HEADER TRANSFERASE 30-AUG-01 1JVN TITLE CRYSTAL STRUCTURE OF IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE: A TUNNEL TITLE 2 THROUGH A (BETA/ALPHA)8 BARREL JOINS TWO ACTIVE SITES COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL HISTIDINE BIOSYNTHESIS PROTEIN HISHF; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IMIDAZOLE GLYCEROPHOSPHATE SYNTHASE; GLUTAMINE COMPND 5 AMIDOTRANSFERASE:CYCLASE; HIS7P; CYCLASE HIS7; AMIDOTRANSFERASE HIS7; COMPND 6 EC: 2.4.2.-; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: PROTEIN RESIDUE 143, NUMBER 83, IS CYS COVALENTLY COMPND 9 MODIFIED BY ACIVICIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: HIS7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PHIS7-T7 KEYWDS SUBSTRATE CHANNELING, AMIDOTRANSFERASE, TIM-BARREL AS A SUBSTRATE KEYWDS 2 TUNNEL, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.N.CHAUDHURI,J.L.SMITH,V.J.DAVISSON,R.S.MYERS,S.C.LANGE,S.V.CHITTUR REVDAT 3 22-JUN-11 1JVN 1 REMARK REVDAT 2 24-FEB-09 1JVN 1 VERSN REVDAT 1 12-OCT-01 1JVN 0 JRNL AUTH B.N.CHAUDHURI,S.C.LANGE,R.S.MYERS,S.V.CHITTUR,V.J.DAVISSON, JRNL AUTH 2 J.L.SMITH JRNL TITL CRYSTAL STRUCTURE OF IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE: JRNL TITL 2 A TUNNEL THROUGH A (BETA/ALPHA)8 BARREL JOINS TWO ACTIVE JRNL TITL 3 SITES. JRNL REF STRUCTURE V. 9 987 2001 JRNL REFN ISSN 0969-2126 JRNL PMID 11591353 JRNL DOI 10.1016/S0969-2126(01)00661-X REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : CNS DICTIONARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1768716.760 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 73662 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3686 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9720 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 497 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8370 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 412 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.96000 REMARK 3 B22 (A**2) : -5.22000 REMARK 3 B33 (A**2) : 1.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.25 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.40 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.00 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.200 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.910 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.920 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.870 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 32.93 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REPMOD.PARAM REMARK 3 PARAMETER FILE 2 : CIS_PEPTIDE.PARAM REMARK 3 PARAMETER FILE 3 : WATER.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : POP.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN_MOD.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : POP.