HEADER OXIDOREDUCTASE 15-SEP-01 1JZD TITLE DSBC-DSBDALPHA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBC; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DSBC + N-TERMINAL 4 RESIDUES FROM HIS-TAG; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBD; COMPND 9 CHAIN: C; COMPND 10 FRAGMENT: DSBDALPHA; COMPND 11 SYNONYM: C-TYPE CYTOCHROME BIOGENESIS PROTEIN CYCZ, INNER MEMBRANE COMPND 12 COPPER TOLERANCE PROTEIN; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: DSBC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPROEX HT; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 12 ORGANISM_TAXID: 562; SOURCE 13 GENE: DSBD; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: DH5ALPHA Z; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS THIOL DISULFIDE OXIDOREDUCTASE, REACTION INTERMEDIATE, PROTEIN- KEYWDS 2 PROTEIN COMPLEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.W.HAEBEL,D.GOLDSTONE,F.KATZEN,J.BECKWITH,P.METCALF REVDAT 4 16-AUG-23 1JZD 1 REMARK REVDAT 3 27-OCT-21 1JZD 1 REMARK SEQADV REVDAT 2 24-FEB-09 1JZD 1 VERSN REVDAT 1 08-MAR-03 1JZD 0 JRNL AUTH P.W.HAEBEL,D.GOLDSTONE,F.KATZEN,J.BECKWITH,P.METCALF JRNL TITL THE DISULFIDE BOND ISOMERASE DSBC IS ACTIVATED BY AN JRNL TITL 2 IMMUNOGLOBULIN-FOLD THIOL OXIDOREDUCTASE: CRYSTAL STRUCTURE JRNL TITL 3 OF THE DSBC-DSBDALPHA COMPLEX. JRNL REF EMBO J. V. 21 4774 2002 JRNL REFN ISSN 0261-4189 JRNL PMID 12234918 JRNL DOI 10.1093/EMBOJ/CDF489 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3047250.920 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 24849 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1268 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3825 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 216 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4223 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 124 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.47000 REMARK 3 B22 (A**2) : 1.47000 REMARK 3 B33 (A**2) : -2.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.32 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.900 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.580 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.670 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.280 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.470 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 39.19 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JZD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-01. REMARK 100 THE DEPOSITION ID IS D_1000014365. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-01; 04-JUL-01; 16-MAY-01 REMARK 200 TEMPERATURE (KELVIN) : 100; 100; 100 REMARK 200 PH : 4.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y; N REMARK 200 RADIATION SOURCE : ESRF; EMBL/DESY, HAMBURG; REMARK 200 ROTATING ANODE REMARK 200 BEAMLINE : ID29; BW7B; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL; RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.98; 0.83; 1.5418 REMARK 200 MONOCHROMATOR : NULL; NULL; NULL REMARK 200 OPTICS : NULL; NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; ADSC QUANTUM 4; REMARK 200 MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24849 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1EEJ (DSBC