'" B DC 11 ? ? 1.598 1.529 0.069 0.010 N 64 1 "O3'" B DC 11 ? ? "C3'" B DC 11 ? ? 1.266 1.419 -0.153 0.006 N 65 1 N1 B DC 11 ? ? C6 B DC 11 ? ? 1.252 1.367 -0.115 0.006 N 66 1 C2 B DC 11 ? ? N3 B DC 11 ? ? 1.276 1.353 -0.077 0.008 N 67 1 N3 B DC 11 ? ? C4 B DC 11 ? ? 1.240 1.335 -0.095 0.007 N 68 1 "O3'" B DC 11 ? ? P B DC 12 ? ? 1.489 1.607 -0.118 0.012 Y 69 1 P B DC 12 ? ? OP1 B DC 12 ? ? 1.358 1.485 -0.127 0.017 N 70 1 "C4'" B DC 12 ? ? "C3'" B DC 12 ? ? 1.601 1.529 0.072 0.010 N 71 1 "C2'" B DC 12 ? ? "C1'" B DC 12 ? ? 1.445 1.518 -0.073 0.010 N 72 1 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? 1.512 1.420 0.092 0.011 N 73 1 "O3'" B DC 12 ? ? "C3'" B DC 12 ? ? 1.321 1.419 -0.098 0.006 N 74 1 N1 B DC 12 ? ? C2 B DC 12 ? ? 1.232 1.397 -0.165 0.010 N 75 1 N1 B DC 12 ? ? C6 B DC 12 ? ? 1.320 1.367 -0.047 0.006 N 76 1 C4 B DC 12 ? ? C5 B DC 12 ? ? 1.342 1.425 -0.083 0.008 N 77 1 "O4'" B DG 13 ? ? "C4'" B DG 13 ? ? 1.576 1.449 0.127 0.009 N 78 1 "O3'" B DG 13 ? ? "C3'" B DG 13 ? ? 1.251 1.419 -0.168 0.006 N 79 1 "C1'" B DG 13 ? ? N9 B DG 13 ? ? 1.383 1.468 -0.085 0.014 N 80 1 N1 B DG 13 ? ? C2 B DG 13 ? ? 1.478 1.373 0.105 0.008 N 81 1 C2 B DG 13 ? ? N3 B DG 13 ? ? 1.239 1.323 -0.084 0.008 N 82 1 N3 B DG 13 ? ? C4 B DG 13 ? ? 1.294 1.350 -0.056 0.007 N 83 1 C4 B DG 13 ? ? C5 B DG 13 ? ? 1.295 1.379 -0.084 0.007 N 84 1 C6 B DG 13 ? ? N1 B DG 13 ? ? 1.325 1.391 -0.066 0.007 N 85 1 N7 B DG 13 ? ? C8 B DG 13 ? ? 1.250 1.305 -0.055 0.006 N 86 1 N9 B DG 13 ? ? C4 B DG 13 ? ? 1.298 1.375 -0.077 0.008 N 87 1 C2 B DG 13 ? ? N2 B DG 13 ? ? 1.222 1.341 -0.119 0.010 N 88 1 C6 B DG 13 ? ? O6 B DG 13 ? ? 1.089 1.237 -0.148 0.009 N 89 1 "C5'" B DG 14 ? ? "C4'" B DG 14 ? ? 1.611 1.512 0.099 0.007 N 90 1 "O3'" B DG 14 ? ? "C3'" B DG 14 ? ? 1.342 1.419 -0.077 0.006 N 91 1 N1 B DG 14 ? ? C2 B DG 14 ? ? 1.451 1.373 0.078 0.008 N 92 1 N3 B DG 14 ? ? C4 B DG 14 ? ? 1.283 1.350 -0.067 0.007 N 93 1 C6 B DG 14 ? ? N1 B DG 14 ? ? 1.349 1.391 -0.042 0.007 N 94 1 C5 B DG 14 ? ? N7 B DG 14 ? ? 1.321 1.388 -0.067 0.006 N 95 1 N7 B DG 14 ? ? C8 B DG 14 ? ? 1.375 1.305 0.070 0.006 N 96 1 C8 B DG 14 ? ? N9 B DG 14 ? ? 1.312 1.374 -0.062 0.007 N 97 1 P B DT 15 ? ? OP2 B DT 15 ? ? 1.238 1.485 -0.247 0.017 N 98 1 P B DT 15 ? ? "O5'" B DT 15 ? ? 1.521 1.593 -0.072 0.010 N 99 1 "O5'" B DT 15 ? ? "C5'" B DT 15 ? ? 1.585 1.440 0.145 0.016 N 100 1 "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? 1.257 1.418 -0.161 0.012 N 101 1 "C1'" B DT 15 ? ? N1 B DT 15 ? ? 1.334 1.468 -0.134 0.014 N 102 1 N1 B DT 15 ? ? C2 B DT 15 ? ? 1.469 1.376 0.093 0.008 N 103 1 N3 B DT 15 ? ? C4 B DT 15 ? ? 1.259 1.382 -0.123 0.008 N 104 1 C5 B DT 15 ? ? C6 B DT 15 ? ? 1.396 1.339 0.057 0.007 N 105 1 C6 B DT 15 ? ? N1 B DT 15 ? ? 1.286 1.378 -0.092 0.007 N 106 1 C2 B DT 15 ? ? O2 B DT 15 ? ? 1.290 1.220 0.070 0.008 N 107 1 C4 B DT 15 ? ? O4 B DT 15 ? ? 1.162 1.228 -0.066 0.009 N 108 1 "O3'" B DT 15 ? ? P B DA 16 ? ? 1.468 1.607 -0.139 0.012 Y 109 1 "C2'" B DA 16 ? ? "C1'" B DA 16 ? ? 