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JVN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-SEP-01. REMARK 100 THE RCSB ID CODE IS RCSB014236. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-01; 17-NOV-01 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 17-ID; 14-BM-D REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000; 0.9796, 0.9795, 0.9537 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : SI(111) DOUBLE-CRYSTAL; BENT REMARK 200 CYLINDRICAL SI-MIRROR (RH REMARK 200 COATING), SI(111) DOUBLE-CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73741 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.300 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 13.10 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28 % PEG MME 5000, 0.2 M AMMONIUM REMARK 280 SULFATE, 0.1 M MES BUFFER, PH 6.5, VAPOR DIFFUSION, HANGING DROP REMARK 280 AT 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 49.18500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.34000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.08650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.34000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.18500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.08650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER IN SOLUTION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 261A REMARK 465 TYR A 261B REMARK 465 ASP A 261C REMARK 465 VAL A 261D REMARK 465 ARG A 261E REMARK 465 GLU A 261F REMARK 465 LYS A 261G REMARK 465 SER A 261H REMARK 465 ASP A 261I REMARK 465 GLY A 261J REMARK 465 LYS A 261K REMARK 465 GLY A 261L REMARK 465 VAL A 261M REMARK 465 ARG A 261N REMARK 465 ASN A 261O REMARK 465 SER A 301 REMARK 465 PHE A 302 REMARK 465 ARG A 303 REMARK 465 GLN B 261A REMARK 465 TYR B 261B REMARK 465 ASP B 261C REMARK 465 VAL B 261D REMARK 465 ARG B 261E REMARK 465 GLU B 261F REMARK 465 LYS B 261G REMARK 465 SER B 261H REMARK 465 ASP B 261I REMARK 465 GLY B 261J REMARK 465 LYS B 261K REMARK 465 GLY B 261L REMARK 465 VAL B 261M REMARK 465 ARG B 261N REMARK 465 ASN B 261O REMARK 465 SER B 301 REMARK 465 PHE B 302 REMARK 465 ARG B 303 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A -2 -4.39 -169.18 REMARK 500 LEU A 47 76.30 -113.83 REMARK 500 143 A 83 -114.44 64.90 REMARK 500 ASN A 185 -114.40 53.76 REMARK 500 SER A 213 78.62 -119.01 REMARK 500 LYS A 259 -29.86 -34.80 REMARK 500 PHE A 324 52.90 -96.05 REMARK 500 ASP A 472 -8.43 -57.77 REMARK 500 SER A 500 122.13 70.35 REMARK 500 ALA A 523 -86.92 -131.14 REMARK 500 SER B -2 -1.56 -170.98 REMARK 500 LEU B 47 75.68 -113.59 REMARK 500 143 B 83 -112.20 63.01 REMARK 500 ASN B 185 -109.96 51.04 REMARK 500 PHE B 324 46.86 -95.99 REMARK 500 SER B 500 120.32 73.76 REMARK 500 ALA B 523 -87.13 -128.