MONOMER) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, PH 4.9, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 115.16800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.45500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.45500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.58400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.45500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.45500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 172.75200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.45500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.45500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.58400 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.45500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.45500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 172.75200 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 115.16800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 216 REMARK 465 GLY B -3 REMARK 465 ALA B -2 REMARK 465 MET B -1 REMARK 465 ALA B 0 REMARK 465 GLY B 215 REMARK 465 LYS B 216 REMARK 465 GLY C 1 REMARK 465 LEU C 2 REMARK 465 PHE C 3 REMARK 465 ASP C 4 REMARK 465 ALA C 5 REMARK 465 PRO C 6 REMARK 465 GLY C 7 REMARK 465 ASN C 126 REMARK 465 ALA C 127 REMARK 465 ALA C 128 REMARK 465 PRO C 129 REMARK 465 GLN C 130 REMARK 465 PRO C 131 REMARK 465 VAL C 132 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG C 8 CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU C 67 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C ALA C 124 ND2 ASN C 125 1.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O TYR A 81 O ASN C 125 5655 1.65 REMARK 500 C TYR A 81 O ASN C 125 5655 1.65 REMARK 500 CB LYS A 82 O ALA C 124 5655 1.82 REMARK 500 NZ LYS A 82 OD1 ASN C 125 5655 2.00 REMARK 500 N LYS A 82 O ASN C 125 5655 2.04 REMARK 500 CG1 VAL A 80 N ASN C 125 5655 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 82 CB LYS A 82 CG 0.179 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 215 N - CA - C ANGL. DEV. = 15.9 DEGREES REMARK 500 VAL C 123 N - CA - C ANGL. DEV. = 26.4 DEGREES REMARK 500 ALA C 124 CB - CA - C ANGL. DEV. = -10.8 DEGREES REMARK 500 ALA C 124 N - CA - C ANGL. DEV. = 33.4 DEGREES REMARK 500 ASN C 125 CB - CA - C ANGL. DEV. = -13.3 DEGREES REMARK 500 ASN C 125 N - CA - C ANGL. DEV. = 24.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A -2 -70.03 -36.43 REMARK 500 MET A -1 -55.06 -11.53 REMARK 500 THR A 57 -70.76 -67.95 REMARK 500 LYS A 82 139.19 -33.00 REMARK 500 GLN A 85 65.29 -107.49 REMARK 500 TRP A 140 5.50 -68.06 REMARK 500 LYS A 156 -156.05 -129.15 REMARK 500 PRO A 160 177.45 -43.88 REMARK 500 ALA A 161 78.00 179.75 REMARK 500 SER A 214 11.01 -155.86 REMARK 500 ILE B 14 37.06 -146.88 REMARK 500 SER B 16 21.92 -77.76 REMARK 500 GLU B 86 105.33 -53.58 REMARK 500 PHE B 123 81.56 -155.00 REMARK 500 PRO B 160 89.23 -58.44 REMARK 500 SER C 9 -132.39 -117.77 REMARK 500 GLN C 26 -122.66 59.64 REMARK 500 ASP C 57 165.55 176.78 REMARK 500 GLU C 69 -18.01 -49.11 REMARK 500 PHE C 70 -69.36 -108.18 REMARK 500 ASP C 79 -57.53 63.30 REMARK 500 ALA C 106 5.86 -64.26 REMARK 500 ALA C 124 -8.17 -143.