1.593 1.519 0.074 0.010 N 110 1 "O3'" B DA 16 ? ? "C3'" B DA 16 ? ? 1.377 1.419 -0.042 0.006 N 111 1 N3 B DA 16 ? ? C4 B DA 16 ? ? 1.290 1.344 -0.054 0.006 N 112 1 C4 B DA 16 ? ? C5 B DA 16 ? ? 1.307 1.383 -0.076 0.007 N 113 1 C6 B DA 16 ? ? N1 B DA 16 ? ? 1.237 1.351 -0.114 0.007 N 114 1 N7 B DA 16 ? ? C8 B DA 16 ? ? 1.228 1.311 -0.083 0.007 N 115 1 N9 B DA 16 ? ? C4 B DA 16 ? ? 1.287 1.374 -0.087 0.006 N 116 1 P B DC 17 ? ? "O5'" B DC 17 ? ? 1.522 1.593 -0.071 0.010 N 117 1 "C2'" B DC 17 ? ? "C1'" B DC 17 ? ? 1.406 1.518 -0.112 0.010 N 118 1 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? 1.195 1.418 -0.223 0.012 N 119 1 "O3'" B DC 17 ? ? "C3'" B DC 17 ? ? 1.308 1.419 -0.111 0.006 N 120 1 "C1'" B DC 17 ? ? N1 B DC 17 ? ? 1.374 1.468 -0.094 0.014 N 121 1 N1 B DC 17 ? ? C6 B DC 17 ? ? 1.329 1.367 -0.038 0.006 N 122 1 C2 B DC 17 ? ? N3 B DC 17 ? ? 1.283 1.353 -0.070 0.008 N 123 1 N3 B DC 17 ? ? C4 B DC 17 ? ? 1.292 1.335 -0.043 0.007 N 124 1 C4 B DC 17 ? ? C5 B DC 17 ? ? 1.371 1.425 -0.054 0.008 N 125 1 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? 1.537 1.420 0.117 0.011 N 126 1 "O3'" B DC 18 ? ? "C3'" B DC 18 ? ? 1.339 1.419 -0.080 0.006 N 127 1 N1 B DC 18 ? ? C2 B DC 18 ? ? 1.298 1.397 -0.099 0.010 N 128 1 N1 B DC 18 ? ? C6 B DC 18 ? ? 1.310 1.367 -0.057 0.006 N 129 1 C2 B DC 18 ? ? N3 B DC 18 ? ? 1.287 1.353 -0.066 0.008 N 130 1 N3 B DC 18 ? ? C4 B DC 18 ? ? 1.235 1.335 -0.100 0.007 N 131 1 "O3'" B DC 18 ? ? P B DG 19 ? ? 1.706 1.607 0.099 0.012 Y 132 1 P B DG 19 ? ? "O5'" B DG 19 ? ? 1.275 1.593 -0.318 0.010 N 133 1 "O5'" B DG 19 ? ? "C5'" B DG 19 ? ? 1.248 1.418 -0.170 0.025 N 134 1 "O4'" B DG 19 ? ? "C4'" B DG 19 ? ? 1.546 1.449 0.097 0.009 N 135 1 "O3'" B DG 19 ? ? "C3'" B DG 19 ? ? 1.542 1.435 0.107 0.013 N 136 1 "C1'" B DG 19 ? ? N9 B DG 19 ? ? 1.358 1.468 -0.110 0.014 N 137 1 C4 B DG 19 ? ? C5 B DG 19 ? ? 1.334 1.379 -0.045 0.007 N 138 1 C6 B DG 19 ? ? N1 B DG 19 ? ? 1.464 1.391 0.073 0.007 N 139 1 "C5'" B DG 20 ? ? "C4'" B DG 20 ? ? 1.612 1.512 0.100 0.007 N 140 1 C2 B DG 20 ? ? N3 B DG 20 ? ? 1.399 1.323 0.076 0.008 N 141 1 N3 B DG 20 ? ? C4 B DG 20 ? ? 1.282 1.350 -0.068 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? "C2'" A DC 2 ? ? 101.04 105.90 -4.86 0.80 N 2 1 C2 A DG 4 ? ? N3 A DG 4 ? ? C4 A DG 4 ? ? 108.66 111.90 -3.24 0.50 N 3 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 110.64 108.30 2.34 0.30 N 4 1 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 103.77 108.00 -4.23 0.70 N 5 1 "C4'" A DG 9 ? ? "C3'" A DG 9 ? ? "C2'" A DG 9 ? ? 97.37 102.20 -4.83 0.70 N 6 1 C6 B DG 13 ? ? N1 B DG 13 ? ? C2 B DG 13 ? ? 120.53 125.10 -4.57 0.60 N 7 1 "O4'" B DC 17 ? ? "C4'" B DC 17 ? ? "C3'" B DC 17 ? ? 92.43 104.50 -12.07 0.40 N 8 1 "C1'" B DC 17 ? ? "O4'" B DC 17 ? ? "C4'" B DC 17 ? ? 101.36 110.10 -8.74 1.00 N 9 1 "C4'" B DC 17 ? ? "C3'" B DC 17 ? ? "C2'" B DC 17 ? ? 109.45 103.10 6.35 0.90 N 10 1 "C3'" B DC 17 ? ? "C2'" B DC 17 ? ? "C1'" B DC 17 ? ? 92.19 102.40 -10.21 0.80 N 11 1 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? "C2'" B DC 17 ? ? 