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH A 1090 REMARK 615 HOH A 1106 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 902 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A -1 N REMARK 620 2 HIS A -1 ND1 94.8 REMARK 620 3 GLY A -3 N 171.2 93.2 REMARK 620 4 SER A -2 N 85.4 176.8 86.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 901 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B -3 N REMARK 620 2 SER B -2 N 86.2 REMARK 620 3 HIS B -1 N 166.4 80.9 REMARK 620 4 HIS B -1 ND1 98.5 174.8 94.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP B 999 DBREF 1JVN A 1 552 UNP P33734 HIS5_YEAST 1 552 DBREF 1JVN B 1 552 UNP P33734 HIS5_YEAST 1 552 SEQADV 1JVN GLY A -3 UNP P33734 EXPRESSION TAG SEQADV 1JVN SER A -2 UNP P33734 EXPRESSION TAG SEQADV 1JVN HIS A -1 UNP P33734 EXPRESSION TAG SEQADV 1JVN 143 A 83 UNP P33734 CYS 83 MODIFIED RESIDUE SEQADV 1JVN GLY B -3 UNP P33734 EXPRESSION TAG SEQADV 1JVN SER B -2 UNP P33734 EXPRESSION TAG SEQADV 1JVN HIS B -1 UNP P33734 EXPRESSION TAG SEQADV 1JVN 143 B 83 UNP P33734 CYS 83 MODIFIED RESIDUE SEQRES 1 A 555 GLY SER HIS MET PRO VAL VAL HIS VAL ILE ASP VAL GLU SEQRES 2 A 555 SER GLY ASN LEU GLN SER LEU THR ASN ALA ILE GLU HIS SEQRES 3 A 555 LEU GLY TYR GLU VAL GLN LEU VAL LYS SER PRO LYS ASP SEQRES 4 A 555 PHE ASN ILE SER GLY THR SER ARG LEU ILE LEU PRO GLY SEQRES 5 A 555 VAL GLY ASN TYR GLY HIS PHE VAL ASP ASN LEU PHE ASN SEQRES 6 A 555 ARG GLY PHE GLU LYS PRO ILE ARG GLU TYR ILE GLU SER SEQRES 7 A 555 GLY LYS PRO ILE MET GLY ILE 143 VAL GLY LEU GLN ALA SEQRES 8 A 555 LEU PHE ALA GLY SER VAL GLU SER PRO LYS SER THR GLY SEQRES 9 A 555 LEU ASN TYR ILE ASP PHE LYS LEU SER ARG PHE ASP ASP SEQRES 10 A 555 SER GLU LYS PRO VAL PRO GLU ILE GLY TRP ASN SER CYS SEQRES 11 A 555 ILE PRO SER GLU ASN LEU PHE PHE GLY LEU ASP PRO TYR SEQRES 12 A 555 LYS ARG TYR TYR PHE VAL HIS SER PHE ALA ALA ILE LEU SEQRES 13 A 555 ASN SER GLU LYS LYS LYS ASN LEU GLU ASN ASP GLY TRP SEQRES 14 A 555 LYS ILE ALA LYS ALA LYS TYR GLY SER GLU GLU PHE ILE SEQRES 15 A 555 ALA ALA VAL ASN LYS ASN ASN ILE PHE ALA THR GLN PHE SEQRES 16 A 555 HIS PRO GLU LYS SER GLY LYS ALA GLY LEU ASN VAL ILE SEQRES 17 A 555 GLU ASN PHE LEU LYS GLN GLN SER PRO PRO ILE PRO ASN SEQRES 18 A 555 TYR SER ALA GLU GLU LYS GLU LEU LEU MET ASN ASP TYR SEQRES 19 A 555 SER ASN TYR GLY LEU THR ARG ARG ILE ILE ALA CYS LEU SEQRES 20 A 555 ASP VAL ARG THR ASN ASP GLN GLY ASP LEU VAL VAL THR SEQRES 21 A 555 LYS GLY ASP GLN TYR ASP VAL ARG GLU LYS SER ASP GLY SEQRES 22 A 555 LYS GLY VAL ARG ASN LEU GLY LYS PRO VAL GLN LEU ALA SEQRES 23 A 555 GLN LYS TYR TYR GLN GLN GLY ALA ASP GLU VAL THR PHE SEQRES 24 A 555 LEU ASN ILE THR SER PHE ARG ASP CYS PRO LEU LYS ASP SEQRES 25 A 555 THR PRO MET LEU GLU VAL LEU LYS GLN ALA ALA LYS THR SEQRES 