HEADER SIGNALING PROTEIN/PEPTIDE INHIBITOR 13-SEP-01 1JYQ TITLE XRAY STRUCTURE OF GRB2 SH2 DOMAIN COMPLEXED WITH A HIGHLY AFFINE TITLE 2 PHOSPHO PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SH2 DOMAIN; COMPND 5 SYNONYM: GRB2 ADAPTER PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: MAZ-PY-(ALPHA ME)PY-N-NH2 PEPTIDE INHIBITOR; COMPND 9 CHAIN: L, H; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 OTHER_DETAILS: THIS PEPTIDE WAS CHEMICALLY SYNTHESIZED KEYWDS RECEPTOR BINDING, REGULATORY, SIGNALING PROTEIN-SIGNALING PROTEIN KEYWDS 2 INHIBITOR, SIGNALING PROTEIN-PEPTIDE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.NIOCHE,W.-Q.LIU,I.BROUTIN,F.CHARBONNIER,M.-T.LATREILLE,M.VIDAL, AUTHOR 2 B.ROQUES,C.GARBAY,A.DUCRUIX REVDAT 7 20-NOV-24 1JYQ 1 REMARK REVDAT 6 10-JUL-24 1JYQ 1 COMPND SEQADV FORMUL LINK REVDAT 5 04-APR-18 1JYQ 1 REMARK REVDAT 4 13-JUL-11 1JYQ 1 VERSN REVDAT 3 24-FEB-09 1JYQ 1 VERSN REVDAT 2 01-APR-03 1JYQ 1 JRNL REVDAT 1 13-MAR-02 1JYQ 0 JRNL AUTH P.NIOCHE,W.Q.LIU,I.BROUTIN,F.CHARBONNIER,M.T.LATREILLE, JRNL AUTH 2 M.VIDAL,B.ROQUES,C.GARBAY,A.DUCRUIX JRNL TITL CRYSTAL STRUCTURES OF THE SH2 DOMAIN OF GRB2: HIGHLIGHT ON JRNL TITL 2 THE BINDING OF A NEW HIGH-AFFINITY INHIBITOR. JRNL REF J.MOL.BIOL. V. 315 1167 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 11827484 JRNL DOI 10.1006/JMBI.2001.5299 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1807484.300 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 13295 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.400 REMARK 3 FREE R VALUE TEST SET COUNT : 987 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.12 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1948 REMARK 3 BIN R VALUE (WORKING SET) : 0.1380 REMARK 3 BIN FREE R VALUE : 0.2050 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 161 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1672 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 166 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM SIGMAA (A) : -0.0 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.03 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.027 REMARK 3 BOND ANGLES (DEGREES) : 2.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.090 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.550 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.260 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.300 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.200 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : BOND-MAZ-PTR.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : BOND-MAZ-PTR.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JYQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-SEP-01. REMARK 100 THE DEPOSITION ID IS D_1000014342. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13295 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM PHOSPHATE, PEG400, PH 6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.01533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 118.03067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 88.52300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 147.53833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 29.50767 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.01533 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 118.03067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 147.53833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 88.52300 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 29.50767 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -30.49950 