HEADER TRANSFERASE 24-SEP-01 1K18 TITLE MINIMIZED AVERAGE NMR STRUCTURE OF THE ZINC FINGER DOMAIN OF HUMAN DNA TITLE 2 POLYMERASE-ALPHA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE ALPHA CATALYTIC SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZINC FINGER DOMAIN (RESIDUES 1347-1377); COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE SEQUENCE OCCURS NATURALLY IN HUMANS. KEYWDS ZINC FINGER PROTEIN, DNA BINDING DOMAIN, POLYMERASE-ALPHA, KEYWDS 2 TRANSFERASE EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR F.EVANICS,L.MAURMANN,W.W.YANG,R.N.BOSE REVDAT 4 23-FEB-22 1K18 1 REMARK REVDAT 3 24-FEB-09 1K18 1 VERSN REVDAT 2 13-APR-04 1K18 1 JRNL REVDAT 1 24-JUN-03 1K18 0 JRNL AUTH F.EVANICS,L.MAURMANN,W.W.YANG,R.N.BOSE JRNL TITL NUCLEAR MAGNETIC RESONANCE STRUCTURES OF THE ZINC FINGER JRNL TITL 2 DOMAIN OF HUMAN DNA POLYMERASE-ALPHA. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1651 163 2003 JRNL REFN ISSN 0006-3002 JRNL PMID 14499601 JRNL DOI 10.1016/S1570-9639(03)00266-8 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.VOLCKOVA,F.EVANICS,W.W.YANG,R.N.BOSE REMARK 1 TITL UNWINDING OF DNA POLYMERASES BY THE ANTITUMOR DRUG, REMARK 1 TITL 2 CIS-DIAMMINEDICHLOROPLATINUM(II) REMARK 1 REF J.CHEM.SOC.,CHEM.COMMUN. V. 10 1128 2003 REMARK 1 REFN ISSN 1359-7345 REMARK 1 DOI 10.1039/B301356A REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.0, DISCOVER 97.0 REMARK 3 AUTHORS : BRUKER (XWINNMR), MSI (DISCOVER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 190 NOE DERIVED DISTANCE RESTRAINTS AND REMARK 3 4 DIHEDRAL ANGLE RESTRAINTS WERE USED FOR THE CALCULATIONS. REMARK 4 REMARK 4 1K18 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-01. REMARK 100 THE DEPOSITION ID IS D_1000014432. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 3MM ZINC FINGER PEPTIDE; 3.6 MM REMARK 210 ZN(II)NITRATE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; DQF-COSY; TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; UNITY REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CORMA 5.2, MARDIGRAS 3.2, DGII REMARK 210 97.0 REMARK 210 METHOD USED : SIMULATED ANNEALING FOLLOWED BY REMARK 210 RESTRAINED MOLECULAR MECHANICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR EXPERIMENTS. THE NOESY MIXING TIME WAS 200 MS. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 3 CD GLU A 3 OE2 0.108 REMARK 500 GLU A 4 CD GLU A 4 OE2 0.108 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 4 N - CA - C ANGL. DEV. = 16.8 DEGREES REMARK 500 ARG A 8 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 12 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 12 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 HIS A 13 ND1 - CE1 - NE2 ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG A 20 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 20 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 4 3.53 -66.40 REMARK 500 PRO A 15 20.86 -66.39 REMARK 500 PRO A 23 69.97 -113.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 4 PRO A 5 138.79 REMARK 500 THR A 11 ARG A 12 149.47 REMARK 500 LEU A 14 PRO A 15 142.24 REMARK 500 PRO A 15 LEU A 16 129.27 REMARK 500 GLN A 17 PHE A 18 118.37 REMARK 500 SER A 19 ARG A 20 134.59 REMARK 500 LEU A 24 CYS A 25 -56.98 REMARK 500 PRO A 26 ALA A 27 62.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 18 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1K0P RELATED DB: PDB REMARK 900 NMR STRUCTURES OF THE ZINC FINGER DOMAIN OF HUMAN DNA POLYMERASE- REMARK 900 ALPHA DBREF 1K18 A 1 31 UNP P09884 DPOA_HUMAN 1347 1377 SEQRES 1 A 31 ILE CYS GLU GLU PRO THR CYS ARG ASN ARG THR ARG HIS SEQRES 2 A 31 LEU PRO LEU GLN PHE SER ARG THR GLY PRO LEU CYS PRO SEQRES 3 A 31 ALA CYS MET LYS ALA HELIX 1 1 GLU A 4 HIS A 13 1 10 CISPEP 1 GLY A 22 PRO A 23 0 0.53 CISPEP 2 CYS A 25 PRO A 26 0 16.95 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000