26 A 555 VAL PHE VAL PRO LEU THR VAL GLY GLY GLY ILE LYS ASP SEQRES 27 A 555 ILE VAL ASP VAL ASP GLY THR LYS ILE PRO ALA LEU GLU SEQRES 28 A 555 VAL ALA SER LEU TYR PHE ARG SER GLY ALA ASP LYS VAL SEQRES 29 A 555 SER ILE GLY THR ASP ALA VAL TYR ALA ALA GLU LYS TYR SEQRES 30 A 555 TYR GLU LEU GLY ASN ARG GLY ASP GLY THR SER PRO ILE SEQRES 31 A 555 GLU THR ILE SER LYS ALA TYR GLY ALA GLN ALA VAL VAL SEQRES 32 A 555 ILE SER VAL ASP PRO LYS ARG VAL TYR VAL ASN SER GLN SEQRES 33 A 555 ALA ASP THR LYS ASN LYS VAL PHE GLU THR GLU TYR PRO SEQRES 34 A 555 GLY PRO ASN GLY GLU LYS TYR CYS TRP TYR GLN CYS THR SEQRES 35 A 555 ILE LYS GLY GLY ARG GLU SER ARG ASP LEU GLY VAL TRP SEQRES 36 A 555 GLU LEU THR ARG ALA CYS GLU ALA LEU GLY ALA GLY GLU SEQRES 37 A 555 ILE LEU LEU ASN CYS ILE ASP LYS ASP GLY SER ASN SER SEQRES 38 A 555 GLY TYR ASP LEU GLU LEU ILE GLU HIS VAL LYS ASP ALA SEQRES 39 A 555 VAL LYS ILE PRO VAL ILE ALA SER SER GLY ALA GLY VAL SEQRES 40 A 555 PRO GLU HIS PHE GLU GLU ALA PHE LEU LYS THR ARG ALA SEQRES 41 A 555 ASP ALA CYS LEU GLY ALA GLY MET PHE HIS ARG GLY GLU SEQRES 42 A 555 PHE THR VAL ASN ASP VAL LYS GLU TYR LEU LEU GLU HIS SEQRES 43 A 555 GLY LEU LYS VAL ARG MET ASP GLU GLU SEQRES 1 B 555 GLY SER HIS MET PRO VAL VAL HIS VAL ILE ASP VAL GLU SEQRES 2 B 555 SER GLY ASN LEU GLN SER LEU THR ASN ALA ILE GLU HIS SEQRES 3 B 555 LEU GLY TYR GLU VAL GLN LEU VAL LYS SER PRO LYS ASP SEQRES 4 B 555 PHE ASN ILE SER GLY THR SER ARG LEU ILE LEU PRO GLY SEQRES 5 B 555 VAL GLY ASN TYR GLY HIS PHE VAL ASP ASN LEU PHE ASN SEQRES 6 B 555 ARG GLY PHE GLU LYS PRO ILE ARG GLU TYR ILE GLU SER SEQRES 7 B 555 GLY LYS PRO ILE MET GLY ILE 143 VAL GLY LEU GLN ALA SEQRES 8 B 555 LEU PHE ALA GLY SER VAL GLU SER PRO LYS SER THR GLY SEQRES 9 B 555 LEU ASN TYR ILE ASP PHE LYS LEU SER ARG PHE ASP ASP SEQRES 10 B 555 SER GLU LYS PRO VAL PRO GLU ILE GLY TRP ASN SER CYS SEQRES 11 B 555 ILE PRO SER GLU ASN LEU PHE PHE GLY LEU ASP PRO TYR SEQRES 12 B 555 LYS ARG TYR TYR PHE VAL HIS SER PHE ALA ALA ILE LEU SEQRES 13 B 555 ASN SER GLU LYS LYS LYS ASN LEU GLU ASN ASP GLY TRP SEQRES 14 B 555 LYS ILE ALA LYS ALA LYS TYR GLY SER GLU GLU PHE ILE SEQRES 15 B 555 ALA ALA VAL ASN LYS ASN ASN ILE PHE ALA THR GLN PHE SEQRES 16 B 555 HIS PRO GLU LYS SER GLY LYS ALA GLY LEU ASN VAL ILE SEQRES 17 B 555 GLU ASN PHE LEU LYS GLN GLN SER PRO PRO ILE PRO ASN SEQRES 18 B 555 TYR SER ALA GLU GLU LYS GLU LEU LEU MET ASN ASP TYR SEQRES 19 B 555 SER ASN TYR GLY LEU THR ARG ARG ILE ILE ALA CYS LEU SEQRES 20 B 555 ASP VAL ARG THR ASN ASP GLN GLY ASP LEU VAL VAL THR SEQRES 21 B 555 LYS GLY ASP GLN TYR ASP VAL ARG GLU LYS SER ASP GLY SEQRES 22 B 555 LYS GLY VAL ARG ASN LEU GLY LYS PRO VAL GLN LEU ALA SEQRES 23 B 555 GLN LYS TYR TYR GLN GLN GLY ALA ASP GLU VAL THR PHE SEQRES 24 B 555 LEU ASN