HEADER LIPID BINDING PROTEIN 17-SEP-01 1JZU TITLE CELL TRANSFORMATION BY THE MYC ONCOGENE ACTIVATES EXPRESSION OF A TITLE 2 LIPOCALIN: ANALYSIS OF THE GENE (Q83) AND SOLUTION STRUCTURE OF ITS TITLE 3 PROTEIN PRODUCT COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOCALIN Q83; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COTURNIX COTURNIX; SOURCE 3 ORGANISM_COMMON: COMMON QUAIL; SOURCE 4 ORGANISM_TAXID: 9091; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3D-Q83 KEYWDS BETA BARREL, LIPOCALIN, LIPID BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.HARTL,T.MATT,W.SCHUELER,G.SIEMEISTER,G.KONTAXIS,K.KLOIBER,R.KONRAT, AUTHOR 2 K.BISTER REVDAT 4 27-OCT-21 1JZU 1 REMARK SEQADV REVDAT 3 24-FEB-09 1JZU 1 VERSN REVDAT 2 07-OCT-03 1JZU 1 AUTHOR JRNL REVDAT 1 15-JUL-03 1JZU 0 JRNL AUTH M.HARTL,T.MATT,W.SCHUELER,G.SIEMEISTER,G.KONTAXIS,K.KLOIBER, JRNL AUTH 2 R.KONRAT,K.BISTER JRNL TITL CELL TRANSFORMATION BY THE V-MYC ONCOGENE ABROGATES JRNL TITL 2 C-MYC/MAX-MEDIATED SUPPRESSION OF A C/EBPBETA-DEPENDENT JRNL TITL 3 LIPOCALIN GENE. JRNL REF J.MOL.BIOL. V. 333 33 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 14516741 JRNL DOI 10.1016/J.JMB.2003.08.018 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.KONTAXIS,T.MATT,W.SCHUELER,B.KRAEUTLER,K.BISTER,R.KONRAT REMARK 1 TITL SEQUENCE-SPECIFIC RESONANCE ASSIGNMENTS OF Q83, A LIPOCALIN REMARK 1 TITL 2 HIGHLY EXPRESSED IN V-MYC-TRANSFORMED AVIAN FIBROBLASTS REMARK 1 REF J.BIOMOL.NMR V. 17 177 2000 REMARK 1 REFN ISSN 0925-2738 REMARK 1 DOI 10.1023/A:1008386018430 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1 REV B, CNS 1.0 REMARK 3 AUTHORS : VARIAN ASSOCIATES, INC. (VNMR), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JZU COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-SEP-01. REMARK 100 THE DEPOSITION ID IS D_1000014382. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 299 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : 20MM POTASSIUM PHOSPHATE; 50MM REMARK 210 POTASSIUM CHLORIDE; 0.5MM REMARK 210 DITHIOTHREITOL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 3MM LIPOCALIN Q83 U-15N,13C; 20 REMARK 210 MM POTASSIUM PHOSPHATE; 50 MM REMARK 210 POTASSIUM CHLORIDE; 0.5MM REMARK 210 DITHIOTHREITOL; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HCCH-TOCSY; 3D_CCH-TOCSY-NNH; REMARK 210 3D_NOESY-HSQC:(TWO_13C,CA/METHYL-CENTERED,15N); 3D HNHA; CROSS- REMARK 210 CORRELATED_RELAXATION_RATES_CA(I)HA(I)-DD/C'(I)-CSA; CROSS- REMARK 210 CORRELATED_RELAXATION_RATES_CA(I)HA(I)-DD/C'(I-1)-CSA REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1.8 REV 2001.030.21.27, REMARK 210 ANSIG 3.3, NMRVIEW 4.1.3, ARIA/ REMARK 210 CNS 1.0 REMARK 210 METHOD USED : ARIA/CNS AUTOMATED REFINEMENT REMARK 210 USING ALSO AMBIGUOUS NOE REMARK 210 DISTANCE CONSTRAINTS; SIMULATED REMARK 210 ANNEALING (TORSION ANGLE REMARK 210 DYNAMICS) REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 15 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 19 H MET A 112 1.52 REMARK 500 O ALA A 127 H LYS A 131 1.53 REMARK 500 O ILE A 128 H LEU A 132 1.58 REMARK 500 O ILE A 98 H ARG A 113 1.58 REMARK 500 O LYS A 84 H THR A 101 1.59 REMARK 500 O LEU A 18 O ALA A 144 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 2 -45.10 -178.31 REMARK 500 1 ASP A 5 125.21 -173.62 REMARK 500 1 VAL A 16 -41.63 -135.57 REMARK 500 1 GLU A 44 36.51 -160.35 REMARK 500 1 LYS A 55 54.15 178.70 REMARK 500 1 CYS A 59 -70.81 -151.13 REMARK 500 1 ARG A 60 -134.89 175.28 REMARK 500 1 