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EEJ RELATED DB: PDB REMARK 900 RELATED ID: 1JZO RELATED DB: PDB DBREF 1JZD A 1 216 UNP P21892 DSBC_ECOLI 18 236 DBREF 1JZD B 1 216 UNP P21892 DSBC_ECOLI 18 236 DBREF 1JZD C 1 132 UNP P36655 DSBD_ECOLI 20 151 SEQADV 1JZD GLY A -3 UNP P21892 EXPRESSION TAG SEQADV 1JZD ALA A -2 UNP P21892 EXPRESSION TAG SEQADV 1JZD MET A -1 UNP P21892 EXPRESSION TAG SEQADV 1JZD ALA A 0 UNP P21892 EXPRESSION TAG SEQADV 1JZD SER A 101 UNP P21892 CYS 121 ENGINEERED MUTATION SEQADV 1JZD GLY B -3 UNP P21892 EXPRESSION TAG SEQADV 1JZD ALA B -2 UNP P21892 EXPRESSION TAG SEQADV 1JZD MET B -1 UNP P21892 EXPRESSION TAG SEQADV 1JZD ALA B 0 UNP P21892 EXPRESSION TAG SEQADV 1JZD SER B 101 UNP P21892 CYS 121 ENGINEERED MUTATION SEQADV 1JZD ALA C 103 UNP P36655 CYS 122 ENGINEERED MUTATION SEQRES 1 A 220 GLY ALA MET ALA ASP ASP ALA ALA ILE GLN GLN THR LEU SEQRES 2 A 220 ALA LYS MET GLY ILE LYS SER SER ASP ILE GLN PRO ALA SEQRES 3 A 220 PRO VAL ALA GLY MET LYS THR VAL LEU THR ASN SER GLY SEQRES 4 A 220 VAL LEU TYR ILE THR ASP ASP GLY LYS HIS ILE ILE GLN SEQRES 5 A 220 GLY PRO MET TYR ASP VAL SER GLY THR ALA PRO VAL ASN SEQRES 6 A 220 VAL THR ASN LYS MET LEU LEU LYS GLN LEU ASN ALA LEU SEQRES 7 A 220 GLU LYS GLU MET ILE VAL TYR LYS ALA PRO GLN GLU LYS SEQRES 8 A 220 HIS VAL ILE THR VAL PHE THR ASP ILE THR CYS GLY TYR SEQRES 9 A 220 SER HIS LYS LEU HIS GLU GLN MET ALA ASP TYR ASN ALA SEQRES 10 A 220 LEU GLY ILE THR VAL ARG TYR LEU ALA PHE PRO ARG GLN SEQRES 11 A 220 GLY LEU ASP SER ASP ALA GLU LYS GLU MET LYS ALA ILE SEQRES 12 A 220 TRP CYS ALA LYS ASP LYS ASN LYS ALA PHE ASP ASP VAL SEQRES 13 A 220 MET ALA GLY LYS SER VAL ALA PRO ALA SER CYS ASP VAL SEQRES 14 A 220 ASP ILE ALA ASP HIS TYR ALA LEU GLY VAL GLN LEU GLY SEQRES 15 A 220 VAL SER GLY THR PRO ALA VAL VAL LEU SER ASN GLY THR SEQRES 16 A 220 LEU VAL PRO GLY TYR GLN PRO PRO LYS GLU MET LYS GLU SEQRES 17 A 220 PHE LEU ASP GLU HIS GLN LYS MET THR SER GLY LYS SEQRES 1 B 220 GLY ALA MET ALA ASP ASP ALA ALA ILE GLN GLN THR LEU SEQRES 2 B 220 ALA LYS MET GLY ILE LYS SER SER ASP ILE GLN PRO ALA SEQRES 3 B 220 PRO VAL ALA GLY MET LYS THR VAL LEU THR ASN SER GLY SEQRES 4 B 220 VAL LEU TYR ILE THR ASP ASP GLY LYS HIS ILE ILE GLN SEQRES 5 B 220 GLY PRO MET TYR ASP VAL SER GLY THR ALA PRO VAL ASN SEQRES 6 B 220 VAL THR ASN LYS MET LEU LEU LYS GLN LEU ASN ALA LEU SEQRES 7 B 220 GLU LYS GLU MET ILE VAL TYR LYS ALA PRO GLN GLU LYS SEQRES 8 B 220 HIS VAL ILE THR VAL PHE THR ASP ILE THR CYS GLY TYR SEQRES 9 B 220 SER HIS LYS LEU HIS GLU GLN MET ALA ASP TYR ASN ALA SEQRES 10 B 220 LEU GLY ILE THR VAL ARG TYR LEU ALA PHE PRO ARG GLN SEQRES 11 B 220 GLY LEU ASP SER ASP ALA GLU LYS GLU MET LYS ALA ILE SEQRES 12 B 220 TRP CYS ALA LYS ASP LYS ASN LYS ALA PHE ASP ASP VAL SEQRES 13 B 220 MET ALA GLY LYS SER VAL ALA PRO ALA SER CYS ASP VAL SEQRES 14 B 220 ASP ILE ALA ASP HIS TYR ALA LEU GLY VAL GLN LEU GLY SEQRES 15 B 220 VAL SER GLY THR PRO ALA VAL VAL LEU SER ASN GLY THR SEQRES 16 B 220 LEU VAL PRO GLY TYR GLN PRO PRO LYS GLU MET LYS GLU SEQRES 17 B 220 PHE LEU ASP GLU HIS GLN LYS MET THR SER GLY LYS SEQRES 1 C 132 GLY LEU PHE ASP ALA PRO GLY ARG SER GLN PHE VAL PRO SEQRES 2 C 132 ALA ASP GLN ALA PHE ALA PHE ASP PHE GLN GLN ASN GLN SEQRES 3 C 132 HIS ASP LEU ASN LEU THR TRP GLN ILE LYS ASP GLY TYR SEQRES 4 C 132 TYR LEU TYR ARG LYS GLN ILE ARG ILE THR PRO GLU HIS SEQRES 5 C 132 ALA LYS ILE ALA ASP VAL GLN LEU PRO GLN GLY VAL TRP