ILE THR SER PHE ARG ASP CYS PRO LEU LYS ASP SEQRES 25 B 555 THR PRO MET LEU GLU VAL LEU LYS GLN ALA ALA LYS THR SEQRES 26 B 555 VAL PHE VAL PRO LEU THR VAL GLY GLY GLY ILE LYS ASP SEQRES 27 B 555 ILE VAL ASP VAL ASP GLY THR LYS ILE PRO ALA LEU GLU SEQRES 28 B 555 VAL ALA SER LEU TYR PHE ARG SER GLY ALA ASP LYS VAL SEQRES 29 B 555 SER ILE GLY THR ASP ALA VAL TYR ALA ALA GLU LYS TYR SEQRES 30 B 555 TYR GLU LEU GLY ASN ARG GLY ASP GLY THR SER PRO ILE SEQRES 31 B 555 GLU THR ILE SER LYS ALA TYR GLY ALA GLN ALA VAL VAL SEQRES 32 B 555 ILE SER VAL ASP PRO LYS ARG VAL TYR VAL ASN SER GLN SEQRES 33 B 555 ALA ASP THR LYS ASN LYS VAL PHE GLU THR GLU TYR PRO SEQRES 34 B 555 GLY PRO ASN GLY GLU LYS TYR CYS TRP TYR GLN CYS THR SEQRES 35 B 555 ILE LYS GLY GLY ARG GLU SER ARG ASP LEU GLY VAL TRP SEQRES 36 B 555 GLU LEU THR ARG ALA CYS GLU ALA LEU GLY ALA GLY GLU SEQRES 37 B 555 ILE LEU LEU ASN CYS ILE ASP LYS ASP GLY SER ASN SER SEQRES 38 B 555 GLY TYR ASP LEU GLU LEU ILE GLU HIS VAL LYS ASP ALA SEQRES 39 B 555 VAL LYS ILE PRO VAL ILE ALA SER SER GLY ALA GLY VAL SEQRES 40 B 555 PRO GLU HIS PHE GLU GLU ALA PHE LEU LYS THR ARG ALA SEQRES 41 B 555 ASP ALA CYS LEU GLY ALA GLY MET PHE HIS ARG GLY GLU SEQRES 42 B 555 PHE THR VAL ASN ASP VAL LYS GLU TYR LEU LEU GLU HIS SEQRES 43 B 555 GLY LEU LYS VAL ARG MET ASP GLU GLU MODRES 1JVN 143 A 83 CYS MODRES 1JVN 143 B 83 CYS HET 143 A 83 16 HET 143 B 83 16 HET NI B 901 1 HET NI A 902 1 HET SO4 A 801 5 HET SO4 A 802 5 HET SO4 B 803 5 HET SO4 B 804 5 HET SO4 A 806 5 HET POP B 999 9 HETNAM 143 S-2,3-DIHYDRO-5-GLYCIN-2-YL-ISOXAZOL-3-YL-CYSTEINE HETNAM NI NICKEL (II) ION HETNAM SO4 SULFATE ION HETNAM POP PYROPHOSPHATE 2- HETSYN 143 2-AMINO-3-[5-(AMINO-CARBOXY-METHYL)-2,3-DIHYDRO- HETSYN 2 143 ISOXAZOL-3-YLSULFANYL]-PROPIONIC ACID FORMUL 1 143 2(C8 H13 N3 O5 S) FORMUL 3 NI 2(NI 2+) FORMUL 5 SO4 5(O4 S 2-) FORMUL 10 POP H2 O7 P2 2- FORMUL 11 HOH *412(H2 O) HELIX 1 1 LEU A 14 LEU A 24 1 11 HELIX 2 2 SER A 33 PHE A 37 5 5 HELIX 3 3 ASN A 52 ARG A 63 1 12 HELIX 4 4 PHE A 65 SER A 75 1 11 HELIX 5 5 LEU A 86 ALA A 88 5 3 HELIX 6 6 ASN A 154 ASP A 164 1 11 HELIX 7 7 PRO A 194 LYS A 196 5 3 HELIX 8 8 SER A 197 LYS A 210 1 14 HELIX 9 9 SER A 220 MET A 228 1 9 HELIX 10 10 TYR A 231 LEU A 236 5 6 HELIX 11 11 LEU A 276 GLN A 289 1 14 HELIX 12 12 PRO A 306 ASP A 309 5 4 HELIX 13 13 THR A 310 ALA A 320 1 11 HELIX 14 14 PRO A 345 GLY A 357 1 13 HELIX 15 15 GLY A 364 LEU A 377 1 14 HELIX 16 16 SER A 385 GLY A 395 1 11 HELIX 17 17 SER A 412 THR A 416 5 5 HELIX 18 18 VAL A 451 LEU A 461 1 11 HELIX 19 19 CYS A 470 ASP A 474 5 5 HELIX 20 20 ASP A 481 VAL A 492 1 12 HELIX 21 21 VAL A 504 THR A 515 1 12 HELIX 22 22 ALA A 523 ARG A 528 1 6 HELIX 23 23 THR A 532 HIS A 543 1 12 HELIX 24 24 LEU B 14 LEU B 24 1 11 HELIX 25 25 SER B 33 PHE B 37 