115.97 106.80 9.17 0.50 N 12 1 N1 B DC 17 ? ? "C1'" B DC 17 ? ? "C2'" B DC 17 ? ? 124.02 114.30 9.72 1.40 N 13 1 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 117.39 108.30 9.09 0.30 N 14 1 C6 B DC 17 ? ? N1 B DC 17 ? ? C2 B DC 17 ? ? 117.81 120.30 -2.49 0.40 N 15 1 C2 B DC 17 ? ? N1 B DC 17 ? ? "C1'" B DC 17 ? ? 125.93 118.80 7.13 1.10 N 16 1 P B DG 19 ? ? "O5'" B DG 19 ? ? "C5'" B DG 19 ? ? 110.09 120.90 -10.81 1.60 N 17 1 "O4'" B DG 19 ? ? "C4'" B DG 19 ? ? "C3'" B DG 19 ? ? 100.51 104.50 -3.99 0.40 N 18 1 C5 B DG 19 ? ? C6 B DG 19 ? ? O6 B DG 19 ? ? 124.94 128.60 -3.66 0.60 N 19 1 "O4'" B DG 20 ? ? "C4'" B DG 20 ? ? "C3'" B DG 20 ? ? 101.65 104.50 -2.85 0.40 N # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id "C1'" _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id B _pdbx_validate_chiral.auth_comp_id DC _pdbx_validate_chiral.auth_seq_id 17 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 140 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 1JUC _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 0.103 -0.143 -0.016 4.331 -9.945 0.474 1 A_DC1:DG20_B A 1 ? B 20 ? 19 1 1 A DC 2 1_555 B DG 9 1_555 -0.144 -0.255 0.003 5.371 -1.952 -5.086 2 A_DC2:DG19_B A 2 ? B 19 ? 19 1 1 A DG 3 1_555 B DC 8 1_555 -0.074 -0.110 0.445 2.140 1.353 -2.765 3 A_DG3:DC18_B A 3 ? B 18 ? 19 1 1 A DG 4 1_555 B DC 7 1_555 0.225 -0.291 -0.014 -5.630 -16.899 -10.137 4 A_DG4:DC17_B A 4 ? B 17 ? 19 1 1 A DT 5 1_555 B DA 6 1_555 -0.097 -0.214 0.531 -7.383 -9.505 -3.110 5 A_DT5:DA16_B A 5 ? B 16 ? 20 1 1 A DA 6 1_555 B DT 5 1_555 0.266 0.088 0.178 4.729 -7.031 -5.059 6 A_DA6:DT15_B A 6 ? B 15 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DC 2 1_555 B DG 9 1_555 0.494 2.131 3.458 7.457 0.739 39.287 3.026 0.201 3.528 1.086 -10.969 39.967 1 AA_DC1DC2:DG19DG20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DC 2 1_555 B DG 9 1_555 A DG 3 1_555 B DC 8 1_555 0.267 2.483 3.440 -1.937 -2.201 41.906 3.699 -0.580 3.297 -3.072 2.705 42.004 2 AA_DC2DG3:DC18DG19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DG 3 1_555 B DC 8 1_555 A DG 4 1_555 B DC 7 1_555 -0.920 1.491 3.809 -1.154 6.776 41.729 1.231 1.134 4.015 9.436 1.607 42.266 3 AA_DG3DG4:DC17DC18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DG 4 1_555 B DC 7 1_555 A DT 5 1_555 B DA 6 1_555 0.165 -0.303 3.336 -3.011 -3.683 27.233 0.281 -1.094 3.310 -7.746 6.334 27.637 4 AA_DG4DT5:DA16DC17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DT 5 1_555 B DA 6 1_555 A DA 6 1_555 B DT 5 1_555 0.187 0.615 3.046 4.721 2.640 35.871 0.640 0.323 3.081 4.257 -7.611 36.263 5 AA_DT5DA6:DT15DA16_BB A 5 ? B 16 ? A 6 ? B 15 ? # _atom_sites.entry_id 1JUC _atom_sites.fract_transf_matrix[1][1] 0.015415 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005785 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.039426 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028579 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P # loop_