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 52.82668 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 29.50767 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE MAZ-PY-(ALPHA ME)PY-N-NH2 IS PEPTIDE-LIKE, A MEMBER OF REMARK 400 INHIBITOR CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: MAZ-PY-(ALPHA ME)PY-N-NH2 REMARK 400 CHAIN: L, H REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 67 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 133 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 121 -85.53 -129.32 REMARK 500 TRP B 121 -75.38 -127.59 REMARK 500 VAL B 122 -40.96 -133.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN L OF MAZ-PY-(ALPHA ME)PY REMARK 800 -N-NH2 PEPTIDE INHIBITOR REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN H OF MAZ-PY-(ALPHA ME)PY REMARK 800 -N-NH2 PEPTIDE INHIBITOR REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JYR RELATED DB: PDB REMARK 900 XRAY STRUCTURE OF GRB2 SH2 DOMAIN COMPLEXED WITH A PHOSPHORYLATED REMARK 900 PEPTIDE REMARK 900 RELATED ID: 1JYU RELATED DB: PDB REMARK 900 XRAY STRUCTURE OF GRB2 SH2 DOMAIN DBREF 1JYQ A 60 151 UNP P29354 GRB2_HUMAN 60 151 DBREF 1JYQ B 60 151 UNP P29354 GRB2_HUMAN 60 151 DBREF 1JYQ L 200 203 PDB 1JYQ 1JYQ 200 203 DBREF 1JYQ H 200 203 PDB 1JYQ 1JYQ 200 203 SEQADV 1JYQ GLY A 56 UNP P29354 CLONING ARTIFACT SEQADV 1JYQ SER A 57 UNP P29354 CLONING ARTIFACT SEQADV 1JYQ MET A 58 UNP P29354 CLONING ARTIFACT SEQADV 1JYQ ALA A 59 UNP P29354 CLONING ARTIFACT SEQADV 1JYQ GLY B 56 UNP P29354 CLONING ARTIFACT SEQADV 1JYQ SER B 57 UNP P29354 CLONING ARTIFACT SEQADV 1JYQ MET B 58 UNP P29354 CLONING ARTIFACT SEQADV 1JYQ ALA B 59 UNP P29354 CLONING ARTIFACT SEQRES 1 A 96 GLY SER MET ALA TRP PHE PHE GLY LYS ILE PRO ARG ALA SEQRES 2 A 96 LYS ALA GLU GLU MET LEU SER LYS GLN ARG HIS ASP GLY SEQRES 3 A 96 ALA PHE LEU ILE ARG GLU SER GLU SER ALA PRO GLY ASP SEQRES 4 A 96 PHE SER LEU SER VAL LYS PHE GLY ASN ASP VAL GLN HIS SEQRES 5 A 96 PHE LYS VAL LEU ARG ASP GLY ALA GLY LYS TYR PHE LEU SEQRES 6 A 96 TRP VAL VAL LYS PHE ASN SER LEU ASN GLU LEU VAL ASP SEQRES 7 A 96 TYR HIS ARG SER THR SER VAL SER ARG ASN GLN GLN ILE SEQRES 8 A 96 PHE LEU ARG ASP ILE SEQRES 1 B 96 GLY SER MET ALA TRP PHE PHE GLY LYS ILE PRO ARG ALA SEQRES 2 B 96 LYS ALA GLU GLU MET LEU SER LYS GLN ARG HIS ASP GLY SEQRES 3 B 96 ALA PHE LEU ILE ARG GLU SER GLU SER ALA PRO GLY ASP SEQRES 4 B 96 PHE SER LEU SER VAL LYS PHE GLY ASN ASP VAL GLN HIS SEQRES 5 B 96 PHE LYS VAL LEU ARG ASP GLY ALA GLY LYS TYR PHE LEU SEQRES 6 B 96 TRP VAL VAL LYS PHE ASN SER LEU ASN GLU LEU VAL ASP SEQRES 7 B 96 TYR HIS ARG SER THR SER VAL SER ARG ASN GLN GLN ILE SEQRES 8 B 96 PHE LEU ARG ASP ILE SEQRES 1 L 4 MAZ PTR PTM ASN SEQRES 1 H 4 MAZ PTR PTM ASN MODRES 1JYQ PTR L 201 TYR O-PHOSPHOTYROSINE MODRES 1JYQ PTM L 202 TYR ALPHA-METHYL-O-PHOSPHOTYROSINE MODRES 1JYQ PTR H 201 TYR O-PHOSPHOTYROSINE MODRES 1JYQ PTM H 202 TYR ALPHA-METHYL-O-PHOSPHOTYROSINE HET MAZ L 200 11 HET PTR L 201 16 HET PTM L 202 17 HET MAZ H 200 11 HET PTR H 201 16 HET PTM H 202 17 HETNAM MAZ FORMIC ACID 3-AMINO-BENZYL ESTER HETNAM PTR O-PHOSPHOTYROSINE HETNAM PTM ALPHA-METHYL-O-PHOSPHOTYROSINE HETSYN MAZ META-AMINO BENZYLOCARBONYL HETSYN PTR PHOSPHONOTYROSINE FORMUL 3 MAZ 2(C8 H9 N O3) FORMUL 3 PTR 2(C9 H12 N O6 P) FORMUL 3 PTM 2(C10 H14 N O6 P) FORMUL 5 HOH *166(H2 O) HELIX 1 1 PRO A 66 LYS A 76 1 11 HELIX 2 2 SER A 127 HIS A 135 1 9 HELIX 3 3 PRO B 66 LYS B 76 1 11 HELIX 4 4 SER B 127 HIS B 135 1 9 SHEET 1 A 3 PHE A 83 GLU A 87 0 SHEET 2 A 3 PHE A 95 PHE A 101 -1 O SER A 96 N ARG A 86 SHEET 3 A 3 ASP A 104 LYS A 109 -1 O ASP A 104 N PHE A 