5 5 HELIX 26 26 ASN B 52 ARG B 63 1 12 HELIX 27 27 PHE B 65 SER B 75 1 11 HELIX 28 28 LEU B 86 ALA B 88 5 3 HELIX 29 29 ASN B 154 ASP B 164 1 11 HELIX 30 30 HIS B 193 LYS B 196 5 4 HELIX 31 31 SER B 197 LYS B 210 1 14 HELIX 32 32 SER B 220 MET B 228 1 9 HELIX 33 33 TYR B 231 LEU B 236 5 6 HELIX 34 34 LEU B 276 GLN B 289 1 14 HELIX 35 35 PRO B 306 ASP B 309 5 4 HELIX 36 36 THR B 310 ALA B 320 1 11 HELIX 37 37 PRO B 345 SER B 356 1 12 HELIX 38 38 GLY B 364 LEU B 377 1 14 HELIX 39 39 SER B 385 GLY B 395 1 11 HELIX 40 40 SER B 412 THR B 416 5 5 HELIX 41 41 VAL B 451 GLY B 462 1 12 HELIX 42 42 CYS B 470 ASP B 474 5 5 HELIX 43 43 ASP B 481 VAL B 492 1 12 HELIX 44 44 VAL B 504 THR B 515 1 12 HELIX 45 45 ALA B 523 ARG B 528 1 6 HELIX 46 46 THR B 532 GLU B 542 1 11 SHEET 1 A 7 GLU A 27 VAL A 31 0 SHEET 2 A 7 VAL A 3 ILE A 7 1 N VAL A 4 O GLU A 27 SHEET 3 A 7 LEU A 45 PRO A 48 1 N ILE A 46 O HIS A 5 SHEET 4 A 7 ILE A 79 ILE A 82 1 O MET A 80 N LEU A 47 SHEET 5 A 7 ILE A 187 THR A 190 1 N PHE A 188 O ILE A 79 SHEET 6 A 7 GLU A 176 LYS A 184 -1 N VAL A 182 O ALA A 189 SHEET 7 A 7 LYS A 167 TYR A 173 -1 N LYS A 167 O ASN A 183 SHEET 1 B 3 PHE A 90 SER A 93 0 SHEET 2 B 3 ILE A 105 ARG A 111 1 O ILE A 105 N ALA A 91 SHEET 3 B 3 PHE A 149 ALA A 150 -1 N ALA A 150 O SER A 110 SHEET 1 C 2 GLU A 121 ASN A 125 0 SHEET 2 C 2 TYR A 143 HIS A 147 -1 N TYR A 143 O ASN A 125 LINK C ILE A 82 N 143 A 83 1555 1555 1.36 LINK C 143 A 83 N VAL A 84 1555 1555 1.39 LINK NI NI A 902 N HIS A -1 1555 1555 2.01 LINK NI NI A 902 ND1 HIS A -1 1555 1555 1.94 LINK NI NI A 902 N GLY A -3 1555 1555 2.09 LINK NI NI A 902 N SER A -2 1555 1555 1.84 LINK C ILE B 82 N 143 B 83 1555 1555 1.37 LINK C 143 B 83 N VAL B 84 1555 1555 1.37 LINK NI NI B 901 N GLY B -3 1555 1555 2.06 LINK NI NI B 901 N SER B -2 1555 1555 1.89 LINK NI NI B 901 N HIS B -1 1555 1555 2.08 LINK NI NI B 901 ND1 HIS B -1 1555 1555 1.93 CISPEP 1 VAL A 119 PRO A 120 0 2.62 CISPEP 2 VAL B 119 PRO B 120 0 1.71 SITE 1 AC1 4 HIS B -1 SER B -2 GLY B -3 MET B 1 SITE 1 AC2 5 HIS A -1 GLY A -3 SER A -2 MET A 1 SITE 2 AC2 5 TYR B 425 SITE 1 AC3 4 GLY A 331 GLY A 364 THR A 365 HOH A1010 SITE 1 AC4 7 GLY A 475 ASN A 477 GLY A 524 ARG A 528 SITE 2 AC4 7 HOH A 974 HOH A1073 HOH A1103 SITE 1 AC5 4 LYS B 158 LYS B 170 LYS B 343 HOH B1136 SITE 1 AC6 6 GLY B 331 GLY B 364 THR B 365 HOH B1012 SITE 2 AC6 6 HOH B1132 HOH B1172 SITE 1 AC7 4 SER A 130 GLU A 131 ASN A 132 LYS B 493 SITE 1 AC8 10 ASP B 474 GLY B 475 ASN B 477 GLY B 501 SITE 2 AC8 10 GLY B 524 MET B 525 ARG B 528 HOH B1013 SITE 3 AC8 10 HOH B1052 HOH B1113 CRYST1 98.370 112.173 116.680 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010166 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008915 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008570 0.00000