data_1JWC # _entry.id 1JWC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1JWC pdb_00001jwc 10.2210/pdb1jwc/pdb RCSB RCSB014260 ? ? WWPDB D_1000014260 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1JU7 _pdbx_database_related.details '1JU7 is the Overlay of 10 converged structures from which this average structure was produced.' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1JWC _pdbx_database_status.recvd_initial_deposition_date 2001-09-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dejong, E.S.' 1 'Marzluff, W.F.' 2 'Nikonowicz, E.P.' 3 # _citation.id primary _citation.title 'NMR structure and dynamics of the RNA-binding site for the histone mRNA stem-loop binding protein.' _citation.journal_abbrev RNA _citation.journal_volume 8 _citation.page_first 83 _citation.page_last 96 _citation.year 2002 _citation.journal_id_ASTM RNARFU _citation.country UK _citation.journal_id_ISSN 1355-8382 _citation.journal_id_CSD 2122 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11871662 _citation.pdbx_database_id_DOI 10.1017/S1355838202013869 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'DeJong, E.S.' 1 ? primary 'Marzluff, W.F.' 2 ? primary 'Nikonowicz, E.P.' 3 ? # _cell.entry_id 1JWC _cell.length_a ? _cell.length_b ? _cell.length_c ? _cell.angle_alpha ? _cell.angle_beta ? _cell.angle_gamma ? _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description "5'-R(*GP*GP*CP*CP*AP*AP*AP*GP*GP*CP*CP*CP*UP*UP*UP*UP*CP*AP*GP*GP*GP*CP*CP*AP*CP*CP*CP*A)-3'" _entity.formula_weight 8928.382 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ;HISTONE MRNA 3' STEM LOOP ; # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCCAAAGGCCCUUUUCAGGGCCACCCA _entity_poly.pdbx_seq_one_letter_code_can GGCCAAAGGCCCUUUUCAGGGCCACCCA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 C n 1 5 A n 1 6 A n 1 7 A n 1 8 G n 1 9 G n 1 10 C n 1 11 C n 1 12 C n 1 13 U n 1 14 U n 1 15 U n 1 16 U n 1 17 C n 1 18 A n 1 19 G n 1 20 G n 1 21 G n 1 22 C n 1 23 C n 1 24 A n 1 25 C n 1 26 C n 1 27 C n 1 28 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;THIS SEQUENCE OCCURS NATURALLY AT THE 3' END OF THE REPLICATION-DEPENDENT HISTONE MRNAS OF VERTEBRATES. THIS SEQUENCE CORRESPONDS TO THE MOUSE H4-12 GENE. ; # _struct_ref.id 1 _struct_ref.db_code X13235 _struct_ref.db_name GB _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession 51308 _struct_ref.pdbx_align_begin 573 _struct_ref.pdbx_seq_one_letter_code AACAAAAGGCCCUUUUCAGGGCCACCCA _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1JWC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 28 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 51308 _struct_ref_seq.db_align_beg 573 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 600 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -6 _struct_ref_seq.pdbx_auth_seq_align_end 21 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1JWC G A 1 ? GB 51308 A 573 'SEE REMARK 999' -6 1 1 1JWC G A 2 ? GB 51308 A 574 'SEE REMARK 999' -5 2 1 1JWC C A 4 ? GB 51308 A 576 'SEE REMARK 999' -3 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 noesy 2 1 1 3D_13C-separated_NOESY 3 2 2 3D_15N-separated_NOESY 4 2 1 DQF-COSY 5 2 1 HetCor # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 301 ambient 6.8 '100 mM' ? K 2 278 ambient 6.8 '100 mM' ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '2.3 MM U-13C; 20 MM KPI, 20 MM KCL, 0.02 MM EDTA' '100% D2O' 2 '2.5 MM 15N-labeled; 20 MM KPI, 20 MM KCL, 0.02 MM EDTA' '100% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AMX _pdbx_nmr_spectrometer.field_strength 500 # _pdbx_nmr_refine.entry_id 1JWC _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;CALCULATIONS WERE PERFORMED USING 232 CONFORMATIONALLY RESTRICTIVE NOE DERIVED DISTANCE CONSTRAINTS AND 55 BACKBONE AND 15 RIBOSE TORSION ANGLE CONSTRAINTS. BASE PAIR CONSTRAINTS WERE INTRODUCED FOR SIX BASE PAIRS USING HEAVY ATOM-HEAVY ATOM CONSTRAINTS. COORDINATES ARE FOR THE HAIRPIN DOMAIN ONLY. 5' FLANKING (GGCCAAA) AND 3' FLANKING (ACCCA) COORDINATES ARE NOT INCLUDED WITH THIS DEPOSITION. FEW CONSTRAINTS WERE OBTAINED FOR THESE VERY DYNAMIC REGIONS AND ALTHOUGH THEY WERE INCLUDED AS PART OF THE STRUCTURE CALCULATION, THEIR CONFORMATIONS APPEAR TO BE RANDOMLY DISTRIBUTED. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1JWC _pdbx_nmr_details.text 'THIS STRUCTURE WAS DETERMINED USING A VARIETY OF 2D AND 3D HOMO- AND HETERO-NUCLEAR NMR METHODS' # _pdbx_nmr_ensemble.entry_id 1JWC _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria ? # _pdbx_nmr_representative.entry_id 1JWC _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'minimized average structure' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal X-PLOR 3.851 refinement 'Brunger, A.' 1 Felix 980 processing Biosym 2 # _exptl.entry_id 1JWC _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description 'THIS STRUCTURE WAS DETERMINED USING A VARIETY OF 2D AND 3D HOMO- AND HETERO-NUCLEAR NMR METHODS.' # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1JWC _struct.title 'NMR SOLUTION STRUCTURE OF THE RNA HAIRPIN BINDING SITE FOR THE HISTONE STEM-LOOP BINDING PROTEIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 1JWC _struct_keywords.pdbx_keywords RNA _struct_keywords.text ;HAIRPIN, TETRALOOP, 3' STACK, RNA ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 23 N3 ? ? A G 1 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 23 O2 ? ? A G 1 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 23 N4 ? ? A G 1 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 22 N3 ? ? A G 2 A C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 22 O2 ? ? A G 2 A C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 22 N4 ? ? A G 2 A C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 21 N1 ? ? A C 3 A G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 21 O6 ? ? A C 3 A G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 21 N2 ? ? A C 3 A G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 20 N2 ? ? A C 4 A G 13 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog11 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 19 N1 ? ? A C 5 A G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 19 O6 ? ? A C 5 A G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 19 N2 ? ? A C 5 A G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 13 N3 ? ? ? 1_555 A A 18 N1 ? ? A U 6 A A 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 13 O4 ? ? ? 1_555 A A 18 N6 ? ? A U 6 A A 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1JWC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1JWC _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 -6 ? ? ? A . n A 1 2 G 2 -5 ? ? ? A . n A 1 3 C 3 -4 ? ? ? A . n A 1 4 C 4 -3 ? ? ? A . n A 1 5 A 5 -2 ? ? ? A . n A 1 6 A 6 -1 ? ? ? A . n A 1 7 A 7 0 ? ? ? A . n A 1 8 G 8 1 1 G G A . n A 1 9 G 9 2 2 G G A . n A 1 10 C 10 3 3 C C A . n A 1 11 C 11 4 4 C C A . n A 1 12 C 12 5 5 C C A . n A 1 13 U 13 6 6 U U A . n A 1 14 U 14 7 7 U U A . n A 1 15 U 15 8 8 U U A . n A 1 16 U 16 9 9 U U A . n A 1 17 C 17 10 10 C C A . n A 1 18 A 18 11 11 A A A . n A 1 19 