SEQRES 6 C 132 HIS GLU ASP GLU PHE TYR GLY LYS SER GLU ILE TYR ARG SEQRES 7 C 132 ASP ARG LEU THR LEU PRO VAL THR ILE ASN GLN ALA SER SEQRES 8 C 132 ALA GLY ALA THR LEU THR VAL THR TYR GLN GLY ALA ALA SEQRES 9 C 132 ASP ALA GLY PHE CYS TYR PRO PRO GLU THR LYS THR VAL SEQRES 10 C 132 PRO LEU SER GLU VAL VAL ALA ASN ASN ALA ALA PRO GLN SEQRES 11 C 132 PRO VAL FORMUL 4 HOH *124(H2 O) HELIX 1 1 GLY A -3 ASP A 2 1 6 HELIX 2 2 ASP A 2 MET A 12 1 11 HELIX 3 3 VAL A 62 LEU A 74 1 13 HELIX 4 4 GLU A 75 MET A 78 5 4 HELIX 5 5 CYS A 98 GLU A 106 1 9 HELIX 6 6 GLN A 107 LEU A 114 1 8 HELIX 7 7 SER A 130 TRP A 140 1 11 HELIX 8 8 ASP A 144 LYS A 156 1 13 HELIX 9 9 ILE A 167 GLY A 178 1 12 HELIX 10 10 PRO A 198 GLY A 215 1 18 HELIX 11 11 ASP B 2 MET B 12 1 11 HELIX 12 12 VAL B 62 LEU B 67 1 6 HELIX 13 13 LEU B 67 LEU B 74 1 8 HELIX 14 14 GLU B 75 MET B 78 5 4 HELIX 15 15 CYS B 98 GLN B 107 1 10 HELIX 16 16 GLN B 107 LEU B 114 1 8 HELIX 17 17 SER B 130 ALA B 142 1 13 HELIX 18 18 ASP B 144 GLY B 155 1 12 HELIX 19 19 ASP B 166 LEU B 177 1 12 HELIX 20 20 PRO B 198 SER B 214 1 17 HELIX 21 21 PRO C 13 ALA C 17 1 5 HELIX 22 22 LYS C 44 ILE C 46 5 3 SHEET 1 A 6 ASP A 18 PRO A 21 0 SHEET 2 A 6 MET A 27 THR A 32 -1 O THR A 29 N GLN A 20 SHEET 3 A 6 GLY A 35 THR A 40 -1 O LEU A 37 N VAL A 30 SHEET 4 A 6 HIS A 45 GLN A 48 -1 O ILE A 47 N TYR A 38 SHEET 5 A 6 MET B 51 ASP B 53 -1 O TYR B 52 N ILE A 46 SHEET 6 A 6 VAL B 60 ASN B 61 -1 O VAL B 60 N ASP B 53 SHEET 1 B 6 VAL A 60 ASN A 61 0 SHEET 2 B 6 MET A 51 ASP A 53 -1 N ASP A 53 O VAL A 60 SHEET 3 B 6 HIS B 45 GLN B 48 -1 O ILE B 46 N TYR A 52 SHEET 4 B 6 GLY B 35 THR B 40 -1 N TYR B 38 O ILE B 47 SHEET 5 B 6 MET B 27 THR B 32 -1 N VAL B 30 O LEU B 37 SHEET 6 B 6 ASP B 18 PRO B 21 -1 N ASP B 18 O LEU B 31 SHEET 1 C 5 ILE A 79 VAL A 80 0 SHEET 2 C 5 ILE A 116 ALA A 122 -1 O TYR A 120 N ILE A 79 SHEET 3 C 5 HIS A 88 THR A 94 1 N ILE A 90 O THR A 117 SHEET 4 C 5 ALA A 184 VAL A 186 -1 O VAL A 186 N THR A 91 SHEET 5 C 5 LEU A 192 VAL A 193 -1 O VAL A 193 N VAL A 185 SHEET 1 D 5 ILE B 79 TYR B 81 0 SHEET 2 D 5 ILE B 116 ALA B 122 -1 O VAL B 118 N TYR B 81 SHEET 3 D 5 HIS B 88 THR B 94 1 N HIS B 88 O THR B 117 SHEET 4 D 5 ALA B 184 VAL B 186 -1 O VAL B 186 N THR B 91 SHEET 5 D 5 LEU B 192 PRO B 194 -1 O VAL B 193 N VAL B 185 SHEET 1 E 4 ARG C 47 VAL C 58 0 SHEET 2 E 4 ASP C 79 TYR C 100 -1 O ASN C 88 N LYS C 54 SHEET 3 E 4 ASP C 28 ILE C 35 -1 N LEU C 31 O LEU C 83 SHEET 4 E 4 PHE C 18 ASN C 25 -1 N ASN C 25 O ASP C 28 SHEET 1 F 3 ARG C 47 VAL C 58 0 SHEET 2 F 3 ASP C 79 TYR C 100 -1 O ASN C 88 N LYS C 54 SHEET 3 F 3 GLU C 113 PRO C 118 -1 O VAL C 117 N LEU C 96 SHEET 1 G 5 VAL C 64 ASP C 68 0 SHEET 2 G 5 GLY C 72 TYR C 77 -1 O SER C 74 N HIS C 66 SHEET 3 G 5 TYR C 39 TYR C 42 -1 N LEU C 41 O TYR C 77 SHEET 4 G 5 GLY C 102 ALA C 104 -1 O ALA C 103 N TYR C 40 SHEET 5 G 5 PHE C 108 CYS C 109 -1 O PHE C 108 N ALA C 104 SSBOND 1 CYS B 141 CYS B 163 1555 1555 2.23 CISPEP 1 GLY A 49 PRO A 50 0 0.08 CISPEP 2 THR A 182 PRO A 183 0 -0.06 CISPEP 3 GLY B 49 PRO B 50 0 1.18 CISPEP 4 THR B 182 PRO B 183 0 -0.25 CRYST1 68.910 68.910 230.336 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014512 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014512 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004341 0.00000