LYS A 68 -114.14 178.76 REMARK 500 1 GLU A 74 -137.33 -121.17 REMARK 500 1 GLU A 79 54.88 -160.79 REMARK 500 1 GLU A 80 151.09 61.76 REMARK 500 1 LEU A 88 -155.15 -118.29 REMARK 500 1 ASP A 89 -111.76 70.81 REMARK 500 1 THR A 90 69.48 -151.10 REMARK 500 1 ASP A 91 39.62 -77.66 REMARK 500 1 SER A 94 -26.01 -171.57 REMARK 500 1 GLU A 120 71.94 -69.62 REMARK 500 1 ASN A 137 -50.45 -171.50 REMARK 500 1 TYR A 138 -177.41 176.61 REMARK 500 1 THR A 139 -68.17 -103.82 REMARK 500 1 ALA A 144 141.16 -173.76 REMARK 500 1 LEU A 146 127.71 -33.85 REMARK 500 1 ARG A 148 60.47 -163.71 REMARK 500 1 GLN A 149 -142.21 -138.31 REMARK 500 1 GLU A 150 -123.31 -45.35 REMARK 500 1 GLU A 151 -120.21 -75.45 REMARK 500 1 GLU A 156 133.64 -176.22 REMARK 500 2 ASP A 5 131.40 -173.36 REMARK 500 2 ILE A 9 59.34 -141.45 REMARK 500 2 VAL A 16 -50.27 -127.41 REMARK 500 2 ALA A 19 126.03 -174.52 REMARK 500 2 THR A 22 -39.49 -166.72 REMARK 500 2 LYS A 31 -157.19 -59.92 REMARK 500 2 MET A 32 105.26 54.05 REMARK 500 2 LYS A 33 134.84 -170.33 REMARK 500 2 GLU A 44 44.59 -158.32 REMARK 500 2 ASN A 57 86.12 -49.44 REMARK 500 2 ASP A 72 156.84 89.68 REMARK 500 2 GLU A 74 -133.83 -87.74 REMARK 500 2 GLU A 80 -173.36 57.22 REMARK 500 2 ALA A 81 -73.87 -57.78 REMARK 500 2 ASP A 89 -133.55 62.00 REMARK 500 2 THR A 90 97.99 -161.09 REMARK 500 2 SER A 94 -56.34 -178.81 REMARK 500 2 ASP A 105 -136.17 61.99 REMARK 500 2 GLU A 120 62.20 -68.32 REMARK 500 2 ARG A 136 32.60 -89.09 REMARK 500 2 ASN A 137 120.34 58.94 REMARK 500 2 ALA A 144 131.73 -170.75 REMARK 500 2 GLU A 151 -85.37 -94.64 REMARK 500 REMARK 500 THIS ENTRY HAS 603 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4664 RELATED DB: BMRB REMARK 900 PRELIMINARY SEQUENCE-SPECIFIC RESONANCE ASSIGNMENTS OF Q83 DBREF 1JZU A 1 157 UNP Q9I9P7 EXFAB_COTJA 22 178 SEQADV 1JZU MET A 1 UNP Q9I9P7 ALA 22 ENGINEERED MUTATION SEQRES 1 A 157 MET THR VAL PRO ASP ARG SER GLU ILE ALA GLY LYS TRP SEQRES 2 A 157 TYR VAL VAL ALA LEU ALA SER ASN THR GLU PHE PHE LEU SEQRES 3 A 157 ARG GLU LYS ASP LYS MET LYS MET ALA MET ALA ARG ILE SEQRES 4 A 157 SER PHE LEU GLY GLU ASP GLU LEU LYS VAL SER TYR ALA SEQRES 5 A 157 VAL PRO LYS PRO ASN GLY CYS ARG LYS TRP GLU THR THR SEQRES 6 A 157 PHE LYS LYS THR SER ASP ASP GLY GLU VAL TYR TYR SER SEQRES 7 A 157 GLU GLU ALA LYS LYS LYS VAL GLU VAL LEU ASP THR ASP SEQRES 8 A 157 TYR LYS SER TYR ALA VAL ILE TYR ALA THR ARG VAL LYS SEQRES 9 A 157 ASP GLY ARG THR LEU HIS MET MET ARG LEU TYR SER ARG SEQRES 10 A 157 SER PRO GLU VAL SER PRO ALA ALA THR ALA ILE PHE ARG SEQRES 11 A 157 LYS LEU ALA GLY GLU ARG ASN TYR THR ASP GLU MET VAL SEQRES 12 A 157 ALA MET LEU PRO ARG GLN GLU GLU CYS THR VAL ASP GLU SEQRES 13 A 157 VAL HELIX 1 1 ASP A 5 ILE A 9 5 5 HELIX 2 2 THR A 22 LEU A 26 5 5 HELIX 3 3 ARG A 27 MET A 32 1 6 HELIX 4 4 SER A 122 ASN A 137 1 16 HELIX 5 5 THR A 139 VAL A 143 5 5 SHEET 1 A10 GLY A 11 ASN A 21 0 SHEET 2 A10 ALA A 35 LEU A 42 -1 N ALA A 35 O VAL A 15 SHEET 3 A10 GLU A 46 LYS A 55 -1 N GLU A 46 O LEU A 42 SHEET 4 A10 ARG A 60 SER A 70 -1 O ARG A 60 N LYS A 55 SHEET 5 A10 VAL A 75 GLU A 79 -1 O SER A 78 N THR A 69 SHEET 6 A10 LYS A 83 ASP A 89 -1 N LYS A 83 O GLU A 79 SHEET 7 A10 TYR A 95 LYS A 104 -1 O VAL A 97 N LEU A 88 SHEET 8 A10 ARG A 107 SER A 116 -1 O ARG A 107 N LYS A 104 SHEET 9 A10 GLY A 11 ASN A 21 -1 O TYR A 14 N SER A 116 SHEET 10 A10 ALA A 144 MET A 145 -1 O ALA A 144 N LEU A 18 SSBOND 1 CYS A 59 CYS A 152 1555 1555 2.03 CRYST1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1