G 19 12 12 G G A . n A 1 20 G 20 13 13 G G A . n A 1 21 G 21 14 14 G G A . n A 1 22 C 22 15 15 C C A . n A 1 23 C 23 16 16 C C A . n A 1 24 A 24 17 ? ? ? A . n A 1 25 C 25 18 ? ? ? A . n A 1 26 C 26 19 ? ? ? A . n A 1 27 C 27 20 ? ? ? A . n A 1 28 A 28 21 ? ? ? A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-03-20 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' # _software.name X-PLOR _software.classification refinement _software.version 3.851 _software.citation_id ? _software.pdbx_ordinal 1 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N7 A G 1 ? ? C8 A G 1 ? ? N9 A G 1 ? ? 117.61 113.10 4.51 0.50 N 2 1 C8 A G 1 ? ? N9 A G 1 ? ? C4 A G 1 ? ? 103.54 106.40 -2.86 0.40 N 3 1 N7 A G 2 ? ? C8 A G 2 ? ? N9 A G 2 ? ? 117.60 113.10 4.50 0.50 N 4 1 C8 A G 2 ? ? N9 A G 2 ? ? C4 A G 2 ? ? 103.55 106.40 -2.85 0.40 N 5 1 N7 A A 11 ? ? C8 A A 11 ? ? N9 A A 11 ? ? 117.51 113.80 3.71 0.50 N 6 1 C8 A A 11 ? ? N9 A A 11 ? ? C4 A A 11 ? ? 103.36 105.80 -2.44 0.40 N 7 1 N7 A G 12 ? ? C8 A G 12 ? ? N9 A G 12 ? ? 117.59 113.10 4.49 0.50 N 8 1 C8 A G 12 ? ? N9 A G 12 ? ? C4 A G 12 ? ? 103.54 106.40 -2.86 0.40 N 9 1 N7 A G 13 ? ? C8 A G 13 ? ? N9 A G 13 ? ? 117.66 113.10 4.56 0.50 N 10 1 C8 A G 13 ? ? N9 A G 13 ? ? C4 A G 13 ? ? 103.50 106.40 -2.90 0.40 N 11 1 N7 A G 14 ? ? C8 A G 14 ? ? N9 A G 14 ? ? 117.64 113.10 4.54 0.50 N 12 1 C8 A G 14 ? ? N9 A G 14 ? ? C4 A G 14 ? ? 103.49 106.40 -2.91 0.40 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A G 1 ? P ? A G 8 P 2 1 Y 1 A G 1 ? OP1 ? A G 8 OP1 3 1 Y 1 A G 1 ? OP2 ? A G 8 OP2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A G -6 ? A G 1 2 1 Y 1 A G -5 ? A G 2 3 1 Y 1 A C -4 ? A C 3 4 1 Y 1 A C -3 ? A C 4 5 1 Y 1 A A -2 ? A A 5 6 1 Y 1 A A -1 ? A A 6 7 1 Y 1 A A 0 ? A A 7 8 1 Y 1 A A 17 ? A A 24 9 1 Y 1 A C 18 ? A C 25 10 1 Y 1 A C 19 ? A C 26 11 1 Y 1 A C 20 ? A C 27 12 1 Y 1 A A 21 ? A A 28 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1JWC 'double helix' 1JWC 'hairpin loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 8 1_555 A C 23 1_555 -0.152 0.295 1.242 15.759 0.174 -4.747 1 A_G1:C16_A A 1 ? A 16 ? 19 1 1 A G 9 1_555 A C 22 1_555 -0.121 0.484 -0.307 -20.174 7.041 -2.202 2 A_G2:C15_A A 2 ? A 15 ? 19 1 1 A C 10 1_555 A G 21 1_555 -0.078 0.364 -0.586 -6.309 -1.163 -3.229 3 A_C3:G14_A A 3 ? A 14 ? 19 1 1 A C 11 1_555 A G 20 1_555 0.178 0.450 -0.580 5.957 -9.975 0.581 4 A_C4:G13_A A 4 ? A 13 ? ? ? 1 A C 12 1_555 A G 19 1_555 0.155 0.403 -0.547 21.552 -18.931 -2.597 5 A_C5:G12_A A 5 ? A 12 ? 19 1 1 A U 13 1_555 A A 18 1_555 -0.481 0.296 0.091 0.665 -27.971 -2.657 6 A_U6:A11_A A 6 ? A 11 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 8 1_555 A C 23 1_555 A G 9 1_555 A C 22 1_555 1.200 -1.118 6.201 7.636 28.795 27.878 -7.500 -0.169 3.751 46.237 -12.261 40.583 1 AA_G1G2:C15C16_AA A 1 ? A 16 ? A 2 ? A 15 ? 1 A G 9 1_555 A C 22 1_555 A C 10 1_555 A G 21 1_555 0.022 -1.222 3.793 1.991 22.473 15.048 -8.162 0.444 1.115 56.495 -5.006 27.065 2 AA_G2C3:G14C15_AA A 2 ? A 15 ? A 3 ? A 14 ? 1 A C 10 1_555 A G 21 1_555 A C 11 1_555 A G 20 1_555 0.701 -1.627 3.524 0.280 15.803 20.551 -7.656 -1.493 1.832 37.882 -0.672 25.874 3 AA_C3C4:G13G14_AA A 3 ? A 14 ? A 4 ? A 13 ? 1 A C 11 1_555 A G 20 1_555 A C 12 1_555 A G 19 1_555 -0.708 -1.464 3.559 -0.711 8.438 24.325 -5.697 1.386 2.913 19.292 1.626 25.735 4 AA_C4C5:G12G13_AA A 4 ? A 13 ? A 5 ? A 12 ? 1 A C 12 1_555 A G 19 1_555 A U 13 1_555 A A 18 1_555 0.289 -2.206 3.894 -5.102 26.177 26.966 -6.563 -1.062 1.267 44.633 8.698 37.752 5 AA_C5U6:A11G12_AA A 5 ? A 12 ? A 6 ? A 11 ? #