101 SHEET 1 B 3 LEU A 111 ARG A 112 0 SHEET 2 B 3 TYR A 118 PHE A 119 -1 O PHE A 119 N LEU A 111 SHEET 3 B 3 LYS A 124 PHE A 125 -1 O PHE A 125 N TYR A 118 SHEET 1 C 4 ASP B 104 LYS B 109 0 SHEET 2 C 4 PHE B 95 PHE B 101 -1 N PHE B 101 O ASP B 104 SHEET 3 C 4 ALA B 82 GLU B 87 -1 N ARG B 86 O SER B 96 SHEET 4 C 4 ARG B 149 ASP B 150 1 O ARG B 149 N PHE B 83 SHEET 1 D 2 LEU B 111 ARG B 112 0 SHEET 2 D 2 TYR B 118 PHE B 119 -1 O PHE B 119 N LEU B 111 LINK C16 MAZ L 200 N PTR L 201 1555 1555 1.31 LINK C PTR L 201 N PTM L 202 1555 1555 1.30 LINK C PTM L 202 N ASN L 203 1555 1555 1.32 LINK C16 MAZ H 200 N PTR H 201 1555 1555 1.32 LINK C PTR H 201 N PTM H 202 1555 1555 1.29 LINK C PTM H 202 N ASN H 203 1555 1555 1.33 SITE 1 AC1 22 ARG A 67 ARG A 78 ARG A 86 SER A 88 SITE 2 AC1 22 SER A 90 SER A 96 PHE A 101 ASN A 103 SITE 3 AC1 22 GLN A 106 HIS A 107 PHE A 108 LYS A 109 SITE 4 AC1 22 LEU A 120 SER A 141 ARG A 142 ASN A 143 SITE 5 AC1 22 HOH A 334 HOH A 404 HOH A 443 HOH L 370 SITE 6 AC1 22 HOH L 382 HOH L 452 SITE 1 AC2 23 ARG B 67 ARG B 86 SER B 88 SER B 90 SITE 2 AC2 23 SER B 96 PHE B 101 GLN B 106 HIS B 107 SITE 3 AC2 23 PHE B 108 LYS B 109 LEU B 111 LEU B 120 SITE 4 AC2 23 TRP B 121 SER B 141 ARG B 142 ASN B 143 SITE 5 AC2 23 HOH B 308 HOH H 330 HOH H 335 HOH H 345 SITE 6 AC2 23 HOH H 421 HOH H 436 HOH H 441 CRYST1 60.999 60.999 177.046 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016394 0.009465 0.000000 0.00000 SCALE2 0.000000 0.018930 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005648 0.00000 CONECT 1603 1604 1607 CONECT 1604 1603 1605 CONECT 1605 1604 1606 1608 CONECT 1606 1605 1613 CONECT 1607 1603 1613 CONECT 1608 1605 1609 CONECT 1609 1608 1610 CONECT 1610 1609 1611 1614 CONECT 1611 1610 CONECT 1612 1613 CONECT 1613 1606 1607 1612 CONECT 1614 1610 1615 CONECT 1615 1614 1616 1618 CONECT 1616 1615 1617 1630 CONECT 1617 1616 CONECT 1618 1615 1619 CONECT 1619 1618 1620 1621 CONECT 1620 1619 1622 CONECT 1621 1619 1623 CONECT 1622 1620 1624 CONECT 1623 1621 1624 CONECT 1624 1622 1623 1625 CONECT 1625 1624 1626 CONECT 1626 1625 1627 1628 1629 CONECT 1627 1626 CONECT 1628 1626 CONECT 1629 1626 CONECT 1630 1616 1631 CONECT 1631 1630 1632 1633 1635 CONECT 1632 1631 CONECT 1633 1631 1634 1647 CONECT 1634 1633 CONECT 1635 1631 1636 CONECT 1636 1635 1637 1638 CONECT 1637 1636 1639 CONECT 1638 1636 1640 CONECT 1639 1637 1641 CONECT 1640 1638 1641 CONECT 1641 1639 1640 1642 CONECT 1642 1641 1643 CONECT 1643 1642 1644 1645 1646 CONECT 1644 1643 CONECT 1645 1643 CONECT 1646 1643 CONECT 1647 1633 CONECT 1657 1658 1661 CONECT 1658 1657 1659 CONECT 1659 1658 1660 1662 CONECT 1660 1659 1667 CONECT 1661 1657 1667 CONECT 1662 1659 1663 CONECT 1663 1662 1664 CONECT 1664 1663 1665 1668 CONECT 1665 1664 CONECT 1666 1667 CONECT 1667 1660 1661 1666 CONECT 1668 1664 1669 CONECT 1669 1668 1670 1672 CONECT 1670 1669 1671 1684 CONECT 1671 1670 CONECT 1672 1669 1673 CONECT 1673 1672 1674 1675 CONECT 1674 1673 1676 CONECT 1675 1673 1677 CONECT 1676 1674 1678 CONECT 1677 1675 1678 CONECT 1678 1676 1677 1679 CONECT 1679 1678 1680 CONECT 1680 1679 1681 1682 1683 CONECT 1681 1680 CONECT 1682 1680 CONECT 1683 1680 CONECT 1684 1670 1685 CONECT 1685 1684 1686 1687 1689 CONECT 1686 1685 CONECT 1687 1685 1688 1701 CONECT 1688 1687 CONECT 1689 1685 1690 CONECT 1690 1689 1691 1692 CONECT 1691 1690 1693 CONECT 1692 1690 1694 CONECT 1693 1691 1695 CONECT 1694 1692 1695 CONECT 1695 1693 1694 1696 CONECT 1696 1695 1697 CONECT 1697 1696 1698 1699 1700 CONECT 1698 1697 CONECT 1699 1697 CONECT 1700 1697 CONECT 1701 1687 MASTER 334 0 6 4 12 0 